Wall clock time and date at job start Tue Mar 31 2020 20:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47058 * 2 1 4 4 C 1.53004 * 109.47457 * 119.99990 * 2 1 3 5 5 C 1.50701 * 109.47121 * 295.00194 * 4 2 1 6 6 C 1.34515 * 125.78882 * 89.99867 * 5 4 2 7 7 C 1.41380 * 106.84031 * 180.02562 * 6 5 4 8 8 C 1.34518 * 106.84115 * 359.97438 * 7 6 5 9 9 O 1.34299 * 125.78698 * 269.69460 * 5 4 2 10 10 C 1.50703 * 109.47131 * 240.00085 * 2 1 3 11 11 O 1.21275 * 119.99932 * 334.65318 * 10 2 1 12 12 N 1.34777 * 120.00016 * 154.65191 * 10 2 1 13 13 C 1.46931 * 120.62860 * 5.01266 * 12 10 2 14 14 C 1.53622 * 108.54207 * 126.37020 * 13 12 10 15 15 C 1.53045 * 109.24157 * 54.85676 * 14 13 12 16 16 C 1.53002 * 109.44775 * 178.49981 * 15 14 13 17 17 C 1.53003 * 109.47208 * 295.05760 * 16 15 14 18 18 N 1.46493 * 109.47198 * 180.02562 * 17 16 15 19 19 C 1.36935 * 119.99649 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00514 * 359.97438 * 19 18 17 21 21 C 1.38820 * 119.99855 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99871 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00094 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47261 * 59.99871 * 23 21 19 25 25 H 1.48497 * 109.47131 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46877 * 300.00144 * 23 21 19 27 27 C 1.53038 * 109.53676 * 298.51191 * 15 14 13 28 28 C 1.46924 * 120.63298 * 185.29779 * 12 10 2 29 29 H 1.09001 * 109.46837 * 295.33774 * 1 2 3 30 30 H 1.08998 * 109.47293 * 55.34028 * 1 2 3 31 31 H 1.09002 * 109.47074 * 175.34438 * 1 2 3 32 32 H 1.08997 * 109.46764 * 55.00130 * 4 2 1 33 33 H 1.08996 * 109.47020 * 174.99932 * 4 2 1 34 34 H 1.07997 * 126.57601 * 359.96351 * 6 5 4 35 35 H 1.07994 * 126.58010 * 179.97438 * 7 6 5 36 36 H 1.07997 * 125.78967 * 180.02562 * 8 7 6 37 37 H 1.09000 * 109.58411 * 246.20132 * 13 12 10 38 38 H 1.08993 * 109.58806 * 6.62975 * 13 12 10 39 39 H 1.08999 * 109.63489 * 294.86603 * 14 13 12 40 40 H 1.08998 * 109.43277 * 174.72364 * 14 13 12 41 41 H 1.08997 * 109.46060 * 58.53255 * 15 14 13 42 42 H 1.08997 * 109.47253 * 55.05713 * 16 15 14 43 43 H 1.09006 * 109.46821 * 175.05974 * 16 15 14 44 44 H 1.09000 * 109.47146 * 300.00618 * 17 16 15 45 45 H 1.09001 * 109.46790 * 59.99954 * 17 16 15 46 46 H 0.96997 * 120.00020 * 359.97438 * 18 17 16 47 47 H 0.96997 * 119.99918 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.49856 * 301.40951 * 27 15 14 49 49 H 1.08996 * 109.52654 * 181.33516 * 27 15 14 50 50 H 1.08997 * 109.58652 * 353.36683 * 28 12 10 51 51 H 1.09002 * 109.59149 * 113.65381 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0570 2.4766 6 6 0.5010 -0.1010 3.1722 7 6 0.5392 0.8274 4.2378 8 6 1.7010 1.4968 4.1300 9 8 2.3671 1.0220 3.0647 10 6 2.0323 -0.7104 -1.2305 11 8 1.3396 -1.5438 -1.7748 12 7 3.2515 -0.4195 -1.7261 13 6 4.1462 0.5060 -1.0176 14 6 5.4976 -0.1913 -0.8003 15 6 6.0364 -0.6782 -2.1475 16 6 7.4002 -1.3405 -1.9415 17 6 8.4064 -0.2955 -1.4553 18 7 9.7123 -0.9295 -1.2586 19 6 10.7759 -0.1853 -0.8227 20 1 10.6522 0.8690 -0.6243 21 6 12.0133 -0.7862 -0.6358 22 7 12.1640 -2.0713 -0.8771 23 14 13.4645 0.2291 -0.0419 24 1 13.1474 0.8173 1.2842 25 1 14.6622 -0.6409 0.0755 26 1 13.7376 1.3181 -1.0140 27 6 5.0629 -1.6929 -2.7515 28 6 3.7086 -1.0170 -2.9881 29 1 -0.3633 0.4398 0.9288 30 1 -0.3634 0.5844 -0.8453 31 1 -0.3633 -1.0243 -0.0834 32 1 1.6055 -1.7198 1.2951 33 1 3.1264 -0.7994 1.2055 34 1 -0.2922 -0.8017 2.9572 35 1 -0.2189 0.9715 4.9934 36 1 2.0424 2.2799 4.7907 37 1 4.2883 1.4062 -1.6155 38 1 3.7104 0.7698 -0.0541 39 1 5.3674 -1.0422 -0.1316 40 1 6.2027 0.5136 -0.3599 41 1 6.1430 0.1698 -2.8239 42 1 7.3109 -2.1325 -1.1979 43 1 7.7442 -1.7648 -2.8848 44 1 8.4956 0.4965 -2.1988 45 1 8.0623 0.1288 -0.5120 46 1 9.8234 -1.8766 -1.4364 47 1 13.0285 -2.4912 -0.7462 48 1 4.9368 -2.5296 -2.0644 49 1 5.4582 -2.0572 -3.6997 50 1 2.9841 -1.7584 -3.3249 51 1 3.8134 -0.2387 -3.7441 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482005792.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:00 Heat of formation + Delta-G solvation = -29.327259 kcal Electronic energy + Delta-G solvation = -28990.781307 eV Core-core repulsion = 25084.314853 eV Total energy + Delta-G solvation = -3906.466454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.88287 -40.61265 -38.13546 -35.59569 -35.33409 -33.54824 -33.14860 -31.43581 -30.95652 -30.19301 -28.44957 -27.01417 -25.39648 -23.92789 -23.31856 -22.56270 -21.99898 -21.00795 -20.62324 -20.20422 -18.85774 -17.89958 -17.40767 -16.99203 -16.45617 -15.96825 -15.51614 -15.05196 -14.81988 -14.65629 -14.60101 -14.16799 -13.93352 -13.74455 -13.51943 -13.23459 -13.11573 -13.09703 -12.96408 -12.88456 -12.76057 -12.53888 -12.22399 -12.01696 -11.62140 -11.42551 -11.32184 -11.25979 -11.15007 -10.99669 -10.77061 -10.60966 -10.31999 -10.22221 -10.18589 -9.94345 -9.87144 -9.65842 -8.85151 -8.80761 -8.72598 -6.89962 -5.75144 -3.03639 1.41044 2.25836 2.41467 2.67632 2.84073 3.44384 3.48444 3.49814 4.08905 4.37533 4.50048 4.53704 4.58609 4.61974 4.73850 4.79575 4.81166 4.85763 4.91742 5.01131 5.14471 5.16499 5.24707 5.36472 5.38829 5.48505 5.53462 5.55671 5.59957 5.64216 5.66396 5.69301 5.73659 5.81695 5.82850 5.86850 5.92742 6.02379 6.05526 6.18117 6.20058 6.36298 6.38100 6.43563 6.46408 6.84824 6.88139 6.93216 7.19360 7.70007 7.95497 8.44196 9.54753 10.14286 10.48375 11.47891 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011686 B = 0.002429 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.364470 B =11522.859422 C =13478.548463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 H 0.096 0.904 4 C -0.032 4.032 5 C -0.007 4.007 6 C -0.206 4.206 7 C -0.216 4.216 8 C -0.040 4.040 9 O -0.173 6.173 10 C 0.521 3.479 11 O -0.541 6.541 12 N -0.608 5.608 13 C 0.101 3.899 14 C -0.132 4.132 15 C -0.082 4.082 16 C -0.121 4.121 17 C 0.153 3.847 18 N -0.735 5.735 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.128 4.128 28 C 0.111 3.889 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.202 0.798 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.015 0.985 45 H 0.019 0.981 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.066 0.934 49 H 0.076 0.924 50 H 0.090 0.910 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.056 6.100 4.312 28.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.128 4.128 3 H 0.114 0.886 4 C -0.070 4.070 5 C -0.057 4.057 6 C -0.225 4.225 7 C -0.235 4.235 8 C -0.108 4.108 9 O -0.069 6.069 10 C 0.309 3.691 11 O -0.418 6.418 12 N -0.341 5.341 13 C -0.021 4.021 14 C -0.170 4.170 15 C -0.101 4.101 16 C -0.159 4.159 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.167 4.167 28 C -0.011 4.011 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.219 0.781 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.033 0.967 45 H 0.037 0.963 46 H 0.216 0.784 47 H 0.065 0.935 48 H 0.085 0.915 49 H 0.094 0.906 50 H 0.108 0.892 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -27.031 5.879 3.960 27.945 hybrid contribution 0.869 0.324 0.532 1.069 sum -26.162 6.204 4.491 27.260 Atomic orbital electron populations 1.21753 0.92051 1.03524 1.02350 1.21329 0.98744 1.00643 0.92132 0.88567 1.20084 1.02909 0.97361 0.86606 1.22196 0.92314 0.93435 0.97756 1.21614 0.99400 1.03769 0.97682 1.21845 0.99716 0.99966 1.01955 1.24065 0.93451 1.02127 0.91135 1.84040 1.43992 1.43110 1.35767 1.20483 0.80857 0.82411 0.85383 1.90678 1.56450 1.33411 1.61263 1.48187 1.15488 1.46188 1.24271 1.22020 0.90715 0.92170 0.97222 1.22129 0.95348 1.01303 0.98171 1.21082 0.94667 0.98080 0.96282 1.21761 0.93479 0.99048 1.01584 1.20695 0.85991 0.93941 0.96830 1.42382 1.05015 1.09717 1.80763 1.19193 0.88624 0.92703 1.36547 0.91294 1.24752 0.97810 0.95973 1.02585 1.69650 1.23886 1.09429 1.55373 0.86263 0.82308 0.78985 0.78616 1.21270 1.21677 1.21280 1.21975 0.94168 0.98618 1.01896 1.21647 0.96524 0.98116 0.84862 0.91350 0.92272 0.91135 0.87972 0.89208 0.83442 0.83513 0.78108 0.91024 0.89628 0.91395 0.89615 0.90990 0.92044 0.91903 0.96676 0.96318 0.78359 0.93476 0.91479 0.90567 0.89156 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.65 37.16 0.32 -0.81 16 2 C -0.11 -0.91 1.84 -91.77 -0.17 -1.08 16 3 H 0.10 0.74 6.73 -51.93 -0.35 0.39 16 4 C -0.03 -0.26 4.91 -27.88 -0.14 -0.40 16 5 C -0.01 -0.06 6.06 -35.62 -0.22 -0.28 16 6 C -0.21 -1.70 9.29 -39.70 -0.37 -2.07 16 7 C -0.22 -1.64 10.91 -39.70 -0.43 -2.08 16 8 C -0.04 -0.30 12.09 29.42 0.36 0.05 16 9 O -0.17 -1.67 10.65 5.70 0.06 -1.61 16 10 C 0.52 5.77 6.80 -10.98 -0.07 5.69 16 11 O -0.54 -7.75 15.42 5.56 0.09 -7.67 16 12 N -0.61 -6.20 2.97 -172.51 -0.51 -6.71 16 13 C 0.10 0.90 5.95 -3.48 -0.02 0.88 16 14 C -0.13 -1.42 5.16 -26.38 -0.14 -1.55 16 15 C -0.08 -0.97 2.15 -90.58 -0.19 -1.16 16 16 C -0.12 -1.88 4.80 -26.73 -0.13 -2.01 16 17 C 0.15 3.01 6.01 -4.04 -0.02 2.99 16 18 N -0.73 -18.87 5.60 -59.91 -0.34 -19.21 16 19 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 22 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16 23 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 C -0.13 -1.37 5.36 -26.61 -0.14 -1.52 16 28 C 0.11 1.13 6.44 -3.71 -0.02 1.11 16 29 H 0.07 0.50 6.14 -51.93 -0.32 0.18 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.63 7.70 -51.93 -0.40 0.23 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.75 7.20 -51.93 -0.37 0.38 16 34 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.20 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.66 4.89 -51.93 -0.25 0.41 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.98 6.50 -51.93 -0.34 0.64 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.02 0.37 6.53 -51.93 -0.34 0.03 16 46 H 0.38 10.36 7.67 -40.82 -0.31 10.04 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.09 1.02 7.00 -51.93 -0.36 0.65 16 51 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 400.70 15.07 6.04 6.04 Total: -1.00 -33.77 400.70 -9.11 -42.89 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.51 Total: 6.36 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -1.64 Total: -9.71 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.12 Total: -53.80 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.15 Total: -9.28 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.77 -9.11 -42.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482005792.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.558 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds