Wall clock time and date at job start Tue Mar 31 2020 19:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.47139 * 2 1 4 4 C 1.52994 * 109.47179 * 119.99969 * 2 1 3 5 5 C 1.53002 * 117.50197 * 8.74443 * 4 2 1 6 6 C 1.53001 * 117.49767 * 300.08726 * 4 2 1 7 7 N 1.46500 * 109.47148 * 240.00270 * 2 1 3 8 8 C 1.34771 * 120.00439 * 120.00153 * 7 2 1 9 9 O 1.21348 * 120.00622 * 188.33923 * 8 7 2 10 10 C 1.49458 * 119.99829 * 8.33842 * 8 7 2 11 11 O 1.21353 * 119.99905 * 272.83051 * 10 8 7 12 12 N 1.34772 * 120.00134 * 92.55763 * 10 8 7 13 13 C 1.46927 * 120.63016 * 354.73168 * 12 10 8 14 14 C 1.53626 * 108.54310 * 126.37161 * 13 12 10 15 15 C 1.53033 * 109.24055 * 54.85512 * 14 13 12 16 16 C 1.53033 * 109.54194 * 298.51188 * 15 14 13 17 17 H 1.09003 * 109.49736 * 301.41791 * 16 15 14 18 18 C 1.50703 * 109.50199 * 181.31665 * 16 15 14 19 19 H 1.07999 * 119.99429 * 0.16585 * 18 16 15 20 20 C 1.37871 * 120.00001 * 180.15876 * 18 16 15 21 21 N 1.31516 * 120.00299 * 0.02562 * 20 18 16 22 22 Si 1.86805 * 119.99714 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47045 * 90.00459 * 22 20 18 24 24 H 1.48504 * 109.47207 * 210.00331 * 22 20 18 25 25 H 1.48501 * 109.47438 * 330.00284 * 22 20 18 26 26 C 1.46927 * 120.63241 * 175.01741 * 12 10 8 27 27 C 1.46503 * 119.99634 * 299.99392 * 7 2 1 28 28 C 1.52998 * 117.49640 * 195.61704 * 27 7 2 29 29 C 1.52999 * 117.49590 * 126.95806 * 27 7 2 30 30 H 1.09001 * 109.47267 * 299.99715 * 1 2 3 31 31 H 1.09004 * 109.47122 * 60.00303 * 1 2 3 32 32 H 1.08996 * 109.47004 * 180.02562 * 1 2 3 33 33 H 1.09000 * 115.55149 * 154.42021 * 4 2 1 34 34 H 1.09003 * 117.49411 * 0.02562 * 5 4 2 35 35 H 1.08995 * 117.50253 * 145.01818 * 5 4 2 36 36 H 1.09002 * 117.49705 * 214.97683 * 6 4 2 37 37 H 1.09004 * 117.50331 * 359.97438 * 6 4 2 38 38 H 1.09005 * 109.58973 * 246.20651 * 13 12 10 39 39 H 1.09001 * 109.58491 * 6.62955 * 13 12 10 40 40 H 1.08999 * 109.63119 * 294.86667 * 14 13 12 41 41 H 1.08994 * 109.45669 * 174.74494 * 14 13 12 42 42 H 1.09007 * 109.45890 * 178.48994 * 15 14 13 43 43 H 1.08999 * 109.46028 * 58.53650 * 15 14 13 44 44 H 0.97002 * 120.00135 * 179.97438 * 21 20 18 45 45 H 1.09006 * 109.58311 * 353.36957 * 26 12 10 46 46 H 1.08997 * 109.58617 * 113.64947 * 26 12 10 47 47 H 1.09000 * 115.54998 * 341.29154 * 27 7 2 48 48 H 1.08994 * 117.50299 * 0.02562 * 28 27 7 49 49 H 1.09002 * 117.49672 * 145.02420 * 28 27 7 50 50 H 1.08999 * 117.50316 * 214.98363 * 29 27 7 51 51 H 1.09006 * 117.49966 * 0.02562 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.0109 -1.4565 2.1101 6 6 1.6340 -0.1506 2.6095 7 7 2.0184 -0.6906 -1.1962 8 6 2.7932 -0.0356 -2.0833 9 8 3.0727 -0.5544 -3.1441 10 6 3.3083 1.3298 -1.7606 11 8 2.6373 2.3077 -2.0173 12 7 4.5157 1.4746 -1.1796 13 6 5.2868 0.2991 -0.7525 14 6 6.6867 0.3788 -1.3801 15 6 7.3286 1.7185 -1.0126 16 6 6.4829 2.8629 -1.5757 17 1 6.4052 2.7594 -2.6580 18 6 7.1329 4.1807 -1.2410 19 1 8.0584 4.2003 -0.6848 20 6 6.5462 5.3611 -1.6451 21 7 5.4189 5.3371 -2.3222 22 14 7.3523 6.9945 -1.2308 23 1 8.2871 7.3754 -2.3200 24 1 6.3074 8.0399 -1.0871 25 1 8.1033 6.8667 0.0439 26 6 5.0831 2.8112 -0.9554 27 6 1.6645 -2.0932 -1.4280 28 6 2.4775 -2.8639 -2.4700 29 6 1.0362 -2.4496 -2.7767 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.0330 -1.1627 1.1647 34 1 -0.0295 -1.4267 1.7863 35 1 1.3269 -2.3816 2.5922 36 1 2.3598 -0.2172 3.4201 37 1 1.0039 0.7388 2.6146 38 1 5.3703 0.2919 0.3343 39 1 4.7853 -0.6086 -1.0884 40 1 6.6071 0.2987 -2.4642 41 1 7.3022 -0.4362 -0.9994 42 1 8.3328 1.7677 -1.4338 43 1 7.3853 1.8085 0.0722 44 1 5.0059 6.1676 -2.6061 45 1 4.4472 3.5616 -1.4252 46 1 5.1480 3.0057 0.1151 47 1 1.3201 -2.6422 -0.5515 48 1 3.2759 -2.3276 -2.9827 49 1 2.6677 -3.9201 -2.2792 50 1 0.2787 -3.2333 -2.7877 51 1 0.8865 -1.6406 -3.4917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328164998.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:05 Heat of formation + Delta-G solvation = -2.540074 kcal Electronic energy + Delta-G solvation = -31248.493742 eV Core-core repulsion = 27343.188867 eV Total energy + Delta-G solvation = -3905.304874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.02627 -39.03192 -38.23982 -36.85609 -36.15144 -34.11183 -33.40232 -31.84838 -30.03261 -29.77193 -26.19761 -25.10598 -24.93843 -23.77969 -22.54864 -22.40269 -21.92485 -21.52456 -20.28474 -19.28417 -18.10815 -17.49634 -16.63100 -16.40257 -16.13892 -15.85191 -15.50992 -15.00532 -14.60595 -14.33551 -14.15587 -13.81077 -13.75760 -13.62481 -13.41957 -13.03842 -12.83225 -12.66697 -12.31657 -12.22188 -12.05227 -11.97648 -11.84770 -11.47921 -11.43237 -11.05249 -10.98484 -10.97266 -10.72035 -10.60551 -10.52485 -10.43778 -10.36017 -10.27638 -10.17915 -9.97355 -9.21952 -9.18409 -8.85350 -8.51133 -8.46801 -7.93390 -6.03120 -4.12152 2.28671 2.42525 2.95438 3.29617 3.37000 3.38883 3.49584 3.66433 3.87781 4.37598 4.41475 4.42929 4.62933 4.72577 4.82002 4.89467 4.93441 5.00598 5.08197 5.20717 5.24503 5.27732 5.41032 5.42384 5.46506 5.60345 5.61482 5.63433 5.68165 5.72286 5.88963 5.90700 5.92615 5.99340 6.06266 6.13092 6.26191 6.27640 6.52235 6.59882 6.62235 6.78156 6.91601 7.00803 7.09932 7.14621 7.55127 7.80346 7.89693 7.95041 8.04975 8.30638 8.49336 8.92014 9.53898 11.02436 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.003705 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.607669 B = 7556.049980 C = 7993.574511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.164 3.836 3 H 0.101 0.899 4 C -0.166 4.166 5 C -0.183 4.183 6 C -0.169 4.169 7 N -0.568 5.568 8 C 0.519 3.481 9 O -0.507 6.507 10 C 0.505 3.495 11 O -0.514 6.514 12 N -0.583 5.583 13 C 0.109 3.891 14 C -0.134 4.134 15 C -0.110 4.110 16 C 0.039 3.961 17 H 0.031 0.969 18 C -0.521 4.521 19 H 0.060 0.940 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.111 3.889 27 C 0.074 3.926 28 C -0.192 4.192 29 C -0.187 4.187 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.264 0.736 45 H 0.124 0.876 46 H 0.049 0.951 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.091 0.909 50 H 0.095 0.905 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.866 -17.004 8.818 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.061 3.939 3 H 0.119 0.881 4 C -0.185 4.185 5 C -0.220 4.220 6 C -0.206 4.206 7 N -0.301 5.301 8 C 0.303 3.697 9 O -0.381 6.381 10 C 0.286 3.714 11 O -0.389 6.389 12 N -0.317 5.317 13 C -0.014 4.014 14 C -0.172 4.172 15 C -0.148 4.148 16 C 0.020 3.980 17 H 0.049 0.951 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.519 5.519 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.008 4.008 27 C -0.030 4.030 28 C -0.229 4.229 29 C -0.225 4.225 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.142 0.858 46 H 0.068 0.932 47 H 0.149 0.851 48 H 0.150 0.850 49 H 0.109 0.891 50 H 0.113 0.887 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.200 -16.582 8.020 20.589 hybrid contribution 0.408 0.819 0.195 0.936 sum -8.791 -15.763 8.215 19.830 Atomic orbital electron populations 1.22227 0.94119 1.02634 1.02940 1.20745 0.94801 0.96238 0.82122 0.88135 1.22663 1.00047 1.04398 0.91355 1.23184 0.98871 0.96177 1.03746 1.22966 1.03664 0.97531 0.96445 1.47471 1.49833 1.10476 1.22307 1.20865 0.78424 0.86242 0.84188 1.90627 1.58753 1.65614 1.23139 1.20015 0.83152 0.88803 0.79410 1.90826 1.57062 1.38521 1.52498 1.48584 1.16590 1.09963 1.56547 1.21785 0.93160 0.87361 0.99114 1.22018 0.94839 0.99234 1.01083 1.21628 0.99263 0.93735 1.00146 1.18992 0.90030 0.92691 0.96318 0.95109 1.21060 1.08368 0.90073 1.36411 0.92224 1.25057 0.94917 0.99334 0.94686 1.69874 1.17432 1.27576 1.36981 0.86576 0.79072 0.83491 0.78770 1.20651 1.21164 1.19873 1.22470 0.98693 0.80013 0.99630 1.21624 1.05354 0.81976 0.94064 1.23767 0.97147 0.99699 1.02284 1.23269 0.96338 1.03616 0.99311 0.91086 0.91651 0.91544 0.87201 0.88008 0.88926 0.88479 0.88446 0.91294 0.91644 0.91792 0.92021 0.92770 0.93054 0.92553 0.85799 0.93216 0.85097 0.84961 0.89076 0.88709 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 7.79 37.16 0.29 -1.30 16 2 C 0.16 1.95 2.95 -67.93 -0.20 1.75 16 3 H 0.10 1.48 6.12 -51.92 -0.32 1.17 16 4 C -0.17 -1.57 5.24 -90.62 -0.47 -2.04 16 5 C -0.18 -1.33 9.57 -26.69 -0.26 -1.59 16 6 C -0.17 -1.41 9.90 -26.70 -0.26 -1.67 16 7 N -0.57 -7.63 2.73 -159.08 -0.43 -8.06 16 8 C 0.52 9.18 5.24 -11.58 -0.06 9.12 16 9 O -0.51 -9.87 12.86 5.50 0.07 -9.80 16 10 C 0.51 10.51 5.52 -11.58 -0.06 10.45 16 11 O -0.51 -12.59 16.36 5.49 0.09 -12.50 16 12 N -0.58 -11.67 2.97 -173.00 -0.51 -12.18 16 13 C 0.11 1.75 6.38 -3.48 -0.02 1.73 16 14 C -0.13 -2.21 6.10 -26.39 -0.16 -2.37 16 15 C -0.11 -2.15 5.10 -26.70 -0.14 -2.29 16 16 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 17 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 18 C -0.52 -13.85 8.56 -34.44 -0.29 -14.15 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 21 N -0.88 -25.45 11.39 55.43 0.63 -24.82 16 22 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 C 0.11 2.62 5.38 -3.71 -0.02 2.60 16 27 C 0.07 0.82 5.47 -67.93 -0.37 0.44 16 28 C -0.19 -2.25 9.62 -26.69 -0.26 -2.51 16 29 C -0.19 -2.14 9.88 -26.69 -0.26 -2.40 16 30 H 0.07 0.60 7.07 -51.93 -0.37 0.23 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.55 6.50 -51.93 -0.34 0.21 16 33 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 0.68 5.85 -51.93 -0.30 0.37 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.81 7.60 -51.93 -0.39 0.42 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 0.97 6.31 -51.93 -0.33 0.64 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.12 3.43 5.15 -51.93 -0.27 3.16 16 46 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.13 1.12 7.77 -51.93 -0.40 0.72 16 48 H 0.13 1.98 5.25 -52.02 -0.27 1.70 16 49 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.10 1.38 7.58 -51.93 -0.39 0.99 16 LS Contribution 394.55 15.07 5.95 5.95 Total: -1.00 -31.06 394.55 -10.51 -41.57 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -8.42 Total: 5.74 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.86 Total: -1.86 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -0.32 Total: -45.06 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.16 Total: -22.29 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.06 -10.51 -41.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328164998.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.029 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds