Wall clock time and date at job start Tue Mar 31 2020 19:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.47139 * 2 1 4 4 C 1.52994 * 109.47179 * 119.99969 * 2 1 3 5 5 C 1.53002 * 117.50197 * 8.74443 * 4 2 1 6 6 C 1.53001 * 117.49767 * 300.08726 * 4 2 1 7 7 N 1.46500 * 109.47148 * 240.00270 * 2 1 3 8 8 C 1.34771 * 120.00439 * 120.00153 * 7 2 1 9 9 O 1.21348 * 120.00622 * 188.33923 * 8 7 2 10 10 C 1.49458 * 119.99829 * 8.33842 * 8 7 2 11 11 O 1.21353 * 119.99905 * 272.83051 * 10 8 7 12 12 N 1.34772 * 120.00134 * 92.55763 * 10 8 7 13 13 C 1.46927 * 120.63016 * 354.73168 * 12 10 8 14 14 C 1.53626 * 108.54310 * 126.37161 * 13 12 10 15 15 C 1.53033 * 109.24055 * 54.85512 * 14 13 12 16 16 C 1.53033 * 109.54194 * 298.51188 * 15 14 13 17 17 H 1.09003 * 109.49736 * 301.41791 * 16 15 14 18 18 C 1.50703 * 109.50199 * 181.31665 * 16 15 14 19 19 H 1.07999 * 119.99429 * 0.16585 * 18 16 15 20 20 C 1.37871 * 120.00001 * 180.15876 * 18 16 15 21 21 N 1.31516 * 120.00299 * 0.02562 * 20 18 16 22 22 Si 1.86805 * 119.99714 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47045 * 90.00459 * 22 20 18 24 24 H 1.48504 * 109.47207 * 210.00331 * 22 20 18 25 25 H 1.48501 * 109.47438 * 330.00284 * 22 20 18 26 26 C 1.46927 * 120.63241 * 175.01741 * 12 10 8 27 27 C 1.46503 * 119.99634 * 299.99392 * 7 2 1 28 28 C 1.52998 * 117.49640 * 195.61704 * 27 7 2 29 29 C 1.52999 * 117.49590 * 126.95806 * 27 7 2 30 30 H 1.09001 * 109.47267 * 299.99715 * 1 2 3 31 31 H 1.09004 * 109.47122 * 60.00303 * 1 2 3 32 32 H 1.08996 * 109.47004 * 180.02562 * 1 2 3 33 33 H 1.09000 * 115.55149 * 154.42021 * 4 2 1 34 34 H 1.09003 * 117.49411 * 0.02562 * 5 4 2 35 35 H 1.08995 * 117.50253 * 145.01818 * 5 4 2 36 36 H 1.09002 * 117.49705 * 214.97683 * 6 4 2 37 37 H 1.09004 * 117.50331 * 359.97438 * 6 4 2 38 38 H 1.09005 * 109.58973 * 246.20651 * 13 12 10 39 39 H 1.09001 * 109.58491 * 6.62955 * 13 12 10 40 40 H 1.08999 * 109.63119 * 294.86667 * 14 13 12 41 41 H 1.08994 * 109.45669 * 174.74494 * 14 13 12 42 42 H 1.09007 * 109.45890 * 178.48994 * 15 14 13 43 43 H 1.08999 * 109.46028 * 58.53650 * 15 14 13 44 44 H 0.97002 * 120.00135 * 179.97438 * 21 20 18 45 45 H 1.09006 * 109.58311 * 353.36957 * 26 12 10 46 46 H 1.08997 * 109.58617 * 113.64947 * 26 12 10 47 47 H 1.09000 * 115.54998 * 341.29154 * 27 7 2 48 48 H 1.08994 * 117.50299 * 0.02562 * 28 27 7 49 49 H 1.09002 * 117.49672 * 145.02420 * 28 27 7 50 50 H 1.08999 * 117.50316 * 214.98363 * 29 27 7 51 51 H 1.09006 * 117.49966 * 0.02562 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.0109 -1.4565 2.1101 6 6 1.6340 -0.1506 2.6095 7 7 2.0184 -0.6906 -1.1962 8 6 2.7932 -0.0356 -2.0833 9 8 3.0727 -0.5544 -3.1441 10 6 3.3083 1.3298 -1.7606 11 8 2.6373 2.3077 -2.0173 12 7 4.5157 1.4746 -1.1796 13 6 5.2868 0.2991 -0.7525 14 6 6.6867 0.3788 -1.3801 15 6 7.3286 1.7185 -1.0126 16 6 6.4829 2.8629 -1.5757 17 1 6.4052 2.7594 -2.6580 18 6 7.1329 4.1807 -1.2410 19 1 8.0584 4.2003 -0.6848 20 6 6.5462 5.3611 -1.6451 21 7 5.4189 5.3371 -2.3222 22 14 7.3523 6.9945 -1.2308 23 1 8.2871 7.3754 -2.3200 24 1 6.3074 8.0399 -1.0871 25 1 8.1033 6.8667 0.0439 26 6 5.0831 2.8112 -0.9554 27 6 1.6645 -2.0932 -1.4280 28 6 2.4775 -2.8639 -2.4700 29 6 1.0362 -2.4496 -2.7767 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.0330 -1.1627 1.1647 34 1 -0.0295 -1.4267 1.7863 35 1 1.3269 -2.3816 2.5922 36 1 2.3598 -0.2172 3.4201 37 1 1.0039 0.7388 2.6146 38 1 5.3703 0.2919 0.3343 39 1 4.7853 -0.6086 -1.0884 40 1 6.6071 0.2987 -2.4642 41 1 7.3022 -0.4362 -0.9994 42 1 8.3328 1.7677 -1.4338 43 1 7.3853 1.8085 0.0722 44 1 5.0059 6.1676 -2.6061 45 1 4.4472 3.5616 -1.4252 46 1 5.1480 3.0057 0.1151 47 1 1.3201 -2.6422 -0.5515 48 1 3.2759 -2.3276 -2.9827 49 1 2.6677 -3.9201 -2.2792 50 1 0.2787 -3.2333 -2.7877 51 1 0.8865 -1.6406 -3.4917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328164998.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:04 Heat of formation + Delta-G solvation = -20.298588 kcal Electronic energy + Delta-G solvation = -31249.263809 eV Core-core repulsion = 27343.188867 eV Total energy + Delta-G solvation = -3906.074941 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.36576 -40.47815 -39.19715 -38.52817 -37.26686 -35.39819 -35.03682 -33.56706 -31.69087 -30.86166 -27.85567 -26.91060 -25.79708 -25.16530 -23.60134 -23.32782 -23.21771 -22.71372 -21.39163 -20.78431 -19.56494 -18.74292 -18.22852 -17.83246 -17.67111 -17.07807 -16.62797 -16.49726 -15.94635 -15.79075 -15.34804 -15.26291 -15.19453 -14.82371 -14.56944 -14.54440 -14.41091 -13.97885 -13.86930 -13.63890 -13.15376 -12.90336 -12.87716 -12.77676 -12.74538 -12.63306 -12.32903 -12.26535 -12.10175 -12.00781 -11.86442 -11.82240 -11.72062 -11.38297 -11.21702 -11.11559 -10.99186 -10.89829 -10.56595 -10.40232 -9.65432 -9.61878 -8.13013 -6.30500 0.88305 1.05775 1.37378 1.41962 1.43647 1.53064 2.21221 2.41646 2.88152 2.94922 3.05837 3.16527 3.61254 3.81087 3.87181 3.91891 4.03088 4.05670 4.07629 4.10595 4.12646 4.22143 4.28975 4.39173 4.47603 4.62952 4.65274 4.68539 4.74427 4.76697 4.83799 4.87972 4.92177 5.01079 5.02762 5.05330 5.14313 5.18768 5.19059 5.26465 5.31228 5.33400 5.36584 5.39442 5.55920 5.59054 5.83198 5.91841 5.95666 6.25489 6.30200 6.63416 6.78284 6.86561 7.40399 8.91043 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.003705 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.607669 B = 7556.049980 C = 7993.574511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.160 3.840 3 H 0.062 0.938 4 C -0.178 4.178 5 C -0.156 4.156 6 C -0.175 4.175 7 N -0.552 5.552 8 C 0.522 3.478 9 O -0.532 6.532 10 C 0.496 3.504 11 O -0.566 6.566 12 N -0.582 5.582 13 C 0.107 3.893 14 C -0.127 4.127 15 C -0.102 4.102 16 C 0.036 3.964 17 H -0.019 1.019 18 C -0.533 4.533 19 H 0.067 0.933 20 C 0.010 3.990 21 N -0.919 5.919 22 Si 0.960 3.040 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.258 1.258 26 C 0.125 3.875 27 C 0.076 3.924 28 C -0.194 4.194 29 C -0.188 4.188 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.041 0.959 41 H 0.108 0.892 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.260 0.740 45 H 0.078 0.922 46 H 0.055 0.945 47 H 0.173 0.827 48 H 0.098 0.902 49 H 0.124 0.876 50 H 0.129 0.871 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.835 -20.322 11.874 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.057 3.943 3 H 0.080 0.920 4 C -0.197 4.197 5 C -0.193 4.193 6 C -0.212 4.212 7 N -0.283 5.283 8 C 0.305 3.695 9 O -0.409 6.409 10 C 0.279 3.721 11 O -0.446 6.446 12 N -0.315 5.315 13 C -0.014 4.014 14 C -0.165 4.165 15 C -0.140 4.140 16 C 0.016 3.984 17 H 0.000 1.000 18 C -0.571 4.571 19 H 0.085 0.915 20 C -0.190 4.190 21 N -0.558 5.558 22 Si 0.785 3.215 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.182 1.182 26 C 0.004 3.996 27 C -0.026 4.026 28 C -0.231 4.231 29 C -0.226 4.226 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.111 0.889 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.060 0.940 41 H 0.127 0.873 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.073 0.927 47 H 0.190 0.810 48 H 0.116 0.884 49 H 0.142 0.858 50 H 0.147 0.853 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.156 -19.957 11.123 24.614 hybrid contribution 0.383 1.842 -0.766 2.031 sum -8.773 -18.115 10.357 22.636 Atomic orbital electron populations 1.22219 0.92397 1.04184 1.02608 1.20851 0.96104 0.94677 0.82658 0.91969 1.22488 1.00938 1.05852 0.90374 1.23289 0.98622 0.96085 1.01281 1.23047 1.04066 0.98400 0.95719 1.47510 1.47733 1.11458 1.21579 1.20220 0.79574 0.84934 0.84723 1.90651 1.60414 1.65664 1.24202 1.20742 0.82969 0.89995 0.78370 1.90777 1.58523 1.40710 1.54546 1.48579 1.16730 1.10029 1.56127 1.22094 0.92367 0.86079 1.00883 1.21984 0.95527 0.98944 1.00011 1.21507 0.98452 0.93313 1.00730 1.18944 0.91453 0.94361 0.93606 1.00045 1.21490 1.08533 0.91185 1.35879 0.91452 1.25919 0.95293 1.03157 0.94586 1.70087 1.19126 1.28032 1.38511 0.85525 0.78003 0.78908 0.79062 1.20366 1.21391 1.18183 1.21923 0.97509 0.81149 0.99049 1.22072 1.05014 0.80155 0.95405 1.23700 0.96122 1.01071 1.02213 1.23283 0.97290 1.03482 0.98545 0.89470 0.94048 0.88888 0.87185 0.86918 0.87047 0.87793 0.88960 0.88183 0.90049 0.93979 0.87347 0.92592 0.91381 0.93091 0.90374 0.92672 0.81023 0.88418 0.85756 0.85291 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 7.79 71.98 0.56 -2.29 16 2 C 0.16 3.66 2.95 44.99 0.13 3.79 16 3 H 0.06 1.93 6.12 -2.38 -0.01 1.92 16 4 C -0.18 -2.86 5.24 -10.79 -0.06 -2.92 16 5 C -0.16 -1.56 9.57 30.62 0.29 -1.27 16 6 C -0.17 -2.43 9.90 30.62 0.30 -2.13 16 7 N -0.55 -14.44 2.73 -775.59 -2.11 -16.56 16 8 C 0.52 19.17 5.24 87.27 0.46 19.63 16 9 O -0.53 -21.67 12.86 -3.24 -0.04 -21.71 16 10 C 0.50 22.04 5.52 87.27 0.48 22.52 16 11 O -0.57 -30.35 16.36 -3.26 -0.05 -30.40 16 12 N -0.58 -24.27 2.97 -819.61 -2.43 -26.70 16 13 C 0.11 3.30 6.38 86.51 0.55 3.86 16 14 C -0.13 -4.00 6.10 30.82 0.19 -3.81 16 15 C -0.10 -3.94 5.10 30.62 0.16 -3.78 16 16 C 0.04 1.81 2.25 -11.46 -0.03 1.78 16 17 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 18 C -0.53 -29.07 8.56 25.60 0.22 -28.85 16 19 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 20 C 0.01 0.54 5.30 84.65 0.45 0.99 16 21 N -0.92 -56.29 11.39 21.45 0.24 -56.05 16 22 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 26 C 0.12 6.22 5.38 86.36 0.46 6.68 16 27 C 0.08 1.46 5.47 44.99 0.25 1.71 16 28 C -0.19 -4.12 9.62 30.62 0.29 -3.82 16 29 C -0.19 -3.93 9.88 30.62 0.30 -3.63 16 30 H 0.09 1.31 7.07 -2.39 -0.02 1.30 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.19 6.50 -2.39 -0.02 1.18 16 33 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.11 0.92 5.85 -2.39 -0.01 0.90 16 35 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 1.38 7.60 -2.39 -0.02 1.36 16 38 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 39 H 0.08 2.29 6.31 -2.39 -0.02 2.27 16 40 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 43 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 45 H 0.08 4.68 5.15 -2.38 -0.01 4.67 16 46 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 47 H 0.17 1.99 7.77 -2.39 -0.02 1.97 16 48 H 0.10 2.89 5.25 -3.76 -0.02 2.87 16 49 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 51 H 0.06 1.78 7.58 -2.38 -0.02 1.76 16 Total: -1.00 -76.13 394.55 3.56 -72.57 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.91 Total: 24.33 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 5.02 Total: 8.47 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -4.30 Total: -99.30 kcal Atomic # 8 Polarization: -52.02 SS G_CDS: -0.09 Total: -52.11 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -76.13 3.56 -72.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328164998.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.267 kcal (2) G-P(sol) polarization free energy of solvation -76.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds