Wall clock time and date at job start Tue Mar 31 2020 17:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 115.55855 * 2 1 4 4 C 1.53005 * 117.51383 * 214.29755 * 2 1 3 5 5 C 1.53008 * 60.00128 * 252.52104 * 4 2 1 6 6 H 1.09000 * 117.51732 * 252.51781 * 5 4 2 7 7 C 1.52992 * 117.49607 * 107.48916 * 5 4 2 8 8 H 1.09004 * 115.55304 * 325.71175 * 7 5 4 9 9 C 1.53001 * 117.51931 * 180.02562 * 7 5 4 10 10 C 1.52994 * 60.00180 * 252.51905 * 9 7 5 11 11 H 1.09007 * 117.51597 * 107.48006 * 10 9 7 12 12 C 1.53004 * 117.50039 * 252.50535 * 10 9 7 13 13 N 1.46492 * 109.46950 * 243.62464 * 12 10 9 14 14 C 1.34784 * 119.99621 * 179.97438 * 13 12 10 15 15 O 1.21350 * 119.99817 * 0.02562 * 14 13 12 16 16 C 1.49449 * 120.00048 * 179.97438 * 14 13 12 17 17 O 1.21354 * 120.00129 * 353.23425 * 16 14 13 18 18 N 1.34776 * 120.00013 * 173.22788 * 16 14 13 19 19 C 1.46918 * 120.63291 * 351.36994 * 18 16 14 20 20 C 1.53198 * 108.77503 * 233.58285 * 19 18 16 21 21 C 1.53031 * 109.31038 * 305.36137 * 20 19 18 22 22 C 1.53043 * 109.52704 * 61.37474 * 21 20 19 23 23 H 1.08996 * 109.49894 * 58.57647 * 22 21 20 24 24 C 1.50705 * 109.49798 * 178.67319 * 22 21 20 25 25 H 1.08007 * 119.99761 * 0.02562 * 24 22 21 26 26 C 1.37878 * 119.99943 * 179.97438 * 24 22 21 27 27 N 1.31513 * 119.99840 * 359.97438 * 26 24 22 28 28 Si 1.86805 * 119.99714 * 180.02562 * 26 24 22 29 29 H 1.48493 * 109.46991 * 60.00063 * 28 26 24 30 30 H 1.48500 * 109.46724 * 179.97438 * 28 26 24 31 31 H 1.48500 * 109.46913 * 299.99766 * 28 26 24 32 32 C 1.46933 * 120.62734 * 171.33910 * 18 16 14 33 33 H 1.08999 * 109.47398 * 274.33185 * 1 2 3 34 34 H 1.09007 * 109.46757 * 34.32659 * 1 2 3 35 35 H 1.08997 * 109.47808 * 154.32493 * 1 2 3 36 36 H 1.08998 * 117.49724 * 145.03409 * 4 2 1 37 37 H 1.08996 * 117.50512 * 0.02562 * 4 2 1 38 38 H 1.09003 * 117.50100 * 145.02337 * 9 7 5 39 39 H 1.09004 * 117.49645 * 0.02562 * 9 7 5 40 40 H 1.09002 * 109.46596 * 123.62050 * 12 10 9 41 41 H 1.08997 * 109.46488 * 3.62451 * 12 10 9 42 42 H 0.96996 * 120.00752 * 359.97438 * 13 12 10 43 43 H 1.09000 * 109.59331 * 113.79583 * 19 18 16 44 44 H 1.09000 * 109.58423 * 353.36766 * 19 18 16 45 45 H 1.08997 * 109.49904 * 185.40621 * 20 19 18 46 46 H 1.09003 * 109.49438 * 65.31628 * 20 19 18 47 47 H 1.09005 * 109.45791 * 181.38574 * 21 20 19 48 48 H 1.08997 * 109.46732 * 301.35679 * 21 20 19 49 49 H 0.97006 * 119.99379 * 180.02562 * 27 26 24 50 50 H 1.08997 * 109.58864 * 246.20125 * 32 18 16 51 51 H 1.08997 * 109.58972 * 6.63439 * 32 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2368 -1.1210 -0.7647 5 6 2.2363 -1.1208 0.7654 6 1 3.1711 -0.8748 1.2692 7 6 1.3587 -2.1560 1.4717 8 1 0.4240 -2.4022 0.9678 9 6 1.3574 -2.1559 3.0017 10 6 2.0650 -3.2766 2.2374 11 1 3.1551 -3.2762 2.2380 12 6 1.4055 -4.6572 2.2371 13 7 2.2813 -5.6168 2.9141 14 6 1.9036 -6.9049 3.0350 15 8 0.8383 -7.2699 2.5826 16 6 2.7971 -7.8841 3.7251 17 8 3.9126 -7.5508 4.0676 18 7 2.3641 -9.1372 3.9673 19 6 0.9605 -9.5025 3.7329 20 6 0.3932 -10.1264 5.0120 21 6 1.2831 -11.2943 5.4432 22 6 2.6934 -10.7801 5.7410 23 1 2.6470 -10.0239 6.5247 24 6 3.5605 -11.9252 6.1969 25 1 3.1475 -12.9208 6.2669 26 6 4.8814 -11.7023 6.5236 27 7 5.3846 -10.4903 6.4369 28 14 5.9564 -13.1220 7.0879 29 1 6.0199 -14.1502 6.0184 30 1 7.3249 -12.6225 7.3757 31 1 5.3790 -13.7216 8.3176 32 6 3.2869 -10.1640 4.4702 33 1 -0.3634 0.0776 1.0247 34 1 -0.3633 0.8488 -0.5796 35 1 -0.3634 -0.9261 -0.4452 36 1 3.1720 -0.8752 -1.2677 37 1 1.6119 -1.8586 -1.2682 38 1 0.4220 -2.4020 3.5043 39 1 1.9817 -1.4179 3.5054 40 1 1.2386 -4.9798 1.2094 41 1 0.4511 -4.6040 2.7608 42 1 3.1329 -5.3252 3.2754 43 1 0.9018 -10.2236 2.9176 44 1 0.3887 -8.6107 3.4767 45 1 -0.6170 -10.4892 4.8227 46 1 0.3686 -9.3764 5.8026 47 1 0.8679 -11.7555 6.3393 48 1 1.3273 -12.0323 4.6422 49 1 6.3140 -10.3336 6.6664 50 1 3.4180 -10.9390 3.7150 51 1 4.2501 -9.7086 4.7004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331878330.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:53 Heat of formation + Delta-G solvation = -21.833472 kcal Electronic energy + Delta-G solvation = -28642.739497 eV Core-core repulsion = 24736.597998 eV Total energy + Delta-G solvation = -3906.141499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.48662 -39.38727 -38.25800 -36.85249 -36.59383 -34.27335 -33.17438 -31.72078 -29.75116 -28.94589 -27.95847 -25.50814 -24.93610 -23.88391 -22.52120 -21.80081 -21.72019 -21.25994 -20.05711 -19.53621 -18.80034 -17.24313 -16.66018 -16.23683 -16.11816 -15.90887 -15.44448 -15.13115 -14.53446 -14.45118 -14.27863 -13.96431 -13.75392 -13.47502 -13.37089 -13.19835 -12.91708 -12.82527 -12.76344 -12.54386 -12.14029 -11.87598 -11.82086 -11.76899 -11.56252 -11.37341 -11.27962 -10.95510 -10.76085 -10.70351 -10.45510 -10.29224 -10.14190 -10.07326 -9.86380 -9.73581 -9.20868 -9.17316 -9.09849 -8.57441 -8.43757 -7.80544 -6.00396 -4.09109 1.82648 2.66066 3.11587 3.32100 3.37591 3.39260 3.64995 3.72993 3.93556 4.10696 4.36373 4.38757 4.42519 4.60153 4.74870 4.79151 4.83750 4.89441 4.95762 4.99823 5.29401 5.34427 5.41451 5.43893 5.46879 5.49160 5.51194 5.61701 5.66701 5.67339 5.76571 5.81740 5.88598 5.90861 5.95661 6.13504 6.26054 6.38102 6.54539 6.61631 6.72566 6.86136 6.99583 7.04620 7.19219 7.27798 7.60126 7.83767 7.95561 7.99153 8.18052 8.36548 8.59894 8.94651 9.56293 11.04820 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022676 B = 0.002056 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.500320 B =13613.832068 C =14420.376298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.151 4.151 3 H 0.102 0.898 4 C -0.173 4.173 5 C -0.121 4.121 6 H 0.104 0.896 7 C -0.108 4.108 8 H 0.108 0.892 9 C -0.166 4.166 10 C -0.163 4.163 11 H 0.114 0.886 12 C 0.150 3.850 13 N -0.702 5.702 14 C 0.509 3.491 15 O -0.520 6.520 16 C 0.494 3.506 17 O -0.521 6.521 18 N -0.569 5.569 19 C 0.072 3.928 20 C -0.134 4.134 21 C -0.112 4.112 22 C 0.041 3.959 23 H 0.030 0.970 24 C -0.520 4.520 25 H 0.059 0.941 26 C 0.062 3.938 27 N -0.881 5.881 28 Si 0.894 3.106 29 H -0.277 1.277 30 H -0.287 1.287 31 H -0.277 1.277 32 C 0.108 3.892 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.414 0.586 43 H 0.060 0.940 44 H 0.126 0.874 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.264 0.736 50 H 0.048 0.952 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.618 19.398 -11.847 24.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.169 4.169 3 H 0.120 0.880 4 C -0.210 4.210 5 C -0.139 4.139 6 H 0.122 0.878 7 C -0.127 4.127 8 H 0.127 0.873 9 C -0.203 4.203 10 C -0.181 4.181 11 H 0.132 0.868 12 C 0.027 3.973 13 N -0.356 5.356 14 C 0.292 3.708 15 O -0.397 6.397 16 C 0.275 3.725 17 O -0.398 6.398 18 N -0.302 5.302 19 C -0.050 4.050 20 C -0.172 4.172 21 C -0.150 4.150 22 C 0.022 3.978 23 H 0.048 0.952 24 C -0.559 4.559 25 H 0.077 0.923 26 C -0.141 4.141 27 N -0.519 5.519 28 Si 0.722 3.278 29 H -0.202 1.202 30 H -0.213 1.213 31 H -0.203 1.203 32 C -0.012 4.012 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.250 0.750 43 H 0.078 0.922 44 H 0.143 0.857 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.074 0.926 50 H 0.067 0.933 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.606 19.396 -11.958 24.728 hybrid contribution 1.108 -0.695 0.464 1.388 sum -8.498 18.700 -11.495 23.538 Atomic orbital electron populations 1.21346 0.92769 1.01806 1.01981 1.22360 0.95583 0.94279 1.04660 0.87951 1.23119 1.02623 1.01429 0.93860 1.21820 0.99935 0.98580 0.93595 0.87777 1.21779 0.99807 0.97321 0.93764 0.87349 1.23176 1.02613 1.00883 0.93628 1.22543 0.99778 0.89769 1.06053 0.86814 1.20943 0.92939 0.85599 0.97851 1.45803 1.23668 1.08016 1.58077 1.20752 0.86505 0.83333 0.80228 1.90471 1.23602 1.77546 1.48115 1.19812 0.87333 0.83630 0.81760 1.90775 1.20669 1.77160 1.51206 1.48431 1.11538 1.09381 1.60801 1.22679 0.81964 1.03220 0.97170 1.21963 0.98601 0.99168 0.97444 1.21654 0.97413 0.96077 0.99869 1.18962 0.90156 0.95915 0.92799 0.95193 1.21054 0.95215 0.94369 1.45231 0.92321 1.25068 0.98151 0.95656 0.95230 1.69878 1.14681 1.19698 1.47607 0.86631 0.79523 0.82486 0.79207 1.20248 1.21270 1.20266 1.22486 0.95155 0.87683 0.95851 0.91974 0.92388 0.92485 0.88824 0.88606 0.88315 0.88423 0.90735 0.90906 0.74966 0.92194 0.85735 0.92127 0.92438 0.93058 0.93172 0.92593 0.93341 0.85815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 9.04 37.15 0.34 -0.35 16 2 C -0.15 -0.93 6.41 -90.62 -0.58 -1.51 16 3 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.17 -1.12 9.90 -26.72 -0.26 -1.39 16 5 C -0.12 -0.82 5.85 -90.61 -0.53 -1.35 16 6 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 7 C -0.11 -0.76 4.90 -90.62 -0.44 -1.20 16 8 H 0.11 0.74 7.19 -51.93 -0.37 0.37 16 9 C -0.17 -1.18 9.90 -26.73 -0.26 -1.45 16 10 C -0.16 -1.31 5.57 -90.62 -0.50 -1.81 16 11 H 0.11 0.91 8.04 -51.93 -0.42 0.50 16 12 C 0.15 1.52 5.96 -4.04 -0.02 1.49 16 13 N -0.70 -9.13 5.55 -60.73 -0.34 -9.47 16 14 C 0.51 8.47 7.74 -11.58 -0.09 8.38 16 15 O -0.52 -8.96 13.19 5.50 0.07 -8.89 16 16 C 0.49 10.07 7.73 -11.59 -0.09 9.98 16 17 O -0.52 -12.02 15.93 5.49 0.09 -11.93 16 18 N -0.57 -12.02 2.97 -173.27 -0.51 -12.53 16 19 C 0.07 1.30 5.98 -3.71 -0.02 1.27 16 20 C -0.13 -2.36 6.08 -26.61 -0.16 -2.53 16 21 C -0.11 -2.32 5.11 -26.69 -0.14 -2.46 16 22 C 0.04 1.02 2.25 -91.65 -0.21 0.81 16 23 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 24 C -0.52 -14.12 8.56 -34.44 -0.29 -14.42 16 25 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 26 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 27 N -0.88 -25.48 11.40 55.43 0.63 -24.85 16 28 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 31 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 32 C 0.11 2.64 5.41 -3.71 -0.02 2.62 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.32 7.40 -51.93 -0.38 -0.06 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.63 8.05 -51.93 -0.42 0.21 16 38 H 0.10 0.68 8.03 -51.93 -0.42 0.27 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.74 7.87 -51.93 -0.41 0.33 16 42 H 0.41 5.14 7.89 -40.82 -0.32 4.81 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.13 2.18 4.32 -54.75 -0.24 1.94 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 50 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 51 H 0.12 3.46 5.13 -51.93 -0.27 3.19 16 LS Contribution 405.54 15.07 6.11 6.11 Total: -1.00 -30.45 405.54 -11.07 -41.52 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -8.70 Total: 6.14 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -3.39 Total: -2.29 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.22 Total: -46.85 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: 0.16 Total: -20.82 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.45 -11.07 -41.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331878330.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.685 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds