Wall clock time and date at job start Tue Mar 31 2020 19:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.68667 * 2 1 4 4 C 1.54496 * 111.07223 * 236.79411 * 2 1 3 5 5 N 1.47401 * 107.14967 * 219.11283 * 4 2 1 6 6 C 1.34772 * 126.02421 * 178.40384 * 5 4 2 7 7 O 1.21349 * 120.00153 * 179.69118 * 6 5 4 8 8 C 1.49449 * 119.99922 * 359.68434 * 6 5 4 9 9 O 1.21352 * 120.00342 * 0.02562 * 8 6 5 10 10 N 1.34778 * 120.00207 * 180.02562 * 8 6 5 11 11 C 1.46500 * 120.00216 * 180.02562 * 10 8 6 12 12 C 1.53001 * 109.46893 * 184.67135 * 11 10 8 13 13 C 1.50700 * 115.54952 * 297.92994 * 12 11 10 14 14 H 1.07995 * 120.00049 * 95.21415 * 13 12 11 15 15 C 1.37879 * 120.00021 * 275.21949 * 13 12 11 16 16 N 1.31522 * 119.99986 * 7.13089 * 15 13 12 17 17 Si 1.86801 * 120.00082 * 187.13424 * 15 13 12 18 18 H 1.48503 * 109.46706 * 270.00062 * 17 15 13 19 19 H 1.48499 * 109.47022 * 29.99380 * 17 15 13 20 20 H 1.48500 * 109.47298 * 149.99837 * 17 15 13 21 21 C 1.52998 * 117.50431 * 83.60435 * 12 11 10 22 22 C 1.53004 * 117.49824 * 152.26867 * 12 11 10 23 23 C 1.46522 * 107.95345 * 358.13678 * 5 4 2 24 24 H 1.09007 * 108.48642 * 269.91812 * 23 5 4 25 25 C 1.51176 * 113.01177 * 149.45419 * 23 5 4 26 26 C 1.51585 * 111.96072 * 294.19771 * 25 23 5 27 27 C 1.53247 * 108.12520 * 300.47622 * 26 25 23 28 28 C 1.52677 * 108.68141 * 63.13065 * 27 26 25 29 29 C 1.53015 * 110.68703 * 298.03600 * 28 27 26 30 30 H 1.08992 * 112.98104 * 287.55649 * 29 28 27 31 31 H 1.09008 * 109.47106 * 296.71858 * 1 2 3 32 32 H 1.08994 * 109.47464 * 56.72179 * 1 2 3 33 33 H 1.09003 * 109.46816 * 176.72156 * 1 2 3 34 34 H 1.09001 * 110.01908 * 99.66540 * 4 2 1 35 35 H 1.09010 * 109.79143 * 338.42650 * 4 2 1 36 36 H 0.96999 * 119.99781 * 359.97438 * 10 8 6 37 37 H 1.08991 * 109.47353 * 64.66707 * 11 10 8 38 38 H 1.09003 * 109.46718 * 304.66608 * 11 10 8 39 39 H 0.96994 * 119.99662 * 355.39833 * 16 15 13 40 40 H 1.08990 * 117.50357 * 214.99924 * 21 12 11 41 41 H 1.08998 * 117.49299 * 0.02562 * 21 12 11 42 42 H 1.09002 * 117.49663 * 359.96791 * 22 12 11 43 43 H 1.08999 * 117.50147 * 144.99153 * 22 12 11 44 44 H 1.09000 * 109.12559 * 54.06786 * 25 23 5 45 45 H 1.09001 * 109.12914 * 173.16278 * 25 23 5 46 46 H 1.08996 * 109.86780 * 180.80526 * 26 25 23 47 47 H 1.09006 * 109.80599 * 60.10426 * 26 25 23 48 48 H 1.08998 * 109.60046 * 303.36883 * 27 26 25 49 49 H 1.09000 * 109.73439 * 182.96889 * 27 26 25 50 50 H 1.08996 * 109.23466 * 177.72450 * 28 27 26 51 51 H 1.08996 * 109.20050 * 58.32828 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9151 1.0197 0.0000 4 6 2.0855 -0.7895 -1.2062 5 7 3.2615 -1.5399 -0.7302 6 6 4.0178 -2.3784 -1.4660 7 8 4.9695 -2.9376 -0.9619 8 6 3.6842 -2.6197 -2.9026 9 8 2.7327 -2.0603 -3.4069 10 7 4.4401 -3.4586 -3.6383 11 6 4.1134 -3.6947 -5.0468 12 6 5.0467 -4.7662 -5.6140 13 6 6.5129 -4.4176 -5.6133 14 1 7.1443 -4.7408 -4.7990 15 6 7.0481 -3.6860 -6.6523 16 7 6.2584 -3.1730 -7.5705 17 14 8.8946 -3.4236 -6.7558 18 1 9.2602 -2.1845 -6.0233 19 1 9.5943 -4.5832 -6.1468 20 1 9.2973 -3.2942 -8.1793 21 6 4.6685 -6.2297 -5.3777 22 6 4.5235 -5.6171 -6.7731 23 6 3.4673 -1.2085 0.6821 24 1 4.1297 -0.3448 0.7416 25 6 4.0818 -2.3420 1.4716 26 6 3.1524 -3.5357 1.5667 27 6 1.8609 -3.0806 2.2548 28 6 1.1848 -2.0284 1.3791 29 6 2.0832 -0.8001 1.2191 30 1 2.1463 -0.1981 2.1255 31 1 -0.3634 0.4621 0.9180 32 1 -0.3634 0.5638 -0.8591 33 1 -0.3633 -1.0260 -0.0588 34 1 2.3801 -0.1016 -1.9988 35 1 1.3281 -1.4815 -1.5748 36 1 5.2009 -3.9056 -3.2354 37 1 4.2385 -2.7693 -5.6088 38 1 3.0803 -4.0326 -5.1284 39 1 5.3077 -3.3646 -7.5546 40 1 5.4799 -6.9404 -5.2217 41 1 3.7545 -6.4292 -4.8184 42 1 3.5142 -5.4138 -7.1310 43 1 5.2397 -5.9247 -7.5350 44 1 5.0007 -2.6621 0.9806 45 1 4.3185 -1.9905 2.4759 46 1 3.6222 -4.3251 2.1533 47 1 2.9246 -3.9070 0.5675 48 1 2.0971 -2.6499 3.2277 49 1 1.1931 -3.9324 2.3844 50 1 0.2443 -1.7277 1.8405 51 1 0.9824 -2.4556 0.3970 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330223995.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:36 Heat of formation + Delta-G solvation = -59.050829 kcal Electronic energy + Delta-G solvation = -30544.573958 eV Core-core repulsion = 26636.818594 eV Total energy + Delta-G solvation = -3907.755365 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.30584 -39.42324 -37.83369 -37.00389 -35.48963 -33.96383 -33.19399 -31.94361 -30.28177 -29.32567 -27.23199 -26.56575 -24.97844 -23.88838 -23.28787 -22.12583 -21.37818 -20.54837 -19.87266 -19.58862 -18.77477 -17.39732 -16.70784 -16.47615 -16.30597 -15.53706 -15.34496 -14.95364 -14.81132 -14.40254 -14.14440 -13.77331 -13.64325 -13.51411 -13.25609 -13.04431 -12.83835 -12.80593 -12.59251 -12.55686 -12.41487 -12.32492 -11.78408 -11.71628 -11.58602 -11.28537 -11.10933 -10.99480 -10.91339 -10.82595 -10.60426 -10.52357 -10.19982 -10.15356 -10.09694 -9.73131 -9.05225 -8.80655 -8.67285 -8.51363 -8.45332 -8.31596 -6.42211 -4.18213 1.78782 2.55065 3.41334 3.43866 3.57881 3.59492 3.76377 4.16680 4.31444 4.42788 4.46283 4.74288 4.82642 4.86763 4.93737 5.03649 5.11373 5.14124 5.22323 5.26240 5.26595 5.34418 5.38453 5.43646 5.56983 5.60921 5.71052 5.75258 5.78316 5.83902 5.90586 5.97315 6.00327 6.05038 6.08137 6.11849 6.13882 6.17277 6.26777 6.28607 6.48693 6.49906 6.54542 6.80322 6.91123 7.10178 7.18267 7.32163 7.74950 8.13704 8.14433 8.33584 8.50103 8.79438 9.57704 10.97184 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016718 B = 0.003049 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.471189 B = 9179.804042 C = 9339.639093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 H 0.083 0.917 4 C 0.114 3.886 5 N -0.587 5.587 6 C 0.525 3.475 7 O -0.516 6.516 8 C 0.496 3.504 9 O -0.537 6.537 10 N -0.664 5.664 11 C 0.156 3.844 12 C 0.003 3.997 13 C -0.577 4.577 14 H 0.055 0.945 15 C 0.030 3.970 16 N -0.900 5.900 17 Si 1.068 2.932 18 H -0.288 1.288 19 H -0.288 1.288 20 H -0.284 1.284 21 C -0.192 4.192 22 C -0.170 4.170 23 C 0.145 3.855 24 H 0.068 0.932 25 C -0.138 4.138 26 C -0.111 4.111 27 C -0.121 4.121 28 C -0.111 4.111 29 C -0.093 4.093 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.415 0.585 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.275 0.725 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.059 0.941 50 H 0.064 0.936 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.950 4.539 18.815 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.127 4.127 3 H 0.101 0.899 4 C -0.008 4.008 5 N -0.322 5.322 6 C 0.309 3.691 7 O -0.392 6.392 8 C 0.275 3.725 9 O -0.416 6.416 10 N -0.314 5.314 11 C 0.033 3.967 12 C 0.002 3.998 13 C -0.615 4.615 14 H 0.074 0.926 15 C -0.176 4.176 16 N -0.534 5.534 17 Si 0.897 3.103 18 H -0.214 1.214 19 H -0.214 1.214 20 H -0.210 1.210 21 C -0.230 4.230 22 C -0.208 4.208 23 C 0.042 3.958 24 H 0.086 0.914 25 C -0.175 4.175 26 C -0.149 4.149 27 C -0.159 4.159 28 C -0.149 4.149 29 C -0.112 4.112 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.251 0.749 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.117 0.883 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.078 0.922 50 H 0.083 0.917 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.859 5.327 17.739 20.982 hybrid contribution -0.876 -0.898 0.916 1.554 sum -10.736 4.429 18.655 21.974 Atomic orbital electron populations 1.21808 0.93707 1.02555 1.01946 1.22576 0.96576 0.99275 0.94309 0.89875 1.22319 0.87272 0.95195 0.96033 1.48009 1.29771 1.43613 1.10770 1.20068 0.82536 0.79193 0.87312 1.90674 1.27823 1.48483 1.72191 1.19926 0.84180 0.81510 0.86854 1.90695 1.28838 1.49330 1.72719 1.45756 1.30620 1.42916 1.12135 1.21200 0.96418 1.00210 0.78844 1.19310 0.95495 0.86954 0.98041 1.21234 0.90634 1.39854 1.09761 0.92648 1.25783 1.06448 0.92614 0.92778 1.70721 1.07217 1.39389 1.36093 0.83550 0.74269 0.76246 0.76280 1.21438 1.21361 1.20974 1.22910 1.01027 0.99117 0.99920 1.22757 1.00020 1.06303 0.91692 1.21141 0.96519 0.97785 0.80345 0.91404 1.21314 1.01443 0.94914 0.99850 1.21220 0.95443 0.97437 1.00787 1.21585 0.97196 0.98404 0.98710 1.21575 0.97890 0.94827 1.00577 1.22484 0.93984 0.96860 0.97823 0.88299 0.92203 0.92268 0.91840 0.90424 0.90274 0.74855 0.91266 0.93535 0.91333 0.89876 0.91372 0.91235 0.89423 0.88331 0.91418 0.91928 0.92231 0.92030 0.92207 0.91708 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.29 37.16 0.31 -0.72 16 2 C -0.11 -0.93 3.33 -88.25 -0.29 -1.22 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 4 C 0.11 1.39 4.36 -2.76 -0.01 1.38 16 5 N -0.59 -8.11 2.99 -165.41 -0.50 -8.61 16 6 C 0.53 9.01 7.19 -11.59 -0.08 8.93 16 7 O -0.52 -9.51 14.00 5.50 0.08 -9.44 16 8 C 0.50 9.59 7.86 -11.58 -0.09 9.50 16 9 O -0.54 -10.93 14.18 5.49 0.08 -10.85 16 10 N -0.66 -13.68 5.45 -60.73 -0.33 -14.01 16 11 C 0.16 3.48 5.43 -4.04 -0.02 3.46 16 12 C 0.00 0.07 0.99 -155.66 -0.15 -0.09 16 13 C -0.58 -15.19 8.44 -34.44 -0.29 -15.48 16 14 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 15 C 0.03 0.83 5.39 -17.82 -0.10 0.73 16 16 N -0.90 -25.82 13.57 55.43 0.75 -25.07 16 17 Si 1.07 24.57 29.91 -169.99 -5.08 19.48 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.19 -4.00 9.96 -26.69 -0.27 -4.27 16 22 C -0.17 -3.74 8.74 -26.69 -0.23 -3.97 16 23 C 0.15 1.62 2.89 -68.33 -0.20 1.42 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 25 C -0.14 -1.56 4.71 -28.37 -0.13 -1.69 16 26 C -0.11 -1.23 5.85 -27.32 -0.16 -1.39 16 27 C -0.12 -1.06 5.91 -26.77 -0.16 -1.22 16 28 C -0.11 -0.95 3.67 -26.89 -0.10 -1.05 16 29 C -0.09 -0.78 3.49 -88.52 -0.31 -1.09 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.48 6.23 -51.93 -0.32 0.16 16 34 H 0.08 1.04 7.76 -51.93 -0.40 0.64 16 35 H 0.08 1.04 6.91 -51.92 -0.36 0.68 16 36 H 0.41 8.60 7.70 -40.82 -0.31 8.28 16 37 H 0.07 1.72 7.82 -51.93 -0.41 1.31 16 38 H 0.05 0.99 8.11 -51.93 -0.42 0.57 16 39 H 0.28 7.81 6.19 -40.82 -0.25 7.55 16 40 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 44 H 0.10 1.40 5.65 -51.93 -0.29 1.11 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.80 7.51 -51.93 -0.39 0.41 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.06 0.46 7.42 -51.93 -0.39 0.07 16 51 H 0.07 0.69 6.28 -51.93 -0.33 0.36 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -29.26 389.14 -10.01 -39.27 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -8.58 Total: 10.13 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -2.29 Total: -6.77 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -0.07 Total: -47.68 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.15 Total: -20.28 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.08 Total: 19.48 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.26 -10.01 -39.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330223995.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.783 kcal (2) G-P(sol) polarization free energy of solvation -29.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds