Wall clock time and date at job start Tue Mar 31 2020 17:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 115.55021 * 2 1 4 4 C 1.53004 * 117.49766 * 214.33134 * 2 1 3 5 5 C 1.53003 * 117.49724 * 145.67344 * 2 1 3 6 6 H 1.09006 * 117.49678 * 215.00207 * 5 2 1 7 7 C 1.52999 * 117.50051 * 359.97438 * 5 2 1 8 8 H 1.08997 * 115.54854 * 34.33392 * 7 5 2 9 9 C 1.52997 * 117.49824 * 248.62266 * 7 5 2 10 10 C 1.52996 * 60.00146 * 252.51376 * 9 7 5 11 11 H 1.09005 * 117.49854 * 252.51389 * 10 9 7 12 12 C 1.52997 * 117.50079 * 107.49215 * 10 9 7 13 13 N 1.46499 * 109.47356 * 116.38025 * 12 10 9 14 14 C 1.34776 * 120.00027 * 180.02562 * 13 12 10 15 15 O 1.21347 * 120.00259 * 0.02562 * 14 13 12 16 16 C 1.49454 * 119.99779 * 179.97438 * 14 13 12 17 17 O 1.21354 * 119.99759 * 6.34471 * 16 14 13 18 18 N 1.34776 * 120.00105 * 186.34583 * 16 14 13 19 19 C 1.46923 * 120.62630 * 7.03775 * 18 16 14 20 20 C 1.53200 * 108.77241 * 233.58379 * 19 18 16 21 21 C 1.53035 * 109.31680 * 305.36755 * 20 19 18 22 22 C 1.53043 * 109.53530 * 61.36186 * 21 20 19 23 23 H 1.09003 * 109.49785 * 58.62353 * 22 21 20 24 24 C 1.50702 * 109.49583 * 178.68369 * 22 21 20 25 25 H 1.08004 * 119.99889 * 2.48629 * 24 22 21 26 26 C 1.37875 * 120.00001 * 182.48690 * 24 22 21 27 27 N 1.31514 * 120.00222 * 354.23801 * 26 24 22 28 28 Si 1.86806 * 120.00143 * 174.23982 * 26 24 22 29 29 H 1.48493 * 109.46873 * 95.00403 * 28 26 24 30 30 H 1.48505 * 109.46965 * 215.00256 * 28 26 24 31 31 H 1.48500 * 109.46766 * 335.00175 * 28 26 24 32 32 C 1.46927 * 120.63179 * 186.75978 * 18 16 14 33 33 H 1.09004 * 109.47234 * 274.41357 * 1 2 3 34 34 H 1.09003 * 109.47533 * 34.41753 * 1 2 3 35 35 H 1.09000 * 109.47350 * 154.41724 * 1 2 3 36 36 H 1.08992 * 117.49976 * 359.97438 * 4 2 1 37 37 H 1.09007 * 117.49667 * 145.02025 * 4 2 1 38 38 H 1.09003 * 117.50193 * 0.02562 * 9 7 5 39 39 H 1.08998 * 117.49743 * 145.01929 * 9 7 5 40 40 H 1.08999 * 109.47059 * 236.37990 * 12 10 9 41 41 H 1.08999 * 109.47243 * 356.37929 * 12 10 9 42 42 H 0.97007 * 119.99591 * 0.02562 * 13 12 10 43 43 H 1.09000 * 109.58970 * 353.37378 * 19 18 16 44 44 H 1.08997 * 109.58956 * 113.80618 * 19 18 16 45 45 H 1.09004 * 109.49576 * 65.32169 * 20 19 18 46 46 H 1.09000 * 109.49404 * 185.41080 * 20 19 18 47 47 H 1.08993 * 109.46347 * 181.38140 * 21 20 19 48 48 H 1.08998 * 109.46099 * 301.34948 * 21 20 19 49 49 H 0.96998 * 120.00821 * 180.02562 * 27 26 24 50 50 H 1.09000 * 109.58404 * 246.19948 * 32 18 16 51 51 H 1.09004 * 109.58392 * 6.62588 * 32 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2364 -1.1208 -0.7654 5 6 2.2364 -1.1208 0.7653 6 1 3.1713 -0.8747 1.2689 7 6 1.3588 -2.1555 1.4726 8 1 0.4237 -2.4014 0.9693 9 6 1.3593 -2.1547 3.0025 10 6 2.0653 -3.2762 2.2379 11 1 1.5948 -4.2594 2.2385 12 6 3.5953 -3.2765 2.2374 13 7 4.0836 -4.4806 2.9140 14 6 5.4087 -4.6953 3.0347 15 8 6.1973 -3.8910 2.5834 16 6 5.9068 -5.9235 3.7254 17 8 5.1242 -6.7824 4.0753 18 7 7.2251 -6.0771 3.9597 19 6 8.1668 -4.9837 3.6832 20 6 9.2813 -5.5111 2.7739 21 6 9.9203 -6.7431 3.4188 22 6 8.8668 -7.8416 3.5786 23 1 8.4520 -8.0927 2.6024 24 6 9.5043 -9.0657 4.1840 25 1 10.5463 -9.0476 4.4674 26 6 8.7573 -10.2085 4.3760 27 7 7.4641 -10.1967 4.1374 28 14 9.5822 -11.7739 4.9750 29 1 9.4530 -11.8676 6.4513 30 1 8.9291 -12.9497 4.3453 31 1 11.0200 -11.7487 4.6044 32 6 7.7470 -7.3388 4.5023 33 1 -0.3634 0.0791 1.0246 34 1 -0.3634 0.8478 -0.5809 35 1 -0.3634 -0.9269 -0.4438 36 1 1.6112 -1.8582 -1.2686 37 1 3.1715 -0.8747 -1.2687 38 1 1.9845 -1.4168 3.5053 39 1 0.4243 -2.4001 3.5062 40 1 3.9583 -3.2647 1.2097 41 1 3.9589 -2.3926 2.7614 42 1 3.4532 -5.1234 3.2751 43 1 7.6435 -4.1680 3.1844 44 1 8.5971 -4.6266 4.6188 45 1 8.8621 -5.7836 1.8053 46 1 10.0373 -4.7376 2.6390 47 1 10.7299 -7.1058 2.7856 48 1 10.3174 -6.4757 4.3981 49 1 6.9384 -11.0005 4.2728 50 1 8.1436 -7.1697 5.5034 51 1 6.9465 -8.0775 4.5440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331878332.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:59 Heat of formation + Delta-G solvation = -34.464959 kcal Electronic energy + Delta-G solvation = -28913.187548 eV Core-core repulsion = 25006.498306 eV Total energy + Delta-G solvation = -3906.689241 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.95873 -40.24566 -39.55901 -38.52727 -37.25603 -35.54893 -34.92057 -33.44578 -31.56593 -29.32921 -29.06413 -27.28164 -26.60939 -24.60343 -23.95821 -23.47404 -22.63139 -21.91648 -21.46882 -20.50471 -19.64841 -18.77360 -18.20637 -17.91871 -17.33825 -16.92991 -16.58967 -16.43391 -16.31730 -15.72506 -15.52988 -15.29580 -14.84399 -14.71726 -14.63201 -14.45409 -14.20913 -13.92513 -13.75877 -13.74305 -13.43939 -13.28120 -13.03254 -12.90482 -12.47687 -12.42545 -12.32553 -12.31368 -12.17209 -12.06246 -11.79126 -11.72126 -11.60811 -11.33456 -11.10970 -11.00233 -10.67530 -10.59471 -10.32009 -10.18350 -9.96692 -9.54523 -8.12772 -6.29086 0.34720 1.34008 1.41444 1.42881 1.53645 2.14781 2.40535 2.47264 2.64988 3.14999 3.19068 3.32085 3.48236 3.75196 3.90373 3.96765 4.15093 4.18831 4.22769 4.30324 4.32755 4.35706 4.36762 4.51873 4.57816 4.63580 4.71304 4.72351 4.80353 4.81531 4.93947 4.98243 4.99666 5.02514 5.05288 5.14636 5.20715 5.23406 5.25089 5.25611 5.29441 5.39099 5.40655 5.48877 5.54153 5.56673 5.83146 5.93245 6.00276 6.29421 6.44915 6.74226 6.83197 6.98369 7.40642 8.91044 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.023231 B = 0.002163 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.997927 B =12944.374070 C =13600.652964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.147 4.147 3 H 0.106 0.894 4 C -0.178 4.178 5 C -0.133 4.133 6 H 0.101 0.899 7 C -0.098 4.098 8 H 0.117 0.883 9 C -0.160 4.160 10 C -0.173 4.173 11 H 0.119 0.881 12 C 0.153 3.847 13 N -0.683 5.683 14 C 0.520 3.480 15 O -0.521 6.521 16 C 0.485 3.515 17 O -0.559 6.559 18 N -0.575 5.575 19 C 0.049 3.951 20 C -0.120 4.120 21 C -0.107 4.107 22 C 0.039 3.961 23 H -0.011 1.011 24 C -0.535 4.535 25 H 0.063 0.937 26 C 0.010 3.990 27 N -0.915 5.915 28 Si 0.960 3.040 29 H -0.275 1.275 30 H -0.285 1.285 31 H -0.264 1.264 32 C 0.121 3.879 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.418 0.582 43 H 0.156 0.844 44 H 0.071 0.929 45 H 0.045 0.955 46 H 0.098 0.902 47 H 0.053 0.947 48 H 0.057 0.943 49 H 0.262 0.738 50 H 0.044 0.956 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.256 21.734 -6.031 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.165 4.165 3 H 0.124 0.876 4 C -0.215 4.215 5 C -0.152 4.152 6 H 0.119 0.881 7 C -0.117 4.117 8 H 0.135 0.865 9 C -0.197 4.197 10 C -0.191 4.191 11 H 0.137 0.863 12 C 0.031 3.969 13 N -0.335 5.335 14 C 0.301 3.699 15 O -0.400 6.400 16 C 0.268 3.732 17 O -0.439 6.439 18 N -0.306 5.306 19 C -0.072 4.072 20 C -0.158 4.158 21 C -0.144 4.144 22 C 0.019 3.981 23 H 0.007 0.993 24 C -0.574 4.574 25 H 0.081 0.919 26 C -0.189 4.189 27 N -0.553 5.553 28 Si 0.786 3.214 29 H -0.201 1.201 30 H -0.211 1.211 31 H -0.188 1.188 32 C 0.000 4.000 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.128 0.872 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.255 0.745 43 H 0.172 0.828 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.116 0.884 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.062 0.938 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.268 21.757 -6.168 26.219 hybrid contribution 0.206 -1.773 0.519 1.859 sum -13.062 19.983 -5.649 24.533 Atomic orbital electron populations 1.21351 0.92124 1.02111 1.02172 1.22433 0.96055 0.94240 1.03747 0.87581 1.23169 1.02873 1.01802 0.93632 1.21873 1.00160 0.99292 0.93827 0.88114 1.21807 0.99512 0.96429 0.93904 0.86534 1.23232 1.02838 0.99883 0.93736 1.22466 0.92302 0.96484 1.07890 0.86345 1.21103 0.92705 0.85807 0.97309 1.45837 1.05517 1.25424 1.56767 1.19948 0.84043 0.85591 0.80303 1.90268 1.53415 1.46979 1.49329 1.20481 0.83657 0.87825 0.81259 1.90726 1.55531 1.44817 1.52795 1.48492 1.05854 1.16531 1.59748 1.23330 0.91968 0.90941 1.00914 1.21825 0.97918 0.98076 0.98019 1.21560 0.97844 0.94989 1.00034 1.19004 0.92174 0.93299 0.93581 0.99251 1.21484 0.96865 0.97112 1.41922 0.91902 1.25904 0.95274 1.02323 0.95432 1.70053 1.06550 1.29300 1.49404 0.85506 0.78887 0.78769 0.78280 1.20103 1.21125 1.18813 1.22087 0.99269 0.82882 0.95788 0.91819 0.91764 0.92462 0.88544 0.88794 0.88341 0.87246 0.90864 0.90486 0.74481 0.82783 0.91107 0.93576 0.88369 0.92775 0.92434 0.92923 0.93797 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.05 71.98 0.65 -0.47 16 2 C -0.15 -1.67 6.40 -10.79 -0.07 -1.74 16 3 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.18 -2.27 9.90 30.62 0.30 -1.97 16 5 C -0.13 -1.73 5.10 -10.77 -0.05 -1.78 16 6 H 0.10 1.42 7.35 -2.38 -0.02 1.40 16 7 C -0.10 -1.18 5.18 -10.79 -0.06 -1.24 16 8 H 0.12 1.25 7.19 -2.39 -0.02 1.23 16 9 C -0.16 -1.87 9.90 30.59 0.30 -1.57 16 10 C -0.17 -2.47 5.85 -10.80 -0.06 -2.54 16 11 H 0.12 1.63 8.04 -2.38 -0.02 1.61 16 12 C 0.15 2.92 4.76 86.38 0.41 3.33 16 13 N -0.68 -17.21 5.55 -464.42 -2.58 -19.78 16 14 C 0.52 17.07 7.78 87.27 0.68 17.75 16 15 O -0.52 -17.30 13.10 -3.24 -0.04 -17.34 16 16 C 0.49 20.24 7.74 87.27 0.68 20.91 16 17 O -0.56 -26.65 15.94 -3.26 -0.05 -26.70 16 18 N -0.57 -24.72 2.97 -819.63 -2.43 -27.15 16 19 C 0.05 1.70 6.27 86.37 0.54 2.24 16 20 C -0.12 -4.16 6.08 30.67 0.19 -3.97 16 21 C -0.11 -4.38 5.10 30.62 0.16 -4.22 16 22 C 0.04 2.00 2.26 -11.32 -0.03 1.97 16 23 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 24 C -0.54 -29.72 8.52 25.60 0.22 -29.50 16 25 H 0.06 3.36 7.75 -2.91 -0.02 3.34 16 26 C 0.01 0.57 5.36 84.65 0.45 1.03 16 27 N -0.91 -54.96 11.39 21.45 0.24 -54.71 16 28 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 29 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 30 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 31 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 32 C 0.12 6.18 5.43 86.51 0.47 6.65 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.06 0.52 7.40 -2.39 -0.02 0.50 16 36 H 0.10 1.19 8.05 -2.39 -0.02 1.17 16 37 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.10 1.17 8.03 -2.39 -0.02 1.15 16 39 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.51 8.02 -2.39 -0.02 1.49 16 41 H 0.08 1.44 7.62 -2.39 -0.02 1.42 16 42 H 0.42 10.03 7.89 -92.70 -0.73 9.29 16 43 H 0.16 5.14 3.78 -79.11 -0.30 4.84 16 44 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 46 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 47 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 49 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 50 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 51 H 0.08 5.03 5.19 -2.38 -0.01 5.02 16 Total: -1.00 -67.71 402.80 1.85 -65.86 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: -0.10 Total: 28.77 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 4.78 Total: 4.88 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -4.76 Total: -101.65 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.09 Total: -44.05 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -67.71 1.85 -65.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331878332.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.395 kcal (2) G-P(sol) polarization free energy of solvation -67.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds