Wall clock time and date at job start Tue Mar 31 2020 19:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.68667 * 2 1 4 4 C 1.54496 * 111.07223 * 236.79411 * 2 1 3 5 5 N 1.47401 * 107.14967 * 219.11283 * 4 2 1 6 6 C 1.34772 * 126.02421 * 178.40384 * 5 4 2 7 7 O 1.21349 * 120.00153 * 179.69118 * 6 5 4 8 8 C 1.49449 * 119.99922 * 359.68434 * 6 5 4 9 9 O 1.21352 * 120.00342 * 0.02562 * 8 6 5 10 10 N 1.34778 * 120.00207 * 180.02562 * 8 6 5 11 11 C 1.46500 * 120.00216 * 180.02562 * 10 8 6 12 12 C 1.53001 * 109.46893 * 184.67135 * 11 10 8 13 13 C 1.50700 * 115.54952 * 297.92994 * 12 11 10 14 14 H 1.07995 * 120.00049 * 95.21415 * 13 12 11 15 15 C 1.37879 * 120.00021 * 275.21949 * 13 12 11 16 16 N 1.31522 * 119.99986 * 7.13089 * 15 13 12 17 17 Si 1.86801 * 120.00082 * 187.13424 * 15 13 12 18 18 H 1.48503 * 109.46706 * 270.00062 * 17 15 13 19 19 H 1.48499 * 109.47022 * 29.99380 * 17 15 13 20 20 H 1.48500 * 109.47298 * 149.99837 * 17 15 13 21 21 C 1.52998 * 117.50431 * 83.60435 * 12 11 10 22 22 C 1.53004 * 117.49824 * 152.26867 * 12 11 10 23 23 C 1.46522 * 107.95345 * 358.13678 * 5 4 2 24 24 H 1.09007 * 108.48642 * 269.91812 * 23 5 4 25 25 C 1.51176 * 113.01177 * 149.45419 * 23 5 4 26 26 C 1.51585 * 111.96072 * 294.19771 * 25 23 5 27 27 C 1.53247 * 108.12520 * 300.47622 * 26 25 23 28 28 C 1.52677 * 108.68141 * 63.13065 * 27 26 25 29 29 C 1.53015 * 110.68703 * 298.03600 * 28 27 26 30 30 H 1.08992 * 112.98104 * 287.55649 * 29 28 27 31 31 H 1.09008 * 109.47106 * 296.71858 * 1 2 3 32 32 H 1.08994 * 109.47464 * 56.72179 * 1 2 3 33 33 H 1.09003 * 109.46816 * 176.72156 * 1 2 3 34 34 H 1.09001 * 110.01908 * 99.66540 * 4 2 1 35 35 H 1.09010 * 109.79143 * 338.42650 * 4 2 1 36 36 H 0.96999 * 119.99781 * 359.97438 * 10 8 6 37 37 H 1.08991 * 109.47353 * 64.66707 * 11 10 8 38 38 H 1.09003 * 109.46718 * 304.66608 * 11 10 8 39 39 H 0.96994 * 119.99662 * 355.39833 * 16 15 13 40 40 H 1.08990 * 117.50357 * 214.99924 * 21 12 11 41 41 H 1.08998 * 117.49299 * 0.02562 * 21 12 11 42 42 H 1.09002 * 117.49663 * 359.96791 * 22 12 11 43 43 H 1.08999 * 117.50147 * 144.99153 * 22 12 11 44 44 H 1.09000 * 109.12559 * 54.06786 * 25 23 5 45 45 H 1.09001 * 109.12914 * 173.16278 * 25 23 5 46 46 H 1.08996 * 109.86780 * 180.80526 * 26 25 23 47 47 H 1.09006 * 109.80599 * 60.10426 * 26 25 23 48 48 H 1.08998 * 109.60046 * 303.36883 * 27 26 25 49 49 H 1.09000 * 109.73439 * 182.96889 * 27 26 25 50 50 H 1.08996 * 109.23466 * 177.72450 * 28 27 26 51 51 H 1.08996 * 109.20050 * 58.32828 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9151 1.0197 0.0000 4 6 2.0855 -0.7895 -1.2062 5 7 3.2615 -1.5399 -0.7302 6 6 4.0178 -2.3784 -1.4660 7 8 4.9695 -2.9376 -0.9619 8 6 3.6842 -2.6197 -2.9026 9 8 2.7327 -2.0603 -3.4069 10 7 4.4401 -3.4586 -3.6383 11 6 4.1134 -3.6947 -5.0468 12 6 5.0467 -4.7662 -5.6140 13 6 6.5129 -4.4176 -5.6133 14 1 7.1443 -4.7408 -4.7990 15 6 7.0481 -3.6860 -6.6523 16 7 6.2584 -3.1730 -7.5705 17 14 8.8946 -3.4236 -6.7558 18 1 9.2602 -2.1845 -6.0233 19 1 9.5943 -4.5832 -6.1468 20 1 9.2973 -3.2942 -8.1793 21 6 4.6685 -6.2297 -5.3777 22 6 4.5235 -5.6171 -6.7731 23 6 3.4673 -1.2085 0.6821 24 1 4.1297 -0.3448 0.7416 25 6 4.0818 -2.3420 1.4716 26 6 3.1524 -3.5357 1.5667 27 6 1.8609 -3.0806 2.2548 28 6 1.1848 -2.0284 1.3791 29 6 2.0832 -0.8001 1.2191 30 1 2.1463 -0.1981 2.1255 31 1 -0.3634 0.4621 0.9180 32 1 -0.3634 0.5638 -0.8591 33 1 -0.3633 -1.0260 -0.0588 34 1 2.3801 -0.1016 -1.9988 35 1 1.3281 -1.4815 -1.5748 36 1 5.2009 -3.9056 -3.2354 37 1 4.2385 -2.7693 -5.6088 38 1 3.0803 -4.0326 -5.1284 39 1 5.3077 -3.3646 -7.5546 40 1 5.4799 -6.9404 -5.2217 41 1 3.7545 -6.4292 -4.8184 42 1 3.5142 -5.4138 -7.1310 43 1 5.2397 -5.9247 -7.5350 44 1 5.0007 -2.6621 0.9806 45 1 4.3185 -1.9905 2.4759 46 1 3.6222 -4.3251 2.1533 47 1 2.9246 -3.9070 0.5675 48 1 2.0971 -2.6499 3.2277 49 1 1.1931 -3.9324 2.3844 50 1 0.2443 -1.7277 1.8405 51 1 0.9824 -2.4556 0.3970 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330223995.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:35 Heat of formation + Delta-G solvation = -75.547335 kcal Electronic energy + Delta-G solvation = -30545.289301 eV Core-core repulsion = 26636.818594 eV Total energy + Delta-G solvation = -3908.470707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.39331 -40.81000 -39.24757 -38.74297 -36.39812 -35.33662 -34.41903 -33.97734 -31.19403 -30.07466 -28.81451 -27.60112 -26.99563 -25.15917 -24.11164 -23.25609 -22.98151 -21.68546 -21.59024 -20.69607 -19.97735 -18.90468 -18.25744 -17.80594 -17.58211 -16.79035 -16.49531 -16.19775 -16.13331 -15.69682 -15.61092 -15.31074 -14.97287 -14.73290 -14.64454 -14.33753 -14.27079 -13.89227 -13.64899 -13.60403 -13.51926 -13.36606 -13.20843 -12.89120 -12.68460 -12.53944 -12.36883 -12.33216 -12.25677 -11.97210 -11.95836 -11.78741 -11.54893 -11.33825 -11.03488 -10.92903 -10.64376 -10.51852 -10.48653 -10.24325 -10.15348 -9.78865 -8.56618 -6.32080 0.31843 1.23489 1.53540 1.60089 1.77685 2.09481 2.42785 2.55772 3.12470 3.19925 3.33978 3.44730 3.54672 3.69871 3.96240 3.99329 4.08349 4.12193 4.27194 4.28494 4.36746 4.38493 4.44839 4.48642 4.53629 4.56226 4.63021 4.66015 4.70006 4.80205 4.81125 4.87935 4.92603 5.01583 5.05736 5.08273 5.14529 5.16873 5.20578 5.21396 5.26507 5.29872 5.38541 5.42281 5.45847 5.51546 5.60404 6.05964 6.10389 6.21367 6.26081 6.66662 6.67635 6.93255 7.49739 8.83626 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016718 B = 0.003049 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.471189 B = 9179.804042 C = 9339.639093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 H 0.098 0.902 4 C 0.108 3.892 5 N -0.578 5.578 6 C 0.523 3.477 7 O -0.535 6.535 8 C 0.493 3.507 9 O -0.550 6.550 10 N -0.670 5.670 11 C 0.172 3.828 12 C -0.024 4.024 13 C -0.580 4.580 14 H 0.047 0.953 15 C -0.015 4.015 16 N -0.928 5.928 17 Si 1.108 2.892 18 H -0.282 1.282 19 H -0.272 1.272 20 H -0.284 1.284 21 C -0.167 4.167 22 C -0.169 4.169 23 C 0.133 3.867 24 H 0.076 0.924 25 C -0.134 4.134 26 C -0.112 4.112 27 C -0.115 4.115 28 C -0.111 4.111 29 C -0.079 4.079 30 H 0.134 0.866 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.413 0.587 37 H 0.036 0.964 38 H 0.056 0.944 39 H 0.267 0.733 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.095 0.905 46 H 0.063 0.937 47 H 0.025 0.975 48 H 0.083 0.917 49 H 0.063 0.937 50 H 0.089 0.911 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.064 5.341 21.778 25.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 H 0.116 0.884 4 C -0.014 4.014 5 N -0.311 5.311 6 C 0.306 3.694 7 O -0.413 6.413 8 C 0.273 3.727 9 O -0.429 6.429 10 N -0.319 5.319 11 C 0.048 3.952 12 C -0.025 4.025 13 C -0.618 4.618 14 H 0.065 0.935 15 C -0.216 4.216 16 N -0.563 5.563 17 Si 0.932 3.068 18 H -0.208 1.208 19 H -0.197 1.197 20 H -0.210 1.210 21 C -0.204 4.204 22 C -0.207 4.207 23 C 0.032 3.968 24 H 0.094 0.906 25 C -0.172 4.172 26 C -0.149 4.149 27 C -0.153 4.153 28 C -0.148 4.148 29 C -0.097 4.097 30 H 0.152 0.848 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.250 0.750 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.114 0.886 46 H 0.082 0.918 47 H 0.044 0.956 48 H 0.102 0.898 49 H 0.081 0.919 50 H 0.108 0.892 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.008 6.139 20.736 24.266 hybrid contribution -0.582 -1.153 0.030 1.292 sum -11.590 4.986 20.766 24.298 Atomic orbital electron populations 1.21803 0.92294 1.02494 1.03117 1.22570 0.97552 0.99221 0.92244 0.88399 1.22464 0.86357 0.94792 0.97769 1.48122 1.29108 1.41905 1.11959 1.19614 0.83108 0.80302 0.86417 1.90676 1.28802 1.49718 1.72118 1.20438 0.83579 0.80645 0.88003 1.90675 1.29269 1.49530 1.73428 1.45715 1.30980 1.43640 1.11608 1.20855 0.96653 0.98275 0.79383 1.19317 0.94497 0.88668 0.99981 1.21476 0.92216 1.39033 1.09078 0.93478 1.26950 1.09553 0.92487 0.92640 1.70817 1.06990 1.41171 1.37353 0.83023 0.70559 0.76905 0.76315 1.20838 1.19670 1.21002 1.22915 1.01831 0.96930 0.98761 1.22705 1.00310 1.06012 0.91641 1.21508 0.98870 0.97913 0.78550 0.90625 1.21265 0.99940 0.95095 1.00900 1.21199 0.97000 0.97472 0.99261 1.21560 0.95679 0.98734 0.99309 1.21584 0.99019 0.94703 0.99488 1.22559 0.91493 0.96989 0.98704 0.84803 0.89818 0.92478 0.92387 0.92084 0.91622 0.75019 0.94607 0.92535 0.92281 0.89725 0.88997 0.89556 0.91276 0.91692 0.88613 0.91805 0.95596 0.89828 0.91867 0.89246 0.94022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.29 71.98 0.60 -1.00 16 2 C -0.10 -1.41 3.33 -9.26 -0.03 -1.44 16 3 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 4 C 0.11 2.61 4.36 86.72 0.38 2.99 16 5 N -0.58 -16.00 2.99 -795.61 -2.38 -18.38 16 6 C 0.52 18.54 7.19 87.27 0.63 19.17 16 7 O -0.54 -20.48 14.00 -3.25 -0.05 -20.53 16 8 C 0.49 19.79 7.86 87.27 0.69 20.47 16 9 O -0.55 -23.17 14.18 -3.25 -0.05 -23.22 16 10 N -0.67 -28.53 5.45 -464.41 -2.53 -31.06 16 11 C 0.17 7.88 5.43 86.38 0.47 8.35 16 12 C -0.02 -1.13 0.99 -52.93 -0.05 -1.18 16 13 C -0.58 -31.09 8.44 25.60 0.22 -30.87 16 14 H 0.05 2.54 7.82 -2.91 -0.02 2.52 16 15 C -0.02 -0.85 5.39 84.65 0.46 -0.39 16 16 N -0.93 -54.56 13.57 21.45 0.29 -54.27 16 17 Si 1.11 50.02 29.91 68.60 2.05 52.07 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 C -0.17 -6.82 9.96 30.62 0.30 -6.51 16 22 C -0.17 -7.45 8.74 30.62 0.27 -7.18 16 23 C 0.13 2.74 2.89 44.72 0.13 2.87 16 24 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 25 C -0.13 -2.87 4.71 29.54 0.14 -2.73 16 26 C -0.11 -2.37 5.85 30.21 0.18 -2.20 16 27 C -0.12 -1.69 5.91 30.57 0.18 -1.51 16 28 C -0.11 -1.55 3.67 30.49 0.11 -1.44 16 29 C -0.08 -1.04 3.49 -9.43 -0.03 -1.07 16 30 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.75 6.23 -2.39 -0.01 0.73 16 34 H 0.06 1.67 7.76 -2.39 -0.02 1.65 16 35 H 0.07 1.76 6.91 -2.38 -0.02 1.75 16 36 H 0.41 17.77 7.70 -92.71 -0.71 17.05 16 37 H 0.04 1.86 7.82 -2.39 -0.02 1.84 16 38 H 0.06 2.44 8.11 -2.39 -0.02 2.42 16 39 H 0.27 15.65 6.19 -92.71 -0.57 15.07 16 40 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 41 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 42 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 43 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 44 H 0.06 1.86 5.65 -2.39 -0.01 1.85 16 45 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.03 0.71 7.51 -2.38 -0.02 0.69 16 48 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.09 0.87 7.42 -2.39 -0.02 0.86 16 51 H 0.04 0.81 6.28 -2.39 -0.02 0.79 16 Total: -1.00 -65.84 389.14 2.37 -63.48 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: 0.41 Total: 35.61 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 4.62 Total: -3.69 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -4.62 Total: -103.72 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -0.09 Total: -43.75 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.05 Total: 52.07 kcal Total: -65.84 2.37 -63.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330223995.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.072 kcal (2) G-P(sol) polarization free energy of solvation -65.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds