Wall clock time and date at job start Tue Mar 31 2020 20:24:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35899 * 117.00080 * 2 1
4 4 C 1.38731 * 120.05275 * 359.72106 * 3 2 1
5 5 C 1.38145 * 119.94233 * 179.77415 * 4 3 2
6 6 C 1.38267 * 120.05599 * 0.50270 * 5 4 3
7 7 C 1.50704 * 119.94531 * 179.77301 * 6 5 4
8 8 C 1.52999 * 109.46537 * 269.97515 * 7 6 5
9 9 H 1.09004 * 109.47177 * 55.00580 * 8 7 6
10 10 C 1.52995 * 109.47503 * 294.99898 * 8 7 6
11 11 C 1.50708 * 109.46776 * 174.99905 * 8 7 6
12 12 O 1.21282 * 119.99894 * 11.14655 * 11 8 7
13 13 N 1.34770 * 120.00018 * 191.14551 * 11 8 7
14 14 C 1.46499 * 119.99869 * 184.45781 * 13 11 8
15 15 C 1.46496 * 120.00038 * 4.45324 * 13 11 8
16 16 H 1.09000 * 109.47291 * 354.89059 * 15 13 11
17 17 C 1.53002 * 109.47135 * 114.89385 * 15 13 11
18 18 C 1.53003 * 109.47436 * 234.89193 * 15 13 11
19 19 N 1.46499 * 109.47187 * 54.99761 * 18 15 13
20 20 C 1.36938 * 120.00376 * 180.02562 * 19 18 15
21 21 H 1.08002 * 119.99362 * 359.97438 * 20 19 18
22 22 C 1.38806 * 119.99948 * 180.02562 * 20 19 18
23 23 N 1.31614 * 120.00371 * 359.97438 * 22 20 19
24 24 Si 1.86808 * 119.99774 * 179.97438 * 22 20 19
25 25 H 1.48497 * 109.46905 * 89.99703 * 24 22 20
26 26 H 1.48501 * 109.47129 * 210.00047 * 24 22 20
27 27 H 1.48504 * 109.47053 * 329.99811 * 24 22 20
28 28 C 1.38260 * 120.11025 * 359.74501 * 6 5 4
29 29 C 1.38145 * 120.05685 * 0.02562 * 28 6 5
30 30 H 1.09009 * 109.47254 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47385 * 300.00289 * 1 2 3
32 32 H 1.09000 * 109.47147 * 60.00875 * 1 2 3
33 33 H 1.08003 * 120.03122 * 359.97438 * 4 3 2
34 34 H 1.08001 * 119.97213 * 180.25298 * 5 4 3
35 35 H 1.08997 * 109.47212 * 29.97837 * 7 6 5
36 36 H 1.09000 * 109.46802 * 149.97359 * 7 6 5
37 37 H 1.09001 * 109.47144 * 53.36570 * 10 8 7
38 38 H 1.09000 * 109.47236 * 173.37069 * 10 8 7
39 39 H 1.09000 * 109.47251 * 293.37063 * 10 8 7
40 40 H 1.09003 * 109.47317 * 84.91903 * 14 13 11
41 41 H 1.08998 * 109.47102 * 204.91892 * 14 13 11
42 42 H 1.08998 * 109.47140 * 324.91296 * 14 13 11
43 43 H 1.08997 * 109.47248 * 180.02562 * 17 15 13
44 44 H 1.09007 * 109.46731 * 299.99940 * 17 15 13
45 45 H 1.09000 * 109.47297 * 59.99678 * 17 15 13
46 46 H 1.08998 * 109.47377 * 175.00436 * 18 15 13
47 47 H 1.08999 * 109.46997 * 295.00557 * 18 15 13
48 48 H 0.97001 * 120.00004 * 0.02562 * 19 18 15
49 49 H 0.97001 * 120.00311 * 180.02562 * 23 22 20
50 50 H 1.08006 * 119.97502 * 179.97438 * 28 6 5
51 51 H 1.08003 * 120.02822 * 179.97438 * 29 28 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2109 0.0000
4 6 1.2915 2.3750 -0.0058
5 6 1.9210 3.6047 -0.0011
6 6 3.3018 3.6758 -0.0011
7 6 3.9860 5.0186 -0.0011
8 6 4.2181 5.4725 -1.4436
9 1 3.2709 5.4674 -1.9830
10 6 5.1994 4.5183 -2.1270
11 6 4.7896 6.8671 -1.4455
12 8 5.1797 7.3640 -0.4102
13 7 4.8672 7.5619 -2.5977
14 6 5.5112 8.8776 -2.6176
15 6 4.3076 7.0015 -3.8302
16 1 3.9555 5.9874 -3.6411
17 6 3.1376 7.8686 -4.2994
18 6 5.3876 6.9726 -4.9136
19 7 6.5570 6.2423 -4.4181
20 6 7.6569 6.0867 -5.2189
21 1 7.6621 6.5019 -6.2158
22 6 8.7646 5.3943 -4.7495
23 7 8.7581 4.8878 -3.5347
24 14 10.2648 5.1814 -5.8421
25 1 11.1962 6.3185 -5.6312
26 1 10.9505 3.9096 -5.4991
27 1 9.8402 5.1467 -7.2647
28 6 4.0560 2.5170 -0.0004
29 6 3.4313 1.2849 -0.0004
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3634 0.5139 0.8899
32 1 -0.3633 0.5137 -0.8901
33 1 0.2129 2.3201 -0.0108
34 1 1.3341 4.5113 -0.0015
35 1 3.3578 5.7464 0.5124
36 1 4.9437 4.9383 0.5132
37 1 4.8426 3.4937 -2.0222
38 1 5.2745 4.7705 -3.1848
39 1 6.1804 4.6108 -1.6610
40 1 6.5872 8.7537 -2.7402
41 1 5.1160 9.4630 -3.4478
42 1 5.3095 9.3951 -1.6798
43 1 2.7210 7.4514 -5.2162
44 1 2.3682 7.8891 -3.5275
45 1 3.4898 8.8826 -4.4885
46 1 4.9980 6.4751 -5.8018
47 1 5.6765 7.9928 -5.1659
48 1 6.5521 5.8691 -3.5228
49 1 9.5323 4.4043 -3.2066
50 1 5.1345 2.5750 -0.0008
51 1 4.0208 0.3799 -0.0003
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001482368515.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:24:39
Heat of formation + Delta-G solvation = -36.745975 kcal
Electronic energy + Delta-G solvation = -29963.522267 eV
Core-core repulsion = 26056.734114 eV
Total energy + Delta-G solvation = -3906.788154 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-40.37955 -39.83734 -37.86949 -36.63814 -34.41670 -33.83233 -31.47055 -31.20376
-30.32558 -30.02463 -27.88424 -26.73611 -25.99243 -25.66733 -23.18150 -22.73003
-22.39766 -21.17504 -20.51783 -18.42874 -18.21642 -17.18973 -16.99281 -16.28363
-15.89000 -15.55115 -15.23614 -15.10974 -14.65822 -14.41509 -14.15263 -13.83117
-13.71053 -13.62685 -13.40837 -13.12544 -13.03883 -12.61122 -12.46009 -12.29889
-12.18828 -12.06135 -11.86487 -11.72246 -11.59157 -11.39861 -11.27385 -11.09142
-10.91892 -10.86663 -10.80037 -10.69013 -10.59425 -10.44187 -10.01738 -9.68662
-9.23032 -8.97424 -8.89168 -8.20099 -8.08464 -6.93052 -5.76408 -3.05398
1.33099 1.39366 3.07527 3.14534 3.40514 3.43651 3.48679 3.50259
3.75632 4.57335 4.66745 4.71851 4.81294 4.90674 4.91677 5.03375
5.10020 5.20899 5.23172 5.28047 5.33514 5.38712 5.46548 5.48551
5.57441 5.61015 5.66657 5.75293 5.89253 5.91126 5.92794 5.99048
6.09187 6.12552 6.20722 6.27400 6.29628 6.32607 6.34876 6.37913
6.46799 6.52679 6.65120 6.71546 6.76581 6.93858 6.99244 7.30300
7.69668 7.82210 8.42369 8.61749 9.54251 10.10381 10.46335 11.45685
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.010730 B = 0.003330 C = 0.002866
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2608.874023 B = 8407.481084 C = 9766.340279
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.320 6.320
3 C 0.116 3.884
4 C -0.208 4.208
5 C -0.079 4.079
6 C -0.108 4.108
7 C -0.057 4.057
8 C -0.102 4.102
9 H 0.086 0.914
10 C -0.157 4.157
11 C 0.523 3.477
12 O -0.550 6.550
13 N -0.596 5.596
14 C 0.091 3.909
15 C 0.115 3.885
16 H 0.096 0.904
17 C -0.159 4.159
18 C 0.140 3.860
19 N -0.731 5.731
20 C -0.244 4.244
21 H 0.069 0.931
22 C -0.010 4.010
23 N -0.927 5.927
24 Si 0.905 3.095
25 H -0.291 1.291
26 H -0.291 1.291
27 H -0.283 1.283
28 C -0.070 4.070
29 C -0.149 4.149
30 H 0.097 0.903
31 H 0.053 0.947
32 H 0.054 0.946
33 H 0.124 0.876
34 H 0.123 0.877
35 H 0.073 0.927
36 H 0.082 0.918
37 H 0.064 0.936
38 H 0.082 0.918
39 H 0.074 0.926
40 H 0.062 0.938
41 H 0.064 0.936
42 H 0.065 0.935
43 H 0.068 0.932
44 H 0.055 0.945
45 H 0.060 0.940
46 H 0.030 0.970
47 H 0.023 0.977
48 H 0.390 0.610
49 H 0.255 0.745
50 H 0.134 0.866
51 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.848 -3.103 5.709 19.937
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.234 6.234
3 C 0.072 3.928
4 C -0.227 4.227
5 C -0.097 4.097
6 C -0.108 4.108
7 C -0.095 4.095
8 C -0.124 4.124
9 H 0.104 0.896
10 C -0.214 4.214
11 C 0.311 3.689
12 O -0.428 6.428
13 N -0.328 5.328
14 C -0.052 4.052
15 C 0.011 3.989
16 H 0.114 0.886
17 C -0.218 4.218
18 C 0.011 3.989
19 N -0.379 5.379
20 C -0.375 4.375
21 H 0.087 0.913
22 C -0.206 4.206
23 N -0.575 5.575
24 Si 0.737 3.263
25 H -0.218 1.218
26 H -0.218 1.218
27 H -0.209 1.209
28 C -0.088 4.088
29 C -0.167 4.167
30 H 0.115 0.885
31 H 0.072 0.928
32 H 0.073 0.927
33 H 0.142 0.858
34 H 0.141 0.859
35 H 0.091 0.909
36 H 0.101 0.899
37 H 0.083 0.917
38 H 0.101 0.899
39 H 0.093 0.907
40 H 0.080 0.920
41 H 0.083 0.917
42 H 0.083 0.917
43 H 0.087 0.913
44 H 0.074 0.926
45 H 0.079 0.921
46 H 0.048 0.952
47 H 0.041 0.959
48 H 0.228 0.772
49 H 0.065 0.935
50 H 0.152 0.848
51 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -18.437 -3.019 6.116 19.658
hybrid contribution 0.649 -0.098 -0.538 0.849
sum -17.788 -3.116 5.577 18.901
Atomic orbital electron populations
1.23014 0.78711 1.03684 1.01253 1.86061 1.21133 1.27214 1.88981
1.19025 0.92402 0.83985 0.97413 1.21153 0.99700 0.92382 1.09444
1.20825 0.94015 0.96886 0.97989 1.19826 0.93357 0.95369 1.02250
1.20352 1.01330 0.92460 0.95344 1.21289 1.00494 0.92710 0.97873
0.89564 1.22128 0.98941 0.98015 1.02329 1.20567 0.78264 0.87158
0.82891 1.90639 1.49666 1.70695 1.31772 1.47688 1.57684 1.19173
1.08268 1.21506 0.98475 0.83646 1.01534 1.21653 0.94017 0.97953
0.85235 0.88622 1.22119 0.97645 1.00646 1.01394 1.21036 0.87975
0.96114 0.93785 1.42589 1.12796 1.65007 1.17532 1.19188 0.92795
1.29003 0.96485 0.91338 1.24713 0.98303 1.00937 0.96679 1.69644
1.30345 1.41334 1.16217 0.86224 0.83318 0.77147 0.79658 1.21833
1.21781 1.20854 1.21026 1.00395 0.90825 0.96541 1.20448 0.91265
0.98772 1.06225 0.88465 0.92817 0.92723 0.85797 0.85945 0.90866
0.89923 0.91709 0.89909 0.90690 0.91966 0.91682 0.91661 0.91302
0.92575 0.92125 0.95232 0.95921 0.77200 0.93506 0.84785 0.85263
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.20 9.81 101.05 0.99 1.19 16
2 O -0.32 -3.63 10.50 -19.42 -0.20 -3.83 16
3 C 0.12 1.41 6.69 -39.22 -0.26 1.15 16
4 C -0.21 -2.27 9.04 -39.43 -0.36 -2.62 16
5 C -0.08 -0.90 9.69 -39.60 -0.38 -1.28 16
6 C -0.11 -1.38 4.72 -104.60 -0.49 -1.87 16
7 C -0.06 -0.80 4.14 -27.88 -0.12 -0.92 16
8 C -0.10 -1.57 1.85 -91.77 -0.17 -1.74 16
9 H 0.09 1.15 7.06 -51.93 -0.37 0.79 16
10 C -0.16 -2.74 7.52 37.16 0.28 -2.46 16
11 C 0.52 9.49 6.92 -10.98 -0.08 9.42 16
12 O -0.55 -11.54 15.68 5.56 0.09 -11.46 16
13 N -0.60 -10.16 2.20 -173.93 -0.38 -10.54 16
14 C 0.09 1.50 9.40 59.85 0.56 2.07 16
15 C 0.12 1.77 2.11 -67.93 -0.14 1.63 16
16 H 0.10 1.44 4.43 -51.93 -0.23 1.21 16
17 C -0.16 -1.86 9.26 37.16 0.34 -1.52 16
18 C 0.14 2.64 5.44 -4.04 -0.02 2.62 16
19 N -0.73 -17.71 4.89 -59.91 -0.29 -18.01 16
20 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16
21 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16
22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16
23 N -0.93 -27.31 13.06 55.49 0.72 -26.59 16
24 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16
25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
27 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16
28 C -0.07 -0.90 7.85 -39.61 -0.31 -1.21 16
29 C -0.15 -1.87 9.99 -39.43 -0.39 -2.26 16
30 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16
31 H 0.05 0.33 7.67 -51.93 -0.40 -0.07 16
32 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16
33 H 0.12 1.05 6.30 -52.48 -0.33 0.72 16
34 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16
35 H 0.07 0.99 8.05 -51.93 -0.42 0.58 16
36 H 0.08 1.27 8.06 -51.93 -0.42 0.85 16
37 H 0.06 1.02 5.80 -51.93 -0.30 0.72 16
38 H 0.08 1.61 4.13 -51.93 -0.21 1.40 16
39 H 0.07 1.54 8.11 -51.93 -0.42 1.12 16
40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
41 H 0.06 0.90 6.57 -51.93 -0.34 0.56 16
42 H 0.06 1.05 7.52 -51.93 -0.39 0.66 16
43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
45 H 0.06 0.69 6.90 -51.93 -0.36 0.33 16
46 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
47 H 0.02 0.44 7.62 -51.93 -0.40 0.04 16
48 H 0.39 9.71 4.46 -40.82 -0.18 9.52 16
49 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16
50 H 0.13 1.70 7.95 -52.48 -0.42 1.28 16
51 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16
LS Contribution 398.38 15.07 6.00 6.00
Total: -1.00 -32.87 398.38 -7.97 -40.84
By element:
Atomic # 1 Polarization: 19.44 SS G_CDS: -8.09 Total: 11.35 kcal
Atomic # 6 Polarization: -4.18 SS G_CDS: -0.80 Total: -4.98 kcal
Atomic # 7 Polarization: -55.18 SS G_CDS: 0.05 Total: -55.14 kcal
Atomic # 8 Polarization: -15.17 SS G_CDS: -0.12 Total: -15.29 kcal
Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal
Total LS contribution 6.00 Total: 6.00 kcal
Total: -32.87 -7.97 -40.84 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001482368515.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.095 kcal
(2) G-P(sol) polarization free energy of solvation -32.868 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.774 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.746 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds