Wall clock time and date at job start Tue Mar 31 2020 20:25:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09002 * 109.47058 * 2 1
4 4 C 1.53004 * 109.47457 * 119.99990 * 2 1 3
5 5 C 1.50701 * 109.47121 * 295.00194 * 4 2 1
6 6 C 1.34515 * 125.78882 * 89.99867 * 5 4 2
7 7 C 1.41380 * 106.84031 * 180.02562 * 6 5 4
8 8 C 1.34518 * 106.84115 * 359.97438 * 7 6 5
9 9 O 1.34299 * 125.78698 * 269.69460 * 5 4 2
10 10 C 1.50703 * 109.47131 * 240.00085 * 2 1 3
11 11 O 1.21275 * 119.99932 * 334.65318 * 10 2 1
12 12 N 1.34777 * 120.00016 * 154.65191 * 10 2 1
13 13 C 1.46931 * 120.62860 * 5.01266 * 12 10 2
14 14 C 1.53622 * 108.54207 * 126.37020 * 13 12 10
15 15 C 1.53045 * 109.24157 * 54.85676 * 14 13 12
16 16 C 1.53002 * 109.44775 * 178.49981 * 15 14 13
17 17 C 1.53003 * 109.47208 * 295.05760 * 16 15 14
18 18 N 1.46493 * 109.47198 * 180.02562 * 17 16 15
19 19 C 1.36935 * 119.99649 * 180.02562 * 18 17 16
20 20 H 1.07997 * 120.00514 * 359.97438 * 19 18 17
21 21 C 1.38820 * 119.99855 * 179.97438 * 19 18 17
22 22 N 1.31617 * 119.99871 * 359.97438 * 21 19 18
23 23 Si 1.86800 * 120.00094 * 179.97438 * 21 19 18
24 24 H 1.48496 * 109.47261 * 59.99871 * 23 21 19
25 25 H 1.48497 * 109.47131 * 180.02562 * 23 21 19
26 26 H 1.48504 * 109.46877 * 300.00144 * 23 21 19
27 27 C 1.53038 * 109.53676 * 298.51191 * 15 14 13
28 28 C 1.46924 * 120.63298 * 185.29779 * 12 10 2
29 29 H 1.09001 * 109.46837 * 295.33774 * 1 2 3
30 30 H 1.08998 * 109.47293 * 55.34028 * 1 2 3
31 31 H 1.09002 * 109.47074 * 175.34438 * 1 2 3
32 32 H 1.08997 * 109.46764 * 55.00130 * 4 2 1
33 33 H 1.08996 * 109.47020 * 174.99932 * 4 2 1
34 34 H 1.07997 * 126.57601 * 359.96351 * 6 5 4
35 35 H 1.07994 * 126.58010 * 179.97438 * 7 6 5
36 36 H 1.07997 * 125.78967 * 180.02562 * 8 7 6
37 37 H 1.09000 * 109.58411 * 246.20132 * 13 12 10
38 38 H 1.08993 * 109.58806 * 6.62975 * 13 12 10
39 39 H 1.08999 * 109.63489 * 294.86603 * 14 13 12
40 40 H 1.08998 * 109.43277 * 174.72364 * 14 13 12
41 41 H 1.08997 * 109.46060 * 58.53255 * 15 14 13
42 42 H 1.08997 * 109.47253 * 55.05713 * 16 15 14
43 43 H 1.09006 * 109.46821 * 175.05974 * 16 15 14
44 44 H 1.09000 * 109.47146 * 300.00618 * 17 16 15
45 45 H 1.09001 * 109.46790 * 59.99954 * 17 16 15
46 46 H 0.96997 * 120.00020 * 359.97438 * 18 17 16
47 47 H 0.96997 * 119.99918 * 180.02562 * 22 21 19
48 48 H 1.09002 * 109.49856 * 301.40951 * 27 15 14
49 49 H 1.08996 * 109.52654 * 181.33516 * 27 15 14
50 50 H 1.08997 * 109.58652 * 353.36683 * 28 12 10
51 51 H 1.09002 * 109.59149 * 113.65381 * 28 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7212 1.2492
5 6 1.6414 0.0570 2.4766
6 6 0.5010 -0.1010 3.1722
7 6 0.5392 0.8274 4.2378
8 6 1.7010 1.4968 4.1300
9 8 2.3671 1.0220 3.0647
10 6 2.0323 -0.7104 -1.2305
11 8 1.3396 -1.5438 -1.7748
12 7 3.2515 -0.4195 -1.7261
13 6 4.1462 0.5060 -1.0176
14 6 5.4976 -0.1913 -0.8003
15 6 6.0364 -0.6782 -2.1475
16 6 7.4002 -1.3405 -1.9415
17 6 8.4064 -0.2955 -1.4553
18 7 9.7123 -0.9295 -1.2586
19 6 10.7759 -0.1853 -0.8227
20 1 10.6522 0.8690 -0.6243
21 6 12.0133 -0.7862 -0.6358
22 7 12.1640 -2.0713 -0.8771
23 14 13.4645 0.2291 -0.0419
24 1 13.1474 0.8173 1.2842
25 1 14.6622 -0.6409 0.0755
26 1 13.7376 1.3181 -1.0140
27 6 5.0629 -1.6929 -2.7515
28 6 3.7086 -1.0170 -2.9881
29 1 -0.3633 0.4398 0.9288
30 1 -0.3634 0.5844 -0.8453
31 1 -0.3633 -1.0243 -0.0834
32 1 1.6055 -1.7198 1.2951
33 1 3.1264 -0.7994 1.2055
34 1 -0.2922 -0.8017 2.9572
35 1 -0.2189 0.9715 4.9934
36 1 2.0424 2.2799 4.7907
37 1 4.2883 1.4062 -1.6155
38 1 3.7104 0.7698 -0.0541
39 1 5.3674 -1.0422 -0.1316
40 1 6.2027 0.5136 -0.3599
41 1 6.1430 0.1698 -2.8239
42 1 7.3109 -2.1325 -1.1979
43 1 7.7442 -1.7648 -2.8848
44 1 8.4956 0.4965 -2.1988
45 1 8.0623 0.1288 -0.5120
46 1 9.8234 -1.8766 -1.4364
47 1 13.0285 -2.4912 -0.7462
48 1 4.9368 -2.5296 -2.0644
49 1 5.4582 -2.0572 -3.6997
50 1 2.9841 -1.7584 -3.3249
51 1 3.8134 -0.2387 -3.7441
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001482005792.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:25:58
Heat of formation + Delta-G solvation = -48.699656 kcal
Electronic energy + Delta-G solvation = -28991.621357 eV
Core-core repulsion = 25084.314853 eV
Total energy + Delta-G solvation = -3907.306504 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-43.48621 -41.46803 -39.12851 -36.88605 -36.33746 -35.00205 -33.77548 -32.98105
-32.05015 -30.84792 -29.88837 -27.67681 -26.72606 -25.19125 -24.31091 -23.80521
-22.61322 -22.23932 -21.35841 -21.14961 -19.68699 -19.13063 -18.59862 -18.05111
-17.19493 -16.76189 -16.63897 -16.34336 -15.84927 -15.71818 -15.44875 -15.40348
-15.27084 -14.97468 -14.64326 -14.38061 -14.13644 -13.99466 -13.77025 -13.68904
-13.50845 -13.35172 -13.10757 -13.03363 -12.81498 -12.73124 -12.50004 -12.30937
-12.27341 -12.18683 -12.13408 -12.05406 -11.94301 -11.62432 -11.36227 -11.18284
-10.87243 -10.78346 -10.74800 -9.66832 -9.33432 -8.98748 -7.95009 -5.24032
0.80179 1.47203 1.50442 1.50704 1.56858 1.76070 1.95333 2.18443
2.56575 3.36556 3.38644 3.69404 3.72165 3.77271 3.82410 3.88390
3.98813 4.11650 4.17054 4.21041 4.27499 4.31643 4.34756 4.41061
4.50193 4.54443 4.60178 4.63862 4.68688 4.78431 4.84747 4.86688
4.90552 4.95963 4.98711 5.02762 5.06400 5.07596 5.11033 5.22311
5.26406 5.27459 5.31095 5.41119 5.49495 5.55689 5.59972 5.65167
6.25390 6.27729 6.36864 7.10642 7.33130 8.11160 8.32915 9.28736
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.011686 B = 0.002429 C = 0.002077
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2395.364470 B =11522.859422 C =13478.548463
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.099 4.099
3 H 0.110 0.890
4 C -0.027 4.027
5 C -0.022 4.022
6 C -0.211 4.211
7 C -0.227 4.227
8 C -0.044 4.044
9 O -0.191 6.191
10 C 0.519 3.481
11 O -0.578 6.578
12 N -0.607 5.607
13 C 0.106 3.894
14 C -0.129 4.129
15 C -0.073 4.073
16 C -0.109 4.109
17 C 0.151 3.849
18 N -0.751 5.751
19 C -0.247 4.247
20 H 0.077 0.923
21 C -0.079 4.079
22 N -0.972 5.972
23 Si 0.975 3.025
24 H -0.276 1.276
25 H -0.296 1.296
26 H -0.277 1.277
27 C -0.121 4.121
28 C 0.112 3.888
29 H 0.078 0.922
30 H 0.057 0.943
31 H 0.058 0.942
32 H 0.100 0.900
33 H 0.087 0.913
34 H 0.157 0.843
35 H 0.165 0.835
36 H 0.231 0.769
37 H 0.089 0.911
38 H 0.100 0.900
39 H 0.059 0.941
40 H 0.082 0.918
41 H 0.082 0.918
42 H 0.051 0.949
43 H 0.056 0.944
44 H 0.019 0.981
45 H 0.027 0.973
46 H 0.372 0.628
47 H 0.251 0.749
48 H 0.054 0.946
49 H 0.083 0.917
50 H 0.079 0.921
51 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.886 8.172 4.983 29.483
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.120 4.120
3 H 0.128 0.872
4 C -0.064 4.064
5 C -0.072 4.072
6 C -0.231 4.231
7 C -0.246 4.246
8 C -0.111 4.111
9 O -0.087 6.087
10 C 0.308 3.692
11 O -0.458 6.458
12 N -0.340 5.340
13 C -0.016 4.016
14 C -0.167 4.167
15 C -0.092 4.092
16 C -0.146 4.146
17 C 0.025 3.975
18 N -0.394 5.394
19 C -0.378 4.378
20 H 0.095 0.905
21 C -0.271 4.271
22 N -0.623 5.623
23 Si 0.804 3.196
24 H -0.202 1.202
25 H -0.222 1.222
26 H -0.203 1.203
27 C -0.159 4.159
28 C -0.010 4.010
29 H 0.096 0.904
30 H 0.077 0.923
31 H 0.077 0.923
32 H 0.119 0.881
33 H 0.106 0.894
34 H 0.175 0.825
35 H 0.183 0.817
36 H 0.248 0.752
37 H 0.107 0.893
38 H 0.118 0.882
39 H 0.078 0.922
40 H 0.100 0.900
41 H 0.101 0.899
42 H 0.069 0.931
43 H 0.075 0.925
44 H 0.037 0.963
45 H 0.045 0.955
46 H 0.203 0.797
47 H 0.060 0.940
48 H 0.073 0.927
49 H 0.101 0.899
50 H 0.097 0.903
51 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -27.887 7.996 4.633 29.378
hybrid contribution 1.071 -0.309 0.339 1.165
sum -26.815 7.688 4.972 28.335
Atomic orbital electron populations
1.21707 0.91811 1.02874 1.02792 1.21295 0.98874 1.00913 0.90939
0.87222 1.20002 1.02676 0.97277 0.86458 1.22250 0.92712 0.93978
0.98253 1.21874 0.99441 1.03950 0.97790 1.22163 1.00384 0.99815
1.02261 1.24738 0.93306 1.02354 0.90675 1.84026 1.44688 1.43476
1.36546 1.20905 0.80729 0.81900 0.85686 1.90663 1.57523 1.35110
1.62497 1.48280 1.15451 1.46046 1.24185 1.22075 0.89272 0.91997
0.98232 1.22079 0.96385 1.01059 0.97218 1.21003 0.92603 0.98305
0.97302 1.21632 0.94535 0.97841 1.00641 1.20891 0.84468 0.94847
0.97259 1.42664 1.06704 1.09302 1.80686 1.19638 0.89521 0.93267
1.35410 0.90521 1.25623 1.00722 0.97137 1.03625 1.69817 1.24188
1.11159 1.57139 0.85185 0.78508 0.77454 0.78479 1.20206 1.22193
1.20254 1.21886 0.94248 0.97925 1.01858 1.21628 0.95598 0.98395
0.85376 0.90360 0.92347 0.92269 0.88124 0.89435 0.82539 0.81719
0.75244 0.89301 0.88210 0.92249 0.89998 0.89942 0.93068 0.92537
0.96338 0.95545 0.79700 0.94005 0.92671 0.89858 0.90284 0.89802
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.07 8.65 71.98 0.62 -1.45 16
2 C -0.10 -1.56 1.84 -11.54 -0.02 -1.58 16
3 H 0.11 1.44 6.73 -2.39 -0.02 1.42 16
4 C -0.03 -0.42 4.91 29.85 0.15 -0.27 16
5 C -0.02 -0.37 6.06 24.83 0.15 -0.22 16
6 C -0.21 -3.23 9.29 22.19 0.21 -3.02 16
7 C -0.23 -3.05 10.91 22.19 0.24 -2.80 16
8 C -0.04 -0.58 12.09 66.97 0.81 0.23 16
9 O -0.19 -3.40 10.65 -2.51 -0.03 -3.42 16
10 C 0.52 11.03 6.80 87.66 0.60 11.63 16
11 O -0.58 -16.53 15.42 -3.01 -0.05 -16.58 16
12 N -0.61 -11.47 2.97 -818.08 -2.43 -13.89 16
13 C 0.11 1.64 5.95 86.51 0.51 2.15 16
14 C -0.13 -2.58 5.16 30.82 0.16 -2.42 16
15 C -0.07 -1.62 2.15 -10.76 -0.02 -1.64 16
16 C -0.11 -3.32 4.80 30.60 0.15 -3.18 16
17 C 0.15 5.86 6.01 86.38 0.52 6.38 16
18 N -0.75 -38.75 5.60 -343.46 -1.92 -40.67 16
19 C -0.25 -13.91 9.99 84.04 0.84 -13.07 16
20 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16
21 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16
22 N -0.97 -60.33 13.06 21.65 0.28 -60.05 16
23 Si 0.98 46.20 29.55 68.60 2.03 48.23 16
24 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16
25 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16
26 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16
27 C -0.12 -2.46 5.36 30.67 0.16 -2.29 16
28 C 0.11 2.15 6.44 86.36 0.56 2.70 16
29 H 0.08 1.04 6.14 -2.39 -0.01 1.02 16
30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16
31 H 0.06 1.05 7.70 -2.39 -0.02 1.03 16
32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16
33 H 0.09 1.39 7.20 -2.39 -0.02 1.37 16
34 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16
35 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16
36 H 0.23 1.31 8.06 -2.91 -0.02 1.28 16
37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16
38 H 0.10 1.30 4.89 -2.39 -0.01 1.29 16
39 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16
40 H 0.08 1.72 6.50 -2.39 -0.02 1.71 16
41 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16
42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16
43 H 0.06 1.79 8.14 -2.38 -0.02 1.78 16
44 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16
45 H 0.03 1.00 6.53 -2.39 -0.02 0.99 16
46 H 0.37 20.50 7.67 -92.71 -0.71 19.79 16
47 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16
48 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16
49 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16
50 H 0.08 1.74 7.00 -2.39 -0.02 1.72 16
51 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16
Total: -1.00 -72.38 400.70 4.19 -68.20
By element:
Atomic # 1 Polarization: 30.95 SS G_CDS: 0.21 Total: 31.16 kcal
Atomic # 6 Polarization: -19.07 SS G_CDS: 6.10 Total: -12.97 kcal
Atomic # 7 Polarization: -110.54 SS G_CDS: -4.07 Total: -114.61 kcal
Atomic # 8 Polarization: -19.93 SS G_CDS: -0.07 Total: -20.00 kcal
Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal
Total: -72.38 4.19 -68.20 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001482005792.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.496 kcal
(2) G-P(sol) polarization free energy of solvation -72.384 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.888 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.195 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.700 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds