Wall clock time and date at job start Tue Mar 31 2020 20:26:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09002 * 109.47058 * 2 1
4 4 C 1.53004 * 109.47457 * 119.99990 * 2 1 3
5 5 C 1.50701 * 109.47121 * 295.00194 * 4 2 1
6 6 C 1.34515 * 125.78882 * 89.99867 * 5 4 2
7 7 C 1.41380 * 106.84031 * 180.02562 * 6 5 4
8 8 C 1.34518 * 106.84115 * 359.97438 * 7 6 5
9 9 O 1.34299 * 125.78698 * 269.69460 * 5 4 2
10 10 C 1.50703 * 109.47131 * 240.00085 * 2 1 3
11 11 O 1.21275 * 119.99932 * 334.65318 * 10 2 1
12 12 N 1.34777 * 120.00016 * 154.65191 * 10 2 1
13 13 C 1.46931 * 120.62860 * 5.01266 * 12 10 2
14 14 C 1.53622 * 108.54207 * 126.37020 * 13 12 10
15 15 C 1.53045 * 109.24157 * 54.85676 * 14 13 12
16 16 C 1.53002 * 109.44775 * 178.49981 * 15 14 13
17 17 C 1.53003 * 109.47208 * 295.05760 * 16 15 14
18 18 N 1.46493 * 109.47198 * 180.02562 * 17 16 15
19 19 C 1.36935 * 119.99649 * 180.02562 * 18 17 16
20 20 H 1.07997 * 120.00514 * 359.97438 * 19 18 17
21 21 C 1.38820 * 119.99855 * 179.97438 * 19 18 17
22 22 N 1.31617 * 119.99871 * 359.97438 * 21 19 18
23 23 Si 1.86800 * 120.00094 * 179.97438 * 21 19 18
24 24 H 1.48496 * 109.47261 * 59.99871 * 23 21 19
25 25 H 1.48497 * 109.47131 * 180.02562 * 23 21 19
26 26 H 1.48504 * 109.46877 * 300.00144 * 23 21 19
27 27 C 1.53038 * 109.53676 * 298.51191 * 15 14 13
28 28 C 1.46924 * 120.63298 * 185.29779 * 12 10 2
29 29 H 1.09001 * 109.46837 * 295.33774 * 1 2 3
30 30 H 1.08998 * 109.47293 * 55.34028 * 1 2 3
31 31 H 1.09002 * 109.47074 * 175.34438 * 1 2 3
32 32 H 1.08997 * 109.46764 * 55.00130 * 4 2 1
33 33 H 1.08996 * 109.47020 * 174.99932 * 4 2 1
34 34 H 1.07997 * 126.57601 * 359.96351 * 6 5 4
35 35 H 1.07994 * 126.58010 * 179.97438 * 7 6 5
36 36 H 1.07997 * 125.78967 * 180.02562 * 8 7 6
37 37 H 1.09000 * 109.58411 * 246.20132 * 13 12 10
38 38 H 1.08993 * 109.58806 * 6.62975 * 13 12 10
39 39 H 1.08999 * 109.63489 * 294.86603 * 14 13 12
40 40 H 1.08998 * 109.43277 * 174.72364 * 14 13 12
41 41 H 1.08997 * 109.46060 * 58.53255 * 15 14 13
42 42 H 1.08997 * 109.47253 * 55.05713 * 16 15 14
43 43 H 1.09006 * 109.46821 * 175.05974 * 16 15 14
44 44 H 1.09000 * 109.47146 * 300.00618 * 17 16 15
45 45 H 1.09001 * 109.46790 * 59.99954 * 17 16 15
46 46 H 0.96997 * 120.00020 * 359.97438 * 18 17 16
47 47 H 0.96997 * 119.99918 * 180.02562 * 22 21 19
48 48 H 1.09002 * 109.49856 * 301.40951 * 27 15 14
49 49 H 1.08996 * 109.52654 * 181.33516 * 27 15 14
50 50 H 1.08997 * 109.58652 * 353.36683 * 28 12 10
51 51 H 1.09002 * 109.59149 * 113.65381 * 28 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7212 1.2492
5 6 1.6414 0.0570 2.4766
6 6 0.5010 -0.1010 3.1722
7 6 0.5392 0.8274 4.2378
8 6 1.7010 1.4968 4.1300
9 8 2.3671 1.0220 3.0647
10 6 2.0323 -0.7104 -1.2305
11 8 1.3396 -1.5438 -1.7748
12 7 3.2515 -0.4195 -1.7261
13 6 4.1462 0.5060 -1.0176
14 6 5.4976 -0.1913 -0.8003
15 6 6.0364 -0.6782 -2.1475
16 6 7.4002 -1.3405 -1.9415
17 6 8.4064 -0.2955 -1.4553
18 7 9.7123 -0.9295 -1.2586
19 6 10.7759 -0.1853 -0.8227
20 1 10.6522 0.8690 -0.6243
21 6 12.0133 -0.7862 -0.6358
22 7 12.1640 -2.0713 -0.8771
23 14 13.4645 0.2291 -0.0419
24 1 13.1474 0.8173 1.2842
25 1 14.6622 -0.6409 0.0755
26 1 13.7376 1.3181 -1.0140
27 6 5.0629 -1.6929 -2.7515
28 6 3.7086 -1.0170 -2.9881
29 1 -0.3633 0.4398 0.9288
30 1 -0.3634 0.5844 -0.8453
31 1 -0.3633 -1.0243 -0.0834
32 1 1.6055 -1.7198 1.2951
33 1 3.1264 -0.7994 1.2055
34 1 -0.2922 -0.8017 2.9572
35 1 -0.2189 0.9715 4.9934
36 1 2.0424 2.2799 4.7907
37 1 4.2883 1.4062 -1.6155
38 1 3.7104 0.7698 -0.0541
39 1 5.3674 -1.0422 -0.1316
40 1 6.2027 0.5136 -0.3599
41 1 6.1430 0.1698 -2.8239
42 1 7.3109 -2.1325 -1.1979
43 1 7.7442 -1.7648 -2.8848
44 1 8.4956 0.4965 -2.1988
45 1 8.0623 0.1288 -0.5120
46 1 9.8234 -1.8766 -1.4364
47 1 13.0285 -2.4912 -0.7462
48 1 4.9368 -2.5296 -2.0644
49 1 5.4582 -2.0572 -3.6997
50 1 2.9841 -1.7584 -3.3249
51 1 3.8134 -0.2387 -3.7441
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001482005792.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:26:00
Heat of formation + Delta-G solvation = -29.327259 kcal
Electronic energy + Delta-G solvation = -28990.781307 eV
Core-core repulsion = 25084.314853 eV
Total energy + Delta-G solvation = -3906.466454 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.88287 -40.61265 -38.13546 -35.59569 -35.33409 -33.54824 -33.14860 -31.43581
-30.95652 -30.19301 -28.44957 -27.01417 -25.39648 -23.92789 -23.31856 -22.56270
-21.99898 -21.00795 -20.62324 -20.20422 -18.85774 -17.89958 -17.40767 -16.99203
-16.45617 -15.96825 -15.51614 -15.05196 -14.81988 -14.65629 -14.60101 -14.16799
-13.93352 -13.74455 -13.51943 -13.23459 -13.11573 -13.09703 -12.96408 -12.88456
-12.76057 -12.53888 -12.22399 -12.01696 -11.62140 -11.42551 -11.32184 -11.25979
-11.15007 -10.99669 -10.77061 -10.60966 -10.31999 -10.22221 -10.18589 -9.94345
-9.87144 -9.65842 -8.85151 -8.80761 -8.72598 -6.89962 -5.75144 -3.03639
1.41044 2.25836 2.41467 2.67632 2.84073 3.44384 3.48444 3.49814
4.08905 4.37533 4.50048 4.53704 4.58609 4.61974 4.73850 4.79575
4.81166 4.85763 4.91742 5.01131 5.14471 5.16499 5.24707 5.36472
5.38829 5.48505 5.53462 5.55671 5.59957 5.64216 5.66396 5.69301
5.73659 5.81695 5.82850 5.86850 5.92742 6.02379 6.05526 6.18117
6.20058 6.36298 6.38100 6.43563 6.46408 6.84824 6.88139 6.93216
7.19360 7.70007 7.95497 8.44196 9.54753 10.14286 10.48375 11.47891
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.011686 B = 0.002429 C = 0.002077
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2395.364470 B =11522.859422 C =13478.548463
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.107 4.107
3 H 0.096 0.904
4 C -0.032 4.032
5 C -0.007 4.007
6 C -0.206 4.206
7 C -0.216 4.216
8 C -0.040 4.040
9 O -0.173 6.173
10 C 0.521 3.479
11 O -0.541 6.541
12 N -0.608 5.608
13 C 0.101 3.899
14 C -0.132 4.132
15 C -0.082 4.082
16 C -0.121 4.121
17 C 0.153 3.847
18 N -0.735 5.735
19 C -0.239 4.239
20 H 0.069 0.931
21 C -0.015 4.015
22 N -0.935 5.935
23 Si 0.907 3.093
24 H -0.286 1.286
25 H -0.291 1.291
26 H -0.286 1.286
27 C -0.128 4.128
28 C 0.111 3.889
29 H 0.068 0.932
30 H 0.058 0.942
31 H 0.070 0.930
32 H 0.102 0.898
33 H 0.089 0.911
34 H 0.148 0.852
35 H 0.147 0.853
36 H 0.202 0.798
37 H 0.071 0.929
38 H 0.085 0.915
39 H 0.067 0.933
40 H 0.085 0.915
41 H 0.072 0.928
42 H 0.061 0.939
43 H 0.062 0.938
44 H 0.015 0.985
45 H 0.019 0.981
46 H 0.383 0.617
47 H 0.255 0.745
48 H 0.066 0.934
49 H 0.076 0.924
50 H 0.090 0.910
51 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.056 6.100 4.312 28.069
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.128 4.128
3 H 0.114 0.886
4 C -0.070 4.070
5 C -0.057 4.057
6 C -0.225 4.225
7 C -0.235 4.235
8 C -0.108 4.108
9 O -0.069 6.069
10 C 0.309 3.691
11 O -0.418 6.418
12 N -0.341 5.341
13 C -0.021 4.021
14 C -0.170 4.170
15 C -0.101 4.101
16 C -0.159 4.159
17 C 0.025 3.975
18 N -0.379 5.379
19 C -0.371 4.371
20 H 0.087 0.913
21 C -0.211 4.211
22 N -0.583 5.583
23 Si 0.738 3.262
24 H -0.213 1.213
25 H -0.217 1.217
26 H -0.213 1.213
27 C -0.167 4.167
28 C -0.011 4.011
29 H 0.087 0.913
30 H 0.077 0.923
31 H 0.089 0.911
32 H 0.120 0.880
33 H 0.108 0.892
34 H 0.166 0.834
35 H 0.165 0.835
36 H 0.219 0.781
37 H 0.090 0.910
38 H 0.104 0.896
39 H 0.086 0.914
40 H 0.104 0.896
41 H 0.090 0.910
42 H 0.080 0.920
43 H 0.081 0.919
44 H 0.033 0.967
45 H 0.037 0.963
46 H 0.216 0.784
47 H 0.065 0.935
48 H 0.085 0.915
49 H 0.094 0.906
50 H 0.108 0.892
51 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -27.031 5.879 3.960 27.945
hybrid contribution 0.869 0.324 0.532 1.069
sum -26.162 6.204 4.491 27.260
Atomic orbital electron populations
1.21753 0.92051 1.03524 1.02350 1.21329 0.98744 1.00643 0.92132
0.88567 1.20084 1.02909 0.97361 0.86606 1.22196 0.92314 0.93435
0.97756 1.21614 0.99400 1.03769 0.97682 1.21845 0.99716 0.99966
1.01955 1.24065 0.93451 1.02127 0.91135 1.84040 1.43992 1.43110
1.35767 1.20483 0.80857 0.82411 0.85383 1.90678 1.56450 1.33411
1.61263 1.48187 1.15488 1.46188 1.24271 1.22020 0.90715 0.92170
0.97222 1.22129 0.95348 1.01303 0.98171 1.21082 0.94667 0.98080
0.96282 1.21761 0.93479 0.99048 1.01584 1.20695 0.85991 0.93941
0.96830 1.42382 1.05015 1.09717 1.80763 1.19193 0.88624 0.92703
1.36547 0.91294 1.24752 0.97810 0.95973 1.02585 1.69650 1.23886
1.09429 1.55373 0.86263 0.82308 0.78985 0.78616 1.21270 1.21677
1.21280 1.21975 0.94168 0.98618 1.01896 1.21647 0.96524 0.98116
0.84862 0.91350 0.92272 0.91135 0.87972 0.89208 0.83442 0.83513
0.78108 0.91024 0.89628 0.91395 0.89615 0.90990 0.92044 0.91903
0.96676 0.96318 0.78359 0.93476 0.91479 0.90567 0.89156 0.91492
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.14 8.65 37.16 0.32 -0.81 16
2 C -0.11 -0.91 1.84 -91.77 -0.17 -1.08 16
3 H 0.10 0.74 6.73 -51.93 -0.35 0.39 16
4 C -0.03 -0.26 4.91 -27.88 -0.14 -0.40 16
5 C -0.01 -0.06 6.06 -35.62 -0.22 -0.28 16
6 C -0.21 -1.70 9.29 -39.70 -0.37 -2.07 16
7 C -0.22 -1.64 10.91 -39.70 -0.43 -2.08 16
8 C -0.04 -0.30 12.09 29.42 0.36 0.05 16
9 O -0.17 -1.67 10.65 5.70 0.06 -1.61 16
10 C 0.52 5.77 6.80 -10.98 -0.07 5.69 16
11 O -0.54 -7.75 15.42 5.56 0.09 -7.67 16
12 N -0.61 -6.20 2.97 -172.51 -0.51 -6.71 16
13 C 0.10 0.90 5.95 -3.48 -0.02 0.88 16
14 C -0.13 -1.42 5.16 -26.38 -0.14 -1.55 16
15 C -0.08 -0.97 2.15 -90.58 -0.19 -1.16 16
16 C -0.12 -1.88 4.80 -26.73 -0.13 -2.01 16
17 C 0.15 3.01 6.01 -4.04 -0.02 2.99 16
18 N -0.73 -18.87 5.60 -59.91 -0.34 -19.21 16
19 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16
20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16
21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16
22 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16
23 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16
24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16
26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
27 C -0.13 -1.37 5.36 -26.61 -0.14 -1.52 16
28 C 0.11 1.13 6.44 -3.71 -0.02 1.11 16
29 H 0.07 0.50 6.14 -51.93 -0.32 0.18 16
30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
31 H 0.07 0.63 7.70 -51.93 -0.40 0.23 16
32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16
33 H 0.09 0.75 7.20 -51.93 -0.37 0.38 16
34 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16
35 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16
36 H 0.20 0.84 8.06 -52.49 -0.42 0.41 16
37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
38 H 0.09 0.66 4.89 -51.93 -0.25 0.41 16
39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
40 H 0.09 0.98 6.50 -51.93 -0.34 0.64 16
41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16
42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16
44 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16
45 H 0.02 0.37 6.53 -51.93 -0.34 0.03 16
46 H 0.38 10.36 7.67 -40.82 -0.31 10.04 16
47 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16
48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
49 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
50 H 0.09 1.02 7.00 -51.93 -0.36 0.65 16
51 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16
LS Contribution 400.70 15.07 6.04 6.04
Total: -1.00 -33.77 400.70 -9.11 -42.89
By element:
Atomic # 1 Polarization: 14.88 SS G_CDS: -8.51 Total: 6.36 kcal
Atomic # 6 Polarization: -8.08 SS G_CDS: -1.64 Total: -9.71 kcal
Atomic # 7 Polarization: -53.67 SS G_CDS: -0.12 Total: -53.80 kcal
Atomic # 8 Polarization: -9.42 SS G_CDS: 0.15 Total: -9.28 kcal
Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -33.77 -9.11 -42.89 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001482005792.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.558 kcal
(2) G-P(sol) polarization free energy of solvation -33.772 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.213 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.327 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds