Wall clock time and date at job start Tue Mar 31 2020 19:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46692 * 2 1 4 4 C 1.50700 * 109.46969 * 120.00220 * 2 1 3 5 5 C 1.38239 * 119.99685 * 252.24179 * 4 2 1 6 6 C 1.38235 * 119.99502 * 179.97438 * 5 4 2 7 7 C 1.38230 * 120.00102 * 359.97438 * 6 5 4 8 8 C 1.38232 * 120.00333 * 359.97438 * 7 6 5 9 9 C 1.38233 * 120.00024 * 359.97438 * 8 7 6 10 10 N 1.46896 * 109.47020 * 240.00474 * 2 1 3 11 11 C 1.46904 * 110.99849 * 168.38503 * 10 2 1 12 12 C 1.53005 * 109.47062 * 78.35002 * 11 10 2 13 13 O 1.42903 * 109.46832 * 62.24515 * 12 11 10 14 14 C 1.46901 * 111.00423 * 44.43154 * 10 2 1 15 15 C 1.52995 * 109.47168 * 189.99533 * 14 10 2 16 16 C 1.50703 * 109.47185 * 179.97438 * 15 14 10 17 17 O 1.21283 * 119.99943 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00298 * 180.02562 * 16 15 14 19 19 C 1.46503 * 119.99670 * 0.02562 * 18 16 15 20 20 C 1.46498 * 120.00142 * 180.02562 * 18 16 15 21 21 C 1.50692 * 109.47064 * 90.00260 * 20 18 16 22 22 H 1.08000 * 120.00447 * 0.02562 * 21 20 18 23 23 C 1.37885 * 119.99895 * 180.02562 * 21 20 18 24 24 N 1.31512 * 119.99953 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00017 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47235 * 59.99440 * 25 23 21 27 27 H 1.48500 * 109.47075 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46998 * 299.99508 * 25 23 21 29 29 H 1.09001 * 109.47321 * 59.99811 * 1 2 3 30 30 H 1.09002 * 109.47039 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47377 * 299.99822 * 1 2 3 32 32 H 1.08003 * 120.00039 * 0.25861 * 5 4 2 33 33 H 1.08000 * 119.99566 * 179.97438 * 6 5 4 34 34 H 1.08002 * 119.99918 * 179.97438 * 7 6 5 35 35 H 1.07995 * 120.00295 * 179.97438 * 8 7 6 36 36 H 1.07999 * 120.00584 * 179.97438 * 9 8 7 37 37 H 1.08996 * 109.47358 * 198.34738 * 11 10 2 38 38 H 1.08999 * 109.47196 * 318.35228 * 11 10 2 39 39 H 1.08993 * 109.47314 * 182.24026 * 12 11 10 40 40 H 1.09000 * 109.47322 * 302.24990 * 12 11 10 41 41 H 0.96700 * 113.99916 * 180.02562 * 13 12 11 42 42 H 1.08993 * 109.47009 * 310.00213 * 14 10 2 43 43 H 1.09009 * 109.46737 * 69.99934 * 14 10 2 44 44 H 1.08993 * 109.47710 * 300.00250 * 15 14 10 45 45 H 1.09009 * 109.46964 * 60.00540 * 15 14 10 46 46 H 1.08995 * 109.47107 * 90.00086 * 19 18 16 47 47 H 1.08997 * 109.46792 * 209.99547 * 19 18 16 48 48 H 1.08994 * 109.47053 * 329.99338 * 19 18 16 49 49 H 1.09004 * 109.47022 * 210.00638 * 20 18 16 50 50 H 1.09006 * 109.46964 * 330.00116 * 20 18 16 51 51 H 0.96999 * 120.00161 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.6069 0.0120 2.2595 6 6 3.0672 -0.6397 3.3883 7 6 2.9524 -2.0136 3.4884 8 6 2.3768 -2.7359 2.4599 9 6 1.9155 -2.0842 1.3315 10 7 2.0196 -0.6924 -1.1995 11 6 3.4617 -0.4775 -1.3795 12 6 4.2363 -1.3906 -0.4270 13 8 3.9590 -2.7559 -0.7454 14 6 1.2719 -0.2723 -2.3921 15 6 1.6318 -1.1837 -3.5670 16 6 0.8642 -0.7531 -4.7903 17 8 0.1044 0.1902 -4.7286 18 7 1.0220 -1.4162 -5.9530 19 6 1.9394 -2.5560 -6.0275 20 6 0.2762 -0.9973 -7.1423 21 6 1.0806 0.0228 -7.9061 22 1 2.0505 0.3282 -7.5424 23 6 0.5782 0.5662 -9.0695 24 7 -0.6027 0.1940 -9.5128 25 14 1.5756 1.8301 -10.0167 26 1 2.8697 1.2306 -10.4303 27 1 0.8195 2.2549 -11.2222 28 1 1.8306 3.0093 -9.1509 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.6921 1.0859 2.1834 33 1 3.5165 -0.0754 4.1921 34 1 3.3123 -2.5227 4.3702 35 1 2.2874 -3.8093 2.5379 36 1 1.4662 -2.6484 0.5276 37 1 3.7377 -0.7080 -2.4085 38 1 3.7039 0.5629 -1.1627 39 1 5.3047 -1.2029 -0.5322 40 1 3.9309 -1.1877 0.5995 41 1 4.4173 -3.3925 -0.1799 42 1 0.2024 -0.3410 -2.1932 43 1 1.5301 0.7577 -2.6387 44 1 2.7013 -1.1149 -3.7659 45 1 1.3735 -2.2136 -3.3204 46 1 1.4002 -3.4726 -5.7884 47 1 2.3488 -2.6276 -7.0351 48 1 2.7517 -2.4158 -5.3144 49 1 0.0897 -1.8630 -7.7779 50 1 -0.6741 -0.5577 -6.8391 51 1 -0.9560 0.5761 -10.3314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459791217.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:00 Heat of formation + Delta-G solvation = -65.454181 kcal Electronic energy + Delta-G solvation = -29642.123411 eV Core-core repulsion = 25734.090376 eV Total energy + Delta-G solvation = -3908.033035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.14346 -40.50439 -38.62373 -37.09462 -36.56865 -34.77465 -33.92578 -32.05559 -31.65951 -30.84013 -29.65457 -28.24551 -27.27771 -25.75320 -24.41853 -23.54195 -23.38226 -22.20573 -20.71153 -19.92089 -18.70925 -18.28127 -17.96231 -17.62791 -17.15180 -16.94312 -16.54636 -16.34811 -16.27365 -15.95502 -15.39131 -14.95967 -14.76394 -14.53718 -14.24440 -14.12523 -14.04838 -13.98821 -13.86254 -13.61703 -13.48914 -13.44427 -13.25294 -12.97169 -12.80908 -12.69581 -12.63448 -12.44936 -12.34350 -12.20039 -11.84217 -11.80641 -11.73687 -11.66199 -11.42609 -10.71437 -10.65257 -10.57951 -9.68313 -9.41979 -9.37069 -9.28247 -8.23073 -6.38278 0.52736 0.64877 1.35151 1.39568 1.47041 1.84486 2.27306 2.41110 2.84573 3.05540 3.06384 3.53404 3.76101 3.85010 3.95779 4.03030 4.11619 4.21549 4.28417 4.34058 4.39451 4.40212 4.45477 4.49360 4.59918 4.65064 4.67537 4.72594 4.73038 4.80826 4.87937 4.88979 4.94505 4.96189 5.01346 5.05800 5.09973 5.20816 5.22451 5.25937 5.31776 5.55367 5.68176 5.76823 5.80574 5.84031 6.04624 6.05654 6.18160 6.24325 6.68514 6.79173 7.09146 7.27155 7.48526 8.83850 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022441 B = 0.002400 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.418580 B =11664.469701 C =11867.691696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.118 3.882 3 H 0.047 0.953 4 C -0.075 4.075 5 C -0.131 4.131 6 C -0.129 4.129 7 C -0.126 4.126 8 C -0.130 4.130 9 C -0.082 4.082 10 N -0.514 5.514 11 C 0.044 3.956 12 C 0.078 3.922 13 O -0.566 6.566 14 C 0.074 3.926 15 C -0.110 4.110 16 C 0.495 3.505 17 O -0.599 6.599 18 N -0.612 5.612 19 C 0.081 3.919 20 C 0.259 3.741 21 C -0.543 4.543 22 H 0.052 0.948 23 C 0.006 3.994 24 N -0.929 5.929 25 Si 0.969 3.031 26 H -0.260 1.260 27 H -0.277 1.277 28 H -0.278 1.278 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.124 0.876 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.383 0.617 42 H 0.081 0.919 43 H 0.020 0.980 44 H 0.103 0.897 45 H 0.114 0.886 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.090 0.910 49 H 0.023 0.977 50 H -0.003 1.003 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.267 -6.970 27.838 31.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.010 3.990 3 H 0.065 0.935 4 C -0.076 4.076 5 C -0.149 4.149 6 C -0.146 4.146 7 C -0.144 4.144 8 C -0.148 4.148 9 C -0.101 4.101 10 N -0.238 5.238 11 C -0.084 4.084 12 C 0.000 4.000 13 O -0.372 6.372 14 C -0.054 4.054 15 C -0.150 4.150 16 C 0.284 3.716 17 O -0.481 6.481 18 N -0.343 5.343 19 C -0.061 4.061 20 C 0.137 3.863 21 C -0.582 4.582 22 H 0.070 0.930 23 C -0.193 4.193 24 N -0.568 5.568 25 Si 0.793 3.207 26 H -0.184 1.184 27 H -0.202 1.202 28 H -0.203 1.203 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.142 0.858 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.136 0.864 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.230 0.770 42 H 0.099 0.901 43 H 0.039 0.961 44 H 0.121 0.879 45 H 0.132 0.868 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.109 0.891 49 H 0.041 0.959 50 H 0.015 0.985 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.300 -6.710 27.298 30.297 hybrid contribution 0.453 1.456 -0.798 1.721 sum 11.753 -5.254 26.500 29.461 Atomic orbital electron populations 1.21990 0.93577 1.02797 1.02104 1.20619 0.95594 0.94514 0.88231 0.93517 1.19622 0.98943 0.94411 0.94619 1.21187 0.99462 1.00146 0.94136 1.21304 1.00327 0.95073 0.97945 1.21407 0.99386 0.94321 0.99311 1.21365 0.99049 1.00700 0.93677 1.20974 0.98184 0.93658 0.97250 1.61973 1.03033 1.57372 1.01433 1.22344 0.87641 0.97455 1.00930 1.22359 0.96614 0.82477 0.98518 1.86543 1.73572 1.15587 1.61471 1.21776 0.99400 0.95440 0.88821 1.21510 1.00620 1.02506 0.90383 1.21354 0.82658 0.82100 0.85445 1.90622 1.41052 1.30590 1.85877 1.48203 1.43767 1.32103 1.10209 1.21898 0.93169 0.87517 1.03561 1.18749 0.91166 0.94375 0.81998 1.21661 1.03949 1.24518 1.08037 0.92971 1.25891 0.96212 0.98830 0.98356 1.70046 1.18686 1.44808 1.23273 0.85456 0.78940 0.78734 0.77610 1.18409 1.20214 1.20338 0.92742 0.91780 0.91002 0.85822 0.84606 0.84493 0.84896 0.86445 0.90625 0.93097 0.93421 0.91971 0.76987 0.90062 0.96134 0.87929 0.86821 0.91218 0.91570 0.89101 0.95919 0.98472 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.31 71.98 0.60 -2.54 16 2 C 0.12 2.45 2.33 44.17 0.10 2.55 16 3 H 0.05 0.97 7.59 -2.39 -0.02 0.96 16 4 C -0.08 -1.34 2.60 -19.86 -0.05 -1.39 16 5 C -0.13 -2.01 9.03 22.27 0.20 -1.81 16 6 C -0.13 -1.65 10.05 22.27 0.22 -1.42 16 7 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16 8 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 9 C -0.08 -1.43 6.88 22.27 0.15 -1.28 16 10 N -0.51 -11.77 3.84 -875.37 -3.36 -15.13 16 11 C 0.04 0.92 5.25 86.30 0.45 1.37 16 12 C 0.08 1.33 6.42 71.98 0.46 1.79 16 13 O -0.57 -9.91 12.78 -148.98 -1.90 -11.82 16 14 C 0.07 2.15 3.71 86.30 0.32 2.47 16 15 C -0.11 -3.34 4.23 29.85 0.13 -3.21 16 16 C 0.50 21.43 7.67 87.66 0.67 22.10 16 17 O -0.60 -31.94 15.56 -3.04 -0.05 -31.99 16 18 N -0.61 -27.12 2.86 -851.14 -2.43 -29.55 16 19 C 0.08 2.55 10.24 127.77 1.31 3.86 16 20 C 0.26 14.46 5.16 85.63 0.44 14.90 16 21 C -0.54 -32.14 9.39 25.60 0.24 -31.90 16 22 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 23 C 0.01 0.36 5.46 84.66 0.46 0.82 16 24 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 25 Si 0.97 45.65 29.54 68.60 2.03 47.68 16 26 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 28 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 29 H 0.05 1.33 6.13 -2.39 -0.01 1.31 16 30 H 0.06 1.39 8.03 -2.39 -0.02 1.37 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.12 1.66 7.98 -2.91 -0.02 1.64 16 33 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 34 H 0.14 1.07 8.06 -2.91 -0.02 1.04 16 35 H 0.13 1.40 8.06 -2.91 -0.02 1.37 16 36 H 0.12 2.40 7.96 -2.91 -0.02 2.38 16 37 H 0.08 1.69 5.85 -2.39 -0.01 1.68 16 38 H 0.05 1.02 7.74 -2.39 -0.02 1.00 16 39 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.06 1.05 4.01 -2.39 -0.01 1.04 16 41 H 0.38 3.85 9.12 -74.06 -0.68 3.18 16 42 H 0.08 2.55 5.51 -2.39 -0.01 2.54 16 43 H 0.02 0.67 8.08 -2.38 -0.02 0.65 16 44 H 0.10 2.77 5.50 -2.39 -0.01 2.76 16 45 H 0.11 3.06 8.11 -2.38 -0.02 3.04 16 46 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 48 H 0.09 2.28 6.44 -2.39 -0.02 2.27 16 49 H 0.02 1.28 8.07 -2.39 -0.02 1.27 16 50 H 0.00 -0.18 7.42 -2.38 -0.02 -0.20 16 51 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -76.15 402.32 0.97 -75.17 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.25 Total: 19.18 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 6.16 Total: 3.44 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -5.51 Total: -101.67 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -1.95 Total: -43.81 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -76.15 0.97 -75.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459791217.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.720 kcal (2) G-P(sol) polarization free energy of solvation -76.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds