Wall clock time and date at job start Tue Mar 31 2020 19:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.57695 * 2 1 4 4 C 1.54389 * 110.98965 * 236.97943 * 2 1 3 5 5 N 1.47168 * 106.39688 * 269.68358 * 4 2 1 6 6 C 1.34776 * 125.74466 * 162.53398 * 5 4 2 7 7 O 1.21349 * 119.99793 * 179.68738 * 6 5 4 8 8 C 1.49448 * 119.99891 * 359.68902 * 6 5 4 9 9 O 1.21349 * 120.00489 * 5.25738 * 8 6 5 10 10 N 1.34783 * 119.99860 * 185.26041 * 8 6 5 11 11 C 1.46499 * 119.99975 * 175.24553 * 10 8 6 12 12 C 1.52999 * 109.46996 * 183.83586 * 11 10 8 13 13 C 1.50696 * 115.55030 * 306.22504 * 12 11 10 14 14 H 1.08006 * 119.99859 * 144.27265 * 13 12 11 15 15 C 1.37878 * 120.00242 * 324.27897 * 13 12 11 16 16 N 1.31514 * 119.99994 * 349.93433 * 15 13 12 17 17 Si 1.86798 * 120.00133 * 169.93567 * 15 13 12 18 18 H 1.48495 * 109.47424 * 89.99856 * 17 15 13 19 19 H 1.48497 * 109.47316 * 209.99974 * 17 15 13 20 20 H 1.48498 * 109.47222 * 329.99913 * 17 15 13 21 21 C 1.52996 * 117.49801 * 160.56126 * 12 11 10 22 22 C 1.52997 * 117.50155 * 91.90091 * 12 11 10 23 23 C 1.46099 * 108.50743 * 342.26273 * 5 4 2 24 24 H 1.08998 * 104.84072 * 111.78410 * 23 5 4 25 25 C 1.50035 * 113.55910 * 225.76214 * 23 5 4 26 26 C 1.52521 * 112.71921 * 89.93835 * 25 23 5 27 27 C 1.53263 * 108.21443 * 56.01700 * 26 25 23 28 28 C 1.52280 * 108.55583 * 293.94388 * 27 26 25 29 29 C 1.51234 * 109.27256 * 359.53067 * 23 5 4 30 30 H 1.09000 * 109.82733 * 135.62820 * 29 23 5 31 31 H 1.09000 * 109.46820 * 297.05650 * 1 2 3 32 32 H 1.08995 * 109.47198 * 57.05067 * 1 2 3 33 33 H 1.08995 * 109.47527 * 177.05424 * 1 2 3 34 34 H 1.08993 * 110.19252 * 150.40063 * 4 2 1 35 35 H 1.08999 * 109.99874 * 28.85456 * 4 2 1 36 36 H 0.96994 * 119.99847 * 354.97017 * 10 8 6 37 37 H 1.09000 * 109.47064 * 303.83551 * 11 10 8 38 38 H 1.09005 * 109.47317 * 63.83471 * 11 10 8 39 39 H 0.96998 * 120.00182 * 185.02984 * 16 15 13 40 40 H 1.09005 * 117.49868 * 359.97438 * 21 12 11 41 41 H 1.08999 * 117.50132 * 145.01735 * 21 12 11 42 42 H 1.08998 * 117.50368 * 214.98096 * 22 12 11 43 43 H 1.09005 * 117.49367 * 359.97438 * 22 12 11 44 44 H 1.09000 * 108.83438 * 210.77183 * 25 23 5 45 45 H 1.09006 * 108.83752 * 329.10308 * 25 23 5 46 46 H 1.09008 * 109.71265 * 296.34041 * 26 25 23 47 47 H 1.08994 * 109.71627 * 175.70477 * 26 25 23 48 48 H 1.08993 * 109.62112 * 174.21737 * 27 26 25 49 49 H 1.09006 * 109.77420 * 53.75366 * 27 26 25 50 50 H 1.09005 * 108.90722 * 298.36425 * 28 27 26 51 51 H 1.09006 * 108.82850 * 179.79390 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0205 0.0000 4 6 2.0830 -0.7855 -1.2086 5 7 2.2391 -2.1791 -0.7621 6 6 2.3731 -3.2529 -1.5655 7 8 2.5013 -4.3591 -1.0834 8 6 2.3640 -3.0812 -3.0501 9 8 2.3320 -1.9680 -3.5320 10 7 2.3911 -4.1629 -3.8538 11 6 2.2771 -4.0001 -5.3052 12 6 2.2396 -5.3769 -5.9714 13 6 3.3765 -6.3009 -5.6185 14 1 3.2002 -7.3622 -5.5234 15 6 4.6418 -5.7915 -5.4168 16 7 4.9030 -4.5393 -5.7225 17 14 5.9850 -6.8798 -4.7092 18 1 6.7050 -7.5601 -5.8155 19 1 6.9403 -6.0472 -3.9351 20 1 5.3776 -7.8974 -3.8144 21 6 1.6775 -5.4592 -7.3920 22 6 0.8668 -6.0069 -6.2148 23 6 2.2308 -2.2018 0.6986 24 1 1.3017 -2.7057 0.9648 25 6 3.3155 -3.0522 1.2914 26 6 4.6023 -2.2737 1.5448 27 6 4.2689 -1.0762 2.4414 28 6 3.3668 -0.1260 1.6653 29 6 2.0773 -0.7901 1.2189 30 1 1.3483 -0.7719 2.0291 31 1 -0.3633 0.4675 0.9152 32 1 -0.3633 0.5589 -0.8623 33 1 -0.3634 -1.0262 -0.0528 34 1 3.0482 -0.3796 -1.5113 35 1 1.3790 -0.7358 -2.0392 36 1 2.4902 -5.0488 -3.4714 37 1 1.3608 -3.4582 -5.5391 38 1 3.1353 -3.4399 -5.6766 39 1 5.8092 -4.2011 -5.6497 40 1 1.3339 -4.5325 -7.8518 41 1 2.1297 -6.1819 -8.0711 42 1 0.7859 -7.0897 -6.1198 43 1 -0.0097 -5.4405 -5.8998 44 1 2.9622 -3.4651 2.2362 45 1 3.5305 -3.8746 0.6089 46 1 5.0115 -1.9213 0.5979 47 1 5.3283 -2.9156 2.0435 48 1 5.1880 -0.5616 2.7214 49 1 3.7536 -1.4193 3.3386 50 1 3.9030 0.2310 0.7860 51 1 3.1239 0.7259 2.3005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330223996.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:40 Heat of formation + Delta-G solvation = -70.034558 kcal Electronic energy + Delta-G solvation = -30707.272435 eV Core-core repulsion = 26799.040780 eV Total energy + Delta-G solvation = -3908.231655 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.27827 -40.64581 -39.16732 -38.46966 -36.58406 -35.05378 -34.28299 -34.12054 -31.33280 -30.46819 -28.57216 -27.64422 -27.33191 -25.30105 -23.83523 -23.24952 -22.91720 -21.49854 -21.29026 -20.91830 -19.78138 -18.77823 -17.90543 -17.73548 -17.45381 -16.78030 -16.46892 -16.43681 -15.90433 -15.66286 -15.56279 -15.29621 -15.09722 -14.77535 -14.50253 -14.34426 -13.92307 -13.81205 -13.65868 -13.52620 -13.45403 -13.27084 -13.01637 -12.93422 -12.70912 -12.59277 -12.46093 -12.35363 -12.21510 -12.07401 -12.01431 -11.80933 -11.43130 -11.30077 -11.12976 -11.04704 -10.98017 -10.69670 -10.39717 -10.17482 -9.88075 -9.69834 -8.08934 -6.22858 0.42362 1.34057 1.36111 1.41840 1.48770 2.20401 2.36568 2.59783 2.99661 3.32867 3.43757 3.54042 3.65929 3.70146 3.97403 4.01754 4.11204 4.20012 4.26771 4.34566 4.43049 4.47376 4.48971 4.60525 4.66939 4.68179 4.70193 4.73287 4.84788 4.87429 4.92437 4.95115 5.03856 5.05174 5.09843 5.15710 5.17338 5.22840 5.25236 5.28230 5.33556 5.43404 5.47183 5.48763 5.54588 5.57093 5.60586 5.87065 6.11546 6.32574 6.39839 6.73830 6.83069 7.10202 7.40196 8.86201 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014210 B = 0.003731 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.974374 B = 7503.024635 C = 8704.164364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.116 0.884 4 C 0.103 3.897 5 N -0.577 5.577 6 C 0.518 3.482 7 O -0.545 6.545 8 C 0.491 3.509 9 O -0.553 6.553 10 N -0.657 5.657 11 C 0.172 3.828 12 C 0.005 3.995 13 C -0.508 4.508 14 H 0.057 0.943 15 C 0.040 3.960 16 N -0.892 5.892 17 Si 0.938 3.062 18 H -0.273 1.273 19 H -0.291 1.291 20 H -0.268 1.268 21 C -0.188 4.188 22 C -0.188 4.188 23 C 0.144 3.856 24 H 0.048 0.952 25 C -0.136 4.136 26 C -0.117 4.117 27 C -0.112 4.112 28 C -0.110 4.110 29 C -0.074 4.074 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.038 0.962 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.409 0.591 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.260 0.740 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.054 0.946 46 H 0.037 0.963 47 H 0.066 0.934 48 H 0.074 0.926 49 H 0.078 0.922 50 H 0.052 0.948 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.159 11.672 17.268 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.134 0.866 4 C -0.019 4.019 5 N -0.310 5.310 6 C 0.301 3.699 7 O -0.423 6.423 8 C 0.271 3.729 9 O -0.433 6.433 10 N -0.305 5.305 11 C 0.049 3.951 12 C 0.004 3.996 13 C -0.545 4.545 14 H 0.075 0.925 15 C -0.162 4.162 16 N -0.529 5.529 17 Si 0.765 3.235 18 H -0.199 1.199 19 H -0.217 1.217 20 H -0.193 1.193 21 C -0.227 4.227 22 C -0.225 4.225 23 C 0.042 3.958 24 H 0.067 0.933 25 C -0.174 4.174 26 C -0.155 4.155 27 C -0.150 4.150 28 C -0.147 4.147 29 C -0.093 4.093 30 H 0.134 0.866 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.244 0.756 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.073 0.927 46 H 0.055 0.945 47 H 0.085 0.915 48 H 0.092 0.908 49 H 0.097 0.903 50 H 0.071 0.929 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.015 11.938 17.172 21.761 hybrid contribution 1.089 -1.420 -0.374 1.828 sum -4.926 10.518 16.798 20.422 Atomic orbital electron populations 1.21806 0.93335 1.01439 1.03276 1.22526 0.96925 0.99883 0.91873 0.86565 1.22513 1.01494 0.79338 0.98569 1.48132 1.68125 1.07372 1.07346 1.19872 0.78419 0.84142 0.87428 1.90675 1.49964 1.25220 1.76458 1.20174 0.79404 0.85399 0.87909 1.90635 1.51266 1.24561 1.76888 1.45678 1.67694 1.09192 1.07901 1.20897 0.99685 0.97189 0.77366 1.19205 0.92026 0.93267 0.95094 1.20699 0.92755 0.93101 1.47970 0.92451 1.25484 1.00155 0.95758 0.94813 1.69952 1.20173 1.15288 1.47486 0.85841 0.79592 0.79232 0.78875 1.19884 1.21747 1.19265 1.22924 1.05613 1.01600 0.92565 1.22975 0.95253 0.99832 1.04432 1.20365 0.99100 0.98520 0.77823 0.93344 1.21200 0.95811 0.98707 1.01654 1.21458 0.96398 0.98144 0.99457 1.21432 1.00088 0.95336 0.98108 1.21236 0.94351 0.98767 1.00382 1.21425 0.99474 0.90346 0.98038 0.86629 0.89769 0.92100 0.94260 0.92097 0.90518 0.75552 0.94273 0.89905 0.93085 0.90118 0.90466 0.89915 0.89498 0.89432 0.92738 0.94451 0.91535 0.90775 0.90332 0.92941 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.09 71.98 0.65 -1.44 16 2 C -0.09 -1.54 2.93 -9.56 -0.03 -1.57 16 3 H 0.12 1.43 7.74 -2.39 -0.02 1.41 16 4 C 0.10 2.74 5.31 86.72 0.46 3.20 16 5 N -0.58 -17.93 3.22 -804.58 -2.59 -20.53 16 6 C 0.52 20.46 7.68 87.27 0.67 21.13 16 7 O -0.54 -23.40 14.60 -3.24 -0.05 -23.44 16 8 C 0.49 21.56 7.84 87.27 0.68 22.25 16 9 O -0.55 -25.15 14.02 -3.24 -0.05 -25.20 16 10 N -0.66 -30.36 5.30 -464.40 -2.46 -32.82 16 11 C 0.17 8.22 4.76 86.38 0.41 8.63 16 12 C 0.00 0.23 1.99 -52.93 -0.11 0.12 16 13 C -0.51 -26.56 8.26 25.60 0.21 -26.35 16 14 H 0.06 3.00 7.83 -2.91 -0.02 2.98 16 15 C 0.04 2.12 5.16 84.65 0.44 2.55 16 16 N -0.89 -49.43 10.76 21.45 0.23 -49.20 16 17 Si 0.94 43.29 29.55 68.60 2.03 45.32 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 C -0.19 -8.07 9.96 30.62 0.30 -7.77 16 22 C -0.19 -7.62 9.92 30.62 0.30 -7.31 16 23 C 0.14 3.48 2.59 43.54 0.11 3.59 16 24 H 0.05 1.20 8.04 -2.39 -0.02 1.18 16 25 C -0.14 -3.43 5.40 29.48 0.16 -3.27 16 26 C -0.12 -2.55 6.01 30.52 0.18 -2.37 16 27 C -0.11 -1.63 5.94 30.44 0.18 -1.45 16 28 C -0.11 -1.48 5.04 29.95 0.15 -1.33 16 29 C -0.07 -1.16 2.67 -11.01 -0.03 -1.19 16 30 H 0.12 1.28 7.89 -2.39 -0.02 1.26 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 2.31 6.49 -2.39 -0.02 2.30 16 36 H 0.41 19.40 7.41 -92.71 -0.69 18.71 16 37 H 0.04 1.78 8.08 -2.39 -0.02 1.76 16 38 H 0.08 4.54 6.03 -2.38 -0.01 4.52 16 39 H 0.26 14.08 8.32 -92.71 -0.77 13.31 16 40 H 0.08 3.21 8.14 -2.38 -0.02 3.19 16 41 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 42 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 43 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 44 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.05 1.84 5.51 -2.38 -0.01 1.83 16 46 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.08 0.93 8.13 -2.38 -0.02 0.92 16 50 H 0.05 0.85 7.79 -2.38 -0.02 0.83 16 51 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -62.61 394.46 2.10 -60.50 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: 0.23 Total: 37.93 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 4.76 Total: 7.44 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -4.83 Total: -102.54 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -0.09 Total: -48.64 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -62.61 2.10 -60.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330223996.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.530 kcal (2) G-P(sol) polarization free energy of solvation -62.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds