Wall clock time and date at job start Tue Mar 31 2020 19:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46692 * 2 1 4 4 C 1.50700 * 109.46969 * 120.00220 * 2 1 3 5 5 C 1.38239 * 119.99685 * 252.24179 * 4 2 1 6 6 C 1.38235 * 119.99502 * 179.97438 * 5 4 2 7 7 C 1.38230 * 120.00102 * 359.97438 * 6 5 4 8 8 C 1.38232 * 120.00333 * 359.97438 * 7 6 5 9 9 C 1.38233 * 120.00024 * 359.97438 * 8 7 6 10 10 N 1.46896 * 109.47020 * 240.00474 * 2 1 3 11 11 C 1.46904 * 110.99849 * 168.38503 * 10 2 1 12 12 C 1.53005 * 109.47062 * 78.35002 * 11 10 2 13 13 O 1.42903 * 109.46832 * 62.24515 * 12 11 10 14 14 C 1.46901 * 111.00423 * 44.43154 * 10 2 1 15 15 C 1.52995 * 109.47168 * 189.99533 * 14 10 2 16 16 C 1.50703 * 109.47185 * 179.97438 * 15 14 10 17 17 O 1.21283 * 119.99943 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00298 * 180.02562 * 16 15 14 19 19 C 1.46503 * 119.99670 * 0.02562 * 18 16 15 20 20 C 1.46498 * 120.00142 * 180.02562 * 18 16 15 21 21 C 1.50692 * 109.47064 * 90.00260 * 20 18 16 22 22 H 1.08000 * 120.00447 * 0.02562 * 21 20 18 23 23 C 1.37885 * 119.99895 * 180.02562 * 21 20 18 24 24 N 1.31512 * 119.99953 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00017 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47235 * 59.99440 * 25 23 21 27 27 H 1.48500 * 109.47075 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46998 * 299.99508 * 25 23 21 29 29 H 1.09001 * 109.47321 * 59.99811 * 1 2 3 30 30 H 1.09002 * 109.47039 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47377 * 299.99822 * 1 2 3 32 32 H 1.08003 * 120.00039 * 0.25861 * 5 4 2 33 33 H 1.08000 * 119.99566 * 179.97438 * 6 5 4 34 34 H 1.08002 * 119.99918 * 179.97438 * 7 6 5 35 35 H 1.07995 * 120.00295 * 179.97438 * 8 7 6 36 36 H 1.07999 * 120.00584 * 179.97438 * 9 8 7 37 37 H 1.08996 * 109.47358 * 198.34738 * 11 10 2 38 38 H 1.08999 * 109.47196 * 318.35228 * 11 10 2 39 39 H 1.08993 * 109.47314 * 182.24026 * 12 11 10 40 40 H 1.09000 * 109.47322 * 302.24990 * 12 11 10 41 41 H 0.96700 * 113.99916 * 180.02562 * 13 12 11 42 42 H 1.08993 * 109.47009 * 310.00213 * 14 10 2 43 43 H 1.09009 * 109.46737 * 69.99934 * 14 10 2 44 44 H 1.08993 * 109.47710 * 300.00250 * 15 14 10 45 45 H 1.09009 * 109.46964 * 60.00540 * 15 14 10 46 46 H 1.08995 * 109.47107 * 90.00086 * 19 18 16 47 47 H 1.08997 * 109.46792 * 209.99547 * 19 18 16 48 48 H 1.08994 * 109.47053 * 329.99338 * 19 18 16 49 49 H 1.09004 * 109.47022 * 210.00638 * 20 18 16 50 50 H 1.09006 * 109.46964 * 330.00116 * 20 18 16 51 51 H 0.96999 * 120.00161 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.6069 0.0120 2.2595 6 6 3.0672 -0.6397 3.3883 7 6 2.9524 -2.0136 3.4884 8 6 2.3768 -2.7359 2.4599 9 6 1.9155 -2.0842 1.3315 10 7 2.0196 -0.6924 -1.1995 11 6 3.4617 -0.4775 -1.3795 12 6 4.2363 -1.3906 -0.4270 13 8 3.9590 -2.7559 -0.7454 14 6 1.2719 -0.2723 -2.3921 15 6 1.6318 -1.1837 -3.5670 16 6 0.8642 -0.7531 -4.7903 17 8 0.1044 0.1902 -4.7286 18 7 1.0220 -1.4162 -5.9530 19 6 1.9394 -2.5560 -6.0275 20 6 0.2762 -0.9973 -7.1423 21 6 1.0806 0.0228 -7.9061 22 1 2.0505 0.3282 -7.5424 23 6 0.5782 0.5662 -9.0695 24 7 -0.6027 0.1940 -9.5128 25 14 1.5756 1.8301 -10.0167 26 1 2.8697 1.2306 -10.4303 27 1 0.8195 2.2549 -11.2222 28 1 1.8306 3.0093 -9.1509 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.6921 1.0859 2.1834 33 1 3.5165 -0.0754 4.1921 34 1 3.3123 -2.5227 4.3702 35 1 2.2874 -3.8093 2.5379 36 1 1.4662 -2.6484 0.5276 37 1 3.7377 -0.7080 -2.4085 38 1 3.7039 0.5629 -1.1627 39 1 5.3047 -1.2029 -0.5322 40 1 3.9309 -1.1877 0.5995 41 1 4.4173 -3.3925 -0.1799 42 1 0.2024 -0.3410 -2.1932 43 1 1.5301 0.7577 -2.6387 44 1 2.7013 -1.1149 -3.7659 45 1 1.3735 -2.2136 -3.3204 46 1 1.4002 -3.4726 -5.7884 47 1 2.3488 -2.6276 -7.0351 48 1 2.7517 -2.4158 -5.3144 49 1 0.0897 -1.8630 -7.7779 50 1 -0.6741 -0.5577 -6.8391 51 1 -0.9560 0.5761 -10.3314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001459791217.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:02 Heat of formation + Delta-G solvation = -42.177885 kcal Electronic energy + Delta-G solvation = -29641.114075 eV Core-core repulsion = 25734.090376 eV Total energy + Delta-G solvation = -3907.023699 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.27779 -38.98249 -37.73885 -36.31417 -34.74219 -33.07754 -32.52623 -31.05466 -30.98208 -29.89939 -27.96230 -27.15317 -25.70536 -24.41165 -23.09231 -22.80017 -22.31054 -21.24819 -19.82862 -18.32055 -17.50078 -16.96596 -16.62131 -16.45833 -16.00834 -15.62468 -15.39574 -15.12224 -15.04376 -14.48422 -14.28954 -14.00618 -13.68671 -13.58521 -13.36799 -13.23284 -13.04546 -12.87879 -12.37151 -12.27696 -12.16217 -12.03689 -11.87119 -11.75028 -11.55581 -11.43272 -11.13664 -11.11255 -11.06262 -10.88672 -10.75068 -10.51838 -10.45235 -10.13070 -10.00799 -9.60772 -9.06773 -8.82079 -8.69650 -8.40750 -8.32814 -7.57504 -6.01483 -4.06119 1.15691 1.26906 3.32976 3.37150 3.39448 3.51162 3.53482 3.74016 4.16346 4.26515 4.47658 4.53344 4.71081 4.82077 4.93881 4.98419 5.04530 5.11180 5.19128 5.28925 5.29789 5.32983 5.35456 5.41530 5.45386 5.49655 5.52056 5.65193 5.67999 5.73828 5.78651 5.88336 5.93074 5.99621 6.00642 6.09409 6.19515 6.24423 6.29303 6.29870 6.38787 6.50656 6.83817 7.04033 7.07865 7.12788 7.48826 7.60037 7.63523 7.95190 8.27279 8.49432 8.93571 9.16669 9.58725 11.06523 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022441 B = 0.002400 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.418580 B =11664.469701 C =11867.691696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.118 3.882 3 H 0.048 0.952 4 C -0.068 4.068 5 C -0.124 4.124 6 C -0.127 4.127 7 C -0.127 4.127 8 C -0.129 4.129 9 C -0.075 4.075 10 N -0.520 5.520 11 C 0.050 3.950 12 C 0.071 3.929 13 O -0.551 6.551 14 C 0.065 3.935 15 C -0.132 4.132 16 C 0.504 3.496 17 O -0.548 6.548 18 N -0.604 5.604 19 C 0.085 3.915 20 C 0.245 3.755 21 C -0.525 4.525 22 H 0.055 0.945 23 C 0.060 3.940 24 N -0.895 5.895 25 Si 0.898 3.102 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.277 1.277 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.133 0.867 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.035 0.965 40 H 0.060 0.940 41 H 0.367 0.633 42 H 0.092 0.908 43 H 0.041 0.959 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.044 0.956 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.031 0.969 50 H 0.043 0.957 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.703 -6.259 26.023 28.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.010 3.990 3 H 0.066 0.934 4 C -0.068 4.068 5 C -0.142 4.142 6 C -0.145 4.145 7 C -0.145 4.145 8 C -0.147 4.147 9 C -0.093 4.093 10 N -0.245 5.245 11 C -0.078 4.078 12 C -0.007 4.007 13 O -0.354 6.354 14 C -0.062 4.062 15 C -0.172 4.172 16 C 0.291 3.709 17 O -0.426 6.426 18 N -0.336 5.336 19 C -0.060 4.060 20 C 0.126 3.874 21 C -0.564 4.564 22 H 0.074 0.926 23 C -0.142 4.142 24 N -0.534 5.534 25 Si 0.726 3.274 26 H -0.203 1.203 27 H -0.212 1.212 28 H -0.202 1.202 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.151 0.849 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.212 0.788 42 H 0.110 0.890 43 H 0.059 0.941 44 H 0.102 0.898 45 H 0.112 0.888 46 H 0.063 0.937 47 H 0.090 0.910 48 H 0.076 0.924 49 H 0.049 0.951 50 H 0.061 0.939 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.693 -5.946 25.456 27.549 hybrid contribution 1.275 1.287 -0.314 1.839 sum 9.968 -4.658 25.142 27.444 Atomic orbital electron populations 1.22040 0.93252 1.03180 1.02388 1.20598 0.95789 0.94439 0.88168 0.93398 1.19761 0.97887 0.94306 0.94872 1.21048 0.99488 0.99663 0.94040 1.21035 1.00872 0.94691 0.97883 1.21120 1.00192 0.94273 0.98890 1.21191 0.99531 0.99859 0.94117 1.21077 0.97467 0.93792 0.96942 1.61947 1.02708 1.57505 1.02292 1.22243 0.88144 0.96584 1.00852 1.22455 0.96362 0.82798 0.99078 1.86595 1.72949 1.15199 1.60666 1.21971 0.99542 0.96781 0.87913 1.21632 1.00805 1.01666 0.93106 1.20356 0.83157 0.83100 0.84334 1.90654 1.38753 1.28231 1.84973 1.48154 1.43383 1.30623 1.11402 1.21624 0.92971 0.88584 1.02774 1.19264 0.92460 0.95258 0.80448 1.21397 1.03881 1.23707 1.07404 0.92630 1.24941 0.95087 0.96794 0.97343 1.69922 1.17137 1.43634 1.22738 0.86564 0.79927 0.81825 0.79124 1.20274 1.21167 1.20234 0.91051 0.91388 0.92182 0.86517 0.86495 0.86605 0.86325 0.84925 0.89791 0.93452 0.94673 0.92203 0.78826 0.88953 0.94059 0.89770 0.88760 0.93743 0.90977 0.92361 0.95093 0.93889 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.31 37.16 0.31 -1.27 16 2 C 0.12 1.24 2.33 -68.87 -0.16 1.08 16 3 H 0.05 0.50 7.59 -51.93 -0.39 0.11 16 4 C -0.07 -0.65 2.60 -104.62 -0.27 -0.92 16 5 C -0.12 -1.07 9.03 -39.58 -0.36 -1.43 16 6 C -0.13 -0.99 10.05 -39.59 -0.40 -1.38 16 7 C -0.13 -0.96 10.05 -39.59 -0.40 -1.36 16 8 C -0.13 -1.04 10.05 -39.59 -0.40 -1.44 16 9 C -0.07 -0.70 6.88 -39.58 -0.27 -0.98 16 10 N -0.52 -6.11 3.84 -228.04 -0.88 -6.98 16 11 C 0.05 0.55 5.25 -3.82 -0.02 0.53 16 12 C 0.07 0.68 6.42 37.16 0.24 0.92 16 13 O -0.55 -5.47 12.78 -35.23 -0.45 -5.92 16 14 C 0.07 0.94 3.71 -3.83 -0.01 0.92 16 15 C -0.13 -2.04 4.23 -27.88 -0.12 -2.16 16 16 C 0.50 10.67 7.67 -10.98 -0.08 10.59 16 17 O -0.55 -13.88 15.56 5.56 0.09 -13.79 16 18 N -0.60 -13.20 2.86 -182.96 -0.52 -13.72 16 19 C 0.08 1.40 10.24 59.85 0.61 2.02 16 20 C 0.25 6.58 5.16 -5.20 -0.03 6.55 16 21 C -0.52 -15.18 9.39 -34.44 -0.32 -15.51 16 22 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 24 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 25 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.07 0.82 6.13 -51.93 -0.32 0.50 16 30 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.12 0.88 7.98 -52.48 -0.42 0.47 16 33 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.13 1.41 7.96 -52.49 -0.42 0.99 16 37 H 0.08 1.01 5.85 -51.93 -0.30 0.70 16 38 H 0.05 0.50 7.74 -51.93 -0.40 0.10 16 39 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.06 0.57 4.01 -51.93 -0.21 0.36 16 41 H 0.37 2.31 9.12 45.56 0.42 2.73 16 42 H 0.09 1.39 5.51 -51.93 -0.29 1.10 16 43 H 0.04 0.65 8.08 -51.92 -0.42 0.23 16 44 H 0.08 1.22 5.50 -51.93 -0.29 0.93 16 45 H 0.09 1.36 8.11 -51.92 -0.42 0.94 16 46 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 48 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 49 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 50 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 51 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 402.32 15.07 6.06 6.06 Total: -1.00 -34.01 402.32 -9.28 -43.29 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.52 Total: 2.36 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -1.78 Total: -2.17 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.66 Total: -46.97 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.36 Total: -19.71 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.01 -9.28 -43.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459791217.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.116 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds