Wall clock time and date at job start Tue Mar 31 2020 17:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 115.55855 * 2 1 4 4 C 1.53005 * 117.51383 * 214.29755 * 2 1 3 5 5 C 1.53008 * 60.00128 * 252.52104 * 4 2 1 6 6 H 1.09000 * 117.51732 * 252.51781 * 5 4 2 7 7 C 1.52992 * 117.49607 * 107.48916 * 5 4 2 8 8 H 1.09004 * 115.55304 * 325.71175 * 7 5 4 9 9 C 1.53001 * 117.51931 * 180.02562 * 7 5 4 10 10 C 1.52994 * 60.00180 * 252.51905 * 9 7 5 11 11 H 1.09007 * 117.51597 * 107.48006 * 10 9 7 12 12 C 1.53004 * 117.50039 * 252.50535 * 10 9 7 13 13 N 1.46492 * 109.46950 * 243.62464 * 12 10 9 14 14 C 1.34784 * 119.99621 * 179.97438 * 13 12 10 15 15 O 1.21350 * 119.99817 * 0.02562 * 14 13 12 16 16 C 1.49449 * 120.00048 * 179.97438 * 14 13 12 17 17 O 1.21354 * 120.00129 * 353.23425 * 16 14 13 18 18 N 1.34776 * 120.00013 * 173.22788 * 16 14 13 19 19 C 1.46918 * 120.63291 * 351.36994 * 18 16 14 20 20 C 1.53198 * 108.77503 * 233.58285 * 19 18 16 21 21 C 1.53031 * 109.31038 * 305.36137 * 20 19 18 22 22 C 1.53043 * 109.52704 * 61.37474 * 21 20 19 23 23 H 1.08996 * 109.49894 * 58.57647 * 22 21 20 24 24 C 1.50705 * 109.49798 * 178.67319 * 22 21 20 25 25 H 1.08007 * 119.99761 * 0.02562 * 24 22 21 26 26 C 1.37878 * 119.99943 * 179.97438 * 24 22 21 27 27 N 1.31513 * 119.99840 * 359.97438 * 26 24 22 28 28 Si 1.86805 * 119.99714 * 180.02562 * 26 24 22 29 29 H 1.48493 * 109.46991 * 60.00063 * 28 26 24 30 30 H 1.48500 * 109.46724 * 179.97438 * 28 26 24 31 31 H 1.48500 * 109.46913 * 299.99766 * 28 26 24 32 32 C 1.46933 * 120.62734 * 171.33910 * 18 16 14 33 33 H 1.08999 * 109.47398 * 274.33185 * 1 2 3 34 34 H 1.09007 * 109.46757 * 34.32659 * 1 2 3 35 35 H 1.08997 * 109.47808 * 154.32493 * 1 2 3 36 36 H 1.08998 * 117.49724 * 145.03409 * 4 2 1 37 37 H 1.08996 * 117.50512 * 0.02562 * 4 2 1 38 38 H 1.09003 * 117.50100 * 145.02337 * 9 7 5 39 39 H 1.09004 * 117.49645 * 0.02562 * 9 7 5 40 40 H 1.09002 * 109.46596 * 123.62050 * 12 10 9 41 41 H 1.08997 * 109.46488 * 3.62451 * 12 10 9 42 42 H 0.96996 * 120.00752 * 359.97438 * 13 12 10 43 43 H 1.09000 * 109.59331 * 113.79583 * 19 18 16 44 44 H 1.09000 * 109.58423 * 353.36766 * 19 18 16 45 45 H 1.08997 * 109.49904 * 185.40621 * 20 19 18 46 46 H 1.09003 * 109.49438 * 65.31628 * 20 19 18 47 47 H 1.09005 * 109.45791 * 181.38574 * 21 20 19 48 48 H 1.08997 * 109.46732 * 301.35679 * 21 20 19 49 49 H 0.97006 * 119.99379 * 180.02562 * 27 26 24 50 50 H 1.08997 * 109.58864 * 246.20125 * 32 18 16 51 51 H 1.08997 * 109.58972 * 6.63439 * 32 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2368 -1.1210 -0.7647 5 6 2.2363 -1.1208 0.7654 6 1 3.1711 -0.8748 1.2692 7 6 1.3587 -2.1560 1.4717 8 1 0.4240 -2.4022 0.9678 9 6 1.3574 -2.1559 3.0017 10 6 2.0650 -3.2766 2.2374 11 1 3.1551 -3.2762 2.2380 12 6 1.4055 -4.6572 2.2371 13 7 2.2813 -5.6168 2.9141 14 6 1.9036 -6.9049 3.0350 15 8 0.8383 -7.2699 2.5826 16 6 2.7971 -7.8841 3.7251 17 8 3.9126 -7.5508 4.0676 18 7 2.3641 -9.1372 3.9673 19 6 0.9605 -9.5025 3.7329 20 6 0.3932 -10.1264 5.0120 21 6 1.2831 -11.2943 5.4432 22 6 2.6934 -10.7801 5.7410 23 1 2.6470 -10.0239 6.5247 24 6 3.5605 -11.9252 6.1969 25 1 3.1475 -12.9208 6.2669 26 6 4.8814 -11.7023 6.5236 27 7 5.3846 -10.4903 6.4369 28 14 5.9564 -13.1220 7.0879 29 1 6.0199 -14.1502 6.0184 30 1 7.3249 -12.6225 7.3757 31 1 5.3790 -13.7216 8.3176 32 6 3.2869 -10.1640 4.4702 33 1 -0.3634 0.0776 1.0247 34 1 -0.3633 0.8488 -0.5796 35 1 -0.3634 -0.9261 -0.4452 36 1 3.1720 -0.8752 -1.2677 37 1 1.6119 -1.8586 -1.2682 38 1 0.4220 -2.4020 3.5043 39 1 1.9817 -1.4179 3.5054 40 1 1.2386 -4.9798 1.2094 41 1 0.4511 -4.6040 2.7608 42 1 3.1329 -5.3252 3.2754 43 1 0.9018 -10.2236 2.9176 44 1 0.3887 -8.6107 3.4767 45 1 -0.6170 -10.4892 4.8227 46 1 0.3686 -9.3764 5.8026 47 1 0.8679 -11.7555 6.3393 48 1 1.3273 -12.0323 4.6422 49 1 6.3140 -10.3336 6.6664 50 1 3.4180 -10.9390 3.7150 51 1 4.2501 -9.7086 4.7004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331878330.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:51 Heat of formation + Delta-G solvation = -38.646272 kcal Electronic energy + Delta-G solvation = -28643.468554 eV Core-core repulsion = 24736.597998 eV Total energy + Delta-G solvation = -3906.870557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.92588 -40.16085 -39.56635 -38.51181 -37.35382 -35.53043 -34.91813 -33.44852 -31.58638 -29.46244 -28.96352 -27.28240 -26.62427 -24.48182 -23.93258 -23.47673 -22.31100 -22.07132 -21.44611 -20.39867 -20.09117 -18.82370 -18.20969 -17.91808 -17.19050 -16.87862 -16.67222 -16.44258 -16.27399 -15.66600 -15.51686 -15.20529 -14.81887 -14.70432 -14.59839 -14.44665 -14.21804 -13.92234 -13.90620 -13.58172 -13.46536 -13.28525 -13.00362 -12.84239 -12.53471 -12.46216 -12.34863 -12.28339 -12.16301 -12.07053 -11.81730 -11.75596 -11.63517 -11.34888 -11.14836 -10.97754 -10.66873 -10.54072 -10.41057 -10.14817 -10.05415 -9.54376 -8.10907 -6.27893 0.36365 1.33821 1.42642 1.44667 1.52034 2.14283 2.40745 2.45764 2.66893 3.16723 3.17807 3.32920 3.46102 3.80354 3.85228 4.04777 4.13175 4.17585 4.19053 4.24604 4.33377 4.35492 4.37393 4.50493 4.58883 4.62974 4.68911 4.71723 4.80846 4.83873 4.94035 4.95823 4.99110 5.01565 5.06071 5.13219 5.20879 5.23262 5.24338 5.24554 5.28883 5.36127 5.39962 5.48041 5.49883 5.57355 5.84583 5.94275 6.00744 6.30392 6.43574 6.73102 6.83902 6.99043 7.41810 8.92592 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022676 B = 0.002056 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.500320 B =13613.832068 C =14420.376298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.148 4.148 3 H 0.108 0.892 4 C -0.177 4.177 5 C -0.129 4.129 6 H 0.103 0.897 7 C -0.098 4.098 8 H 0.113 0.887 9 C -0.162 4.162 10 C -0.170 4.170 11 H 0.114 0.886 12 C 0.151 3.849 13 N -0.685 5.685 14 C 0.519 3.481 15 O -0.524 6.524 16 C 0.485 3.515 17 O -0.557 6.557 18 N -0.577 5.577 19 C 0.072 3.928 20 C -0.126 4.126 21 C -0.106 4.106 22 C 0.039 3.961 23 H -0.011 1.011 24 C -0.536 4.536 25 H 0.063 0.937 26 C 0.010 3.990 27 N -0.914 5.914 28 Si 0.959 3.041 29 H -0.268 1.268 30 H -0.288 1.288 31 H -0.269 1.269 32 C 0.121 3.879 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.417 0.583 43 H 0.073 0.927 44 H 0.138 0.862 45 H 0.101 0.899 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.057 0.943 49 H 0.261 0.739 50 H 0.045 0.955 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.279 19.784 -12.764 26.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.166 4.166 3 H 0.126 0.874 4 C -0.214 4.214 5 C -0.147 4.147 6 H 0.122 0.878 7 C -0.117 4.117 8 H 0.131 0.869 9 C -0.199 4.199 10 C -0.188 4.188 11 H 0.132 0.868 12 C 0.029 3.971 13 N -0.337 5.337 14 C 0.300 3.700 15 O -0.403 6.403 16 C 0.267 3.733 17 O -0.437 6.437 18 N -0.308 5.308 19 C -0.049 4.049 20 C -0.164 4.164 21 C -0.144 4.144 22 C 0.019 3.981 23 H 0.008 0.992 24 C -0.575 4.575 25 H 0.081 0.919 26 C -0.189 4.189 27 N -0.552 5.552 28 Si 0.785 3.215 29 H -0.193 1.193 30 H -0.213 1.213 31 H -0.194 1.194 32 C -0.001 4.001 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.254 0.746 43 H 0.091 0.909 44 H 0.155 0.845 45 H 0.119 0.881 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.063 0.937 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.303 19.806 -12.891 26.195 hybrid contribution 1.622 -0.737 0.733 1.926 sum -9.681 19.069 -12.158 24.600 Atomic orbital electron populations 1.21359 0.92328 1.02108 1.02132 1.22439 0.95960 0.94320 1.03879 0.87420 1.23166 1.02916 1.01680 0.93661 1.21849 1.00106 0.99012 0.93778 0.87843 1.21787 0.99639 0.96433 0.93811 0.86945 1.23241 1.02634 1.00206 0.93826 1.22445 0.99750 0.88949 1.07683 0.86834 1.21127 0.92671 0.85739 0.97546 1.45817 1.23988 1.07049 1.56890 1.19897 0.85829 0.83818 0.80461 1.90453 1.23389 1.77732 1.48702 1.20551 0.87500 0.84015 0.81204 1.90748 1.22453 1.77892 1.52575 1.48464 1.12432 1.09245 1.60709 1.22907 0.80019 1.04209 0.97765 1.21933 0.99916 0.97680 0.96859 1.21548 0.95117 0.97335 1.00385 1.18905 0.92926 0.94461 0.91777 0.99246 1.21458 0.95830 0.95119 1.45072 0.91911 1.25898 0.99634 0.98021 0.95384 1.70062 1.14705 1.21798 1.48643 0.85589 0.77464 0.79424 0.79061 1.19273 1.21348 1.19430 1.21956 0.94385 0.88117 0.95644 0.91941 0.91713 0.92545 0.88488 0.88697 0.87873 0.87946 0.90478 0.90347 0.74589 0.90874 0.84490 0.88084 0.93288 0.92713 0.92395 0.92972 0.93675 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.04 71.98 0.65 -0.51 16 2 C -0.15 -1.59 6.41 -10.79 -0.07 -1.66 16 3 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 4 C -0.18 -2.06 9.90 30.60 0.30 -1.76 16 5 C -0.13 -1.56 5.85 -10.79 -0.06 -1.62 16 6 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 7 C -0.10 -1.21 4.90 -10.80 -0.05 -1.26 16 8 H 0.11 1.31 7.19 -2.38 -0.02 1.30 16 9 C -0.16 -2.02 9.90 30.59 0.30 -1.72 16 10 C -0.17 -2.47 5.57 -10.79 -0.06 -2.53 16 11 H 0.11 1.69 8.04 -2.38 -0.02 1.67 16 12 C 0.15 2.80 5.96 86.38 0.51 3.32 16 13 N -0.69 -17.18 5.55 -464.41 -2.58 -19.75 16 14 C 0.52 16.85 7.74 87.27 0.68 17.53 16 15 O -0.52 -17.13 13.19 -3.25 -0.04 -17.17 16 16 C 0.48 20.12 7.73 87.27 0.67 20.80 16 17 O -0.56 -26.77 15.93 -3.26 -0.05 -26.82 16 18 N -0.58 -24.61 2.97 -820.47 -2.44 -27.05 16 19 C 0.07 2.47 5.98 86.37 0.52 2.99 16 20 C -0.13 -4.21 6.08 30.67 0.19 -4.02 16 21 C -0.11 -4.29 5.11 30.62 0.16 -4.13 16 22 C 0.04 1.98 2.25 -11.46 -0.03 1.95 16 23 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 24 C -0.54 -29.62 8.56 25.60 0.22 -29.40 16 25 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 26 C 0.01 0.57 5.30 84.65 0.45 1.02 16 27 N -0.91 -54.87 11.40 21.45 0.24 -54.63 16 28 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 29 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 30 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 31 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 32 C 0.12 6.09 5.41 86.36 0.47 6.56 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.06 0.54 7.40 -2.39 -0.02 0.52 16 36 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 1.11 8.05 -2.39 -0.02 1.09 16 38 H 0.10 1.21 8.03 -2.39 -0.02 1.19 16 39 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 41 H 0.08 1.42 7.87 -2.39 -0.02 1.40 16 42 H 0.42 10.17 7.89 -92.71 -0.73 9.44 16 43 H 0.07 2.34 8.14 -2.39 -0.02 2.33 16 44 H 0.14 4.49 4.32 -47.09 -0.20 4.28 16 45 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 46 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 48 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 49 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 50 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 51 H 0.09 5.03 5.13 -2.39 -0.01 5.02 16 Total: -1.00 -67.51 405.54 2.00 -65.50 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 0.00 Total: 28.30 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 4.85 Total: 5.55 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -4.77 Total: -101.43 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -0.09 Total: -44.00 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -67.51 2.00 -65.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331878330.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.857 kcal (2) G-P(sol) polarization free energy of solvation -67.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds