Wall clock time and date at job start Tue Mar 31 2020 20:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 117.00052 * 2 1 4 4 C 1.38728 * 120.05460 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.94362 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05246 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.94385 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47348 * 89.99591 * 7 6 5 9 9 H 1.08999 * 109.47303 * 304.99888 * 8 7 6 10 10 C 1.52998 * 109.46789 * 65.00345 * 8 7 6 11 11 C 1.50700 * 109.46871 * 185.00398 * 8 7 6 12 12 O 1.21277 * 120.00010 * 341.83631 * 11 8 7 13 13 N 1.34779 * 119.99839 * 161.84385 * 11 8 7 14 14 C 1.46502 * 120.00037 * 184.12700 * 13 11 8 15 15 C 1.46499 * 119.99898 * 4.13162 * 13 11 8 16 16 H 1.08999 * 109.47675 * 5.96661 * 15 13 11 17 17 C 1.52999 * 109.47344 * 125.97291 * 15 13 11 18 18 C 1.53007 * 109.46946 * 245.97083 * 15 13 11 19 19 N 1.46492 * 109.46941 * 54.99880 * 18 15 13 20 20 C 1.36941 * 119.99935 * 180.02562 * 19 18 15 21 21 H 1.08000 * 119.99938 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00116 * 180.02562 * 20 19 18 23 23 N 1.31622 * 119.99915 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99914 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47115 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46807 * 120.00244 * 24 22 20 27 27 H 1.48498 * 109.47235 * 239.99877 * 24 22 20 28 28 C 1.38262 * 120.11546 * 0.27199 * 6 5 4 29 29 C 1.38152 * 120.05104 * 359.45188 * 28 6 5 30 30 H 1.09006 * 109.47186 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46947 * 299.99991 * 1 2 3 32 32 H 1.08996 * 109.47133 * 60.00402 * 1 2 3 33 33 H 1.08004 * 120.02709 * 359.95461 * 4 3 2 34 34 H 1.07998 * 119.96998 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.46368 * 329.99772 * 7 6 5 36 36 H 1.08998 * 109.46771 * 210.00020 * 7 6 5 37 37 H 1.08996 * 109.47143 * 53.10515 * 10 8 7 38 38 H 1.09001 * 109.46917 * 173.10456 * 10 8 7 39 39 H 1.09001 * 109.47282 * 293.09894 * 10 8 7 40 40 H 1.08998 * 109.47470 * 271.53277 * 14 13 11 41 41 H 1.09003 * 109.46609 * 31.53165 * 14 13 11 42 42 H 1.08996 * 109.46872 * 151.52817 * 14 13 11 43 43 H 1.09002 * 109.47168 * 299.99935 * 17 15 13 44 44 H 1.08999 * 109.47249 * 59.99109 * 17 15 13 45 45 H 1.08995 * 109.47428 * 180.02562 * 17 15 13 46 46 H 1.08997 * 109.47019 * 175.00111 * 18 15 13 47 47 H 1.09007 * 109.46898 * 294.99893 * 18 15 13 48 48 H 0.97005 * 120.00213 * 0.02562 * 19 18 15 49 49 H 0.97007 * 119.99615 * 179.97438 * 23 22 20 50 50 H 1.08001 * 119.97289 * 179.70618 * 28 6 5 51 51 H 1.08005 * 120.02266 * 180.27510 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6757 -0.0005 7 6 3.9861 5.0185 -0.0017 8 6 4.2160 5.4725 -1.4446 9 1 4.7683 4.7030 -1.9840 10 6 2.8667 5.7052 -2.1271 11 6 5.0083 6.7545 -1.4475 12 8 5.0750 7.4284 -0.4414 13 7 5.6425 7.1521 -2.5683 14 6 6.4861 8.3497 -2.5469 15 6 5.4882 6.3869 -3.8079 16 1 4.7481 5.6005 -3.6599 17 6 5.0243 7.3194 -4.9287 18 6 6.8301 5.7587 -4.1899 19 7 7.3320 4.9601 -3.0690 20 6 8.5264 4.2995 -3.1797 21 1 9.0981 4.3668 -4.0935 22 6 9.0018 3.5423 -2.1178 23 7 8.3048 3.4599 -1.0043 24 14 10.6307 2.6405 -2.2691 25 1 11.2138 2.8936 -3.6111 26 1 11.5656 3.1286 -1.2236 27 1 10.4079 1.1830 -2.0925 28 6 1.9211 3.6048 0.0062 29 6 1.2916 2.3750 0.0010 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 4.0208 0.3798 -0.0002 34 1 5.1346 2.5750 -0.0011 35 1 4.9446 4.9383 0.5111 36 1 3.3586 5.7464 0.5126 37 1 2.2652 6.3829 -1.5214 38 1 3.0284 6.1444 -3.1116 39 1 2.3452 4.7542 -2.2348 40 1 5.8781 9.2265 -2.7698 41 1 6.9350 8.4602 -1.5598 42 1 7.2728 8.2533 -3.2952 43 1 4.0683 7.7669 -4.6566 44 1 5.7644 8.1057 -5.0768 45 1 4.9091 6.7499 -5.8509 46 1 6.6963 5.1179 -5.0614 47 1 7.5463 6.5463 -4.4244 48 1 6.8184 4.8993 -2.2483 49 1 8.6369 2.9304 -0.2623 50 1 1.3343 4.5114 0.0114 51 1 0.2129 2.3202 0.0018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482368521.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:43 Heat of formation + Delta-G solvation = -41.630056 kcal Electronic energy + Delta-G solvation = -30228.238066 eV Core-core repulsion = 26321.238122 eV Total energy + Delta-G solvation = -3906.999943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.24839 -39.75746 -37.70279 -36.59015 -34.36259 -33.87021 -31.46751 -30.91366 -30.34967 -30.00180 -27.69713 -26.88100 -26.06125 -25.63593 -23.05480 -22.48932 -22.42463 -21.18426 -20.47973 -18.26789 -18.02598 -17.28295 -16.96130 -16.13295 -15.76004 -15.60954 -15.12508 -15.04409 -14.66153 -14.23678 -14.14454 -13.72414 -13.65777 -13.49923 -13.27294 -13.20043 -13.00905 -12.54932 -12.47291 -12.29209 -12.19692 -11.98885 -11.91376 -11.83779 -11.71190 -11.35290 -11.28648 -11.04399 -10.89316 -10.81290 -10.78357 -10.65719 -10.57981 -10.41602 -10.03709 -9.72737 -9.21998 -8.90076 -8.78068 -8.20829 -7.90837 -6.93584 -5.77050 -3.05712 1.54666 1.58412 3.10989 3.29612 3.41391 3.43691 3.49001 3.51068 3.94948 4.57282 4.75051 4.83475 4.98170 5.01474 5.04421 5.05654 5.17475 5.22638 5.31379 5.32700 5.39133 5.46216 5.54301 5.57506 5.60019 5.62200 5.81773 5.83762 5.85184 5.92214 5.93454 5.96946 6.00711 6.06816 6.15005 6.21306 6.25291 6.28705 6.42851 6.44909 6.50430 6.54831 6.56749 6.65535 6.95414 6.96641 7.01934 7.47983 7.69669 7.82718 8.41171 8.64529 9.53151 10.08755 10.43996 11.45332 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008593 B = 0.004254 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3257.538571 B = 6581.154249 C = 8711.285926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.115 3.885 4 C -0.147 4.147 5 C -0.064 4.064 6 C -0.108 4.108 7 C -0.055 4.055 8 C -0.106 4.106 9 H 0.105 0.895 10 C -0.144 4.144 11 C 0.528 3.472 12 O -0.549 6.549 13 N -0.597 5.597 14 C 0.093 3.907 15 C 0.117 3.883 16 H 0.096 0.904 17 C -0.157 4.157 18 C 0.139 3.861 19 N -0.728 5.728 20 C -0.242 4.242 21 H 0.069 0.931 22 C -0.009 4.009 23 N -0.927 5.927 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.291 1.291 28 C -0.079 4.079 29 C -0.213 4.213 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.128 0.872 34 H 0.144 0.856 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.030 0.970 47 H 0.022 0.978 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.121 0.879 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.850 1.406 -2.447 17.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.070 3.930 4 C -0.166 4.166 5 C -0.081 4.081 6 C -0.109 4.109 7 C -0.093 4.093 8 C -0.127 4.127 9 H 0.123 0.877 10 C -0.202 4.202 11 C 0.316 3.684 12 O -0.427 6.427 13 N -0.330 5.330 14 C -0.050 4.050 15 C 0.013 3.987 16 H 0.114 0.886 17 C -0.216 4.216 18 C 0.010 3.990 19 N -0.373 5.373 20 C -0.373 4.373 21 H 0.087 0.913 22 C -0.205 4.205 23 N -0.576 5.576 24 Si 0.735 3.265 25 H -0.207 1.207 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.097 4.097 29 C -0.232 4.232 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.146 0.854 34 H 0.162 0.838 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.047 0.953 47 H 0.040 0.960 48 H 0.218 0.782 49 H 0.064 0.936 50 H 0.139 0.861 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.566 1.524 -1.988 16.754 hybrid contribution 0.661 -0.501 0.077 0.833 sum -15.904 1.023 -1.912 16.052 Atomic orbital electron populations 1.22986 0.78952 1.03504 1.01144 1.86063 1.20936 1.27376 1.89092 1.19037 0.92407 0.83871 0.97670 1.20477 0.91071 0.98956 1.06079 1.21232 1.01262 0.90612 0.95040 1.19807 0.93223 0.95350 1.02494 1.20322 1.01607 0.92515 0.94837 1.21290 0.96851 0.95871 0.98700 0.87744 1.21893 0.95648 1.02478 1.00171 1.20523 0.78962 0.86585 0.82311 1.90632 1.62753 1.56494 1.32788 1.47710 1.47588 1.27674 1.10016 1.21463 0.94074 0.86014 1.03402 1.21633 0.99415 0.93730 0.83962 0.88641 1.22073 1.01310 0.99984 0.98195 1.21065 0.91847 0.93817 0.92267 1.42302 1.23937 1.57155 1.13952 1.19223 0.96786 1.22172 0.99088 0.91260 1.24694 0.98735 1.00913 0.96191 1.69653 1.38745 1.44795 1.04382 0.86167 0.83735 0.79425 0.77126 1.20679 1.21944 1.21859 1.20815 0.94017 0.96682 0.98198 1.21101 0.99464 0.92427 1.10193 0.88613 0.92907 0.92846 0.85358 0.83819 0.89746 0.90745 0.92282 0.92237 0.91268 0.93744 0.91041 0.91136 0.92493 0.92059 0.91288 0.95254 0.96006 0.78162 0.93564 0.86103 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.17 10.50 -19.43 -0.20 -4.37 16 3 C 0.11 1.61 6.69 -39.22 -0.26 1.35 16 4 C -0.15 -2.26 9.99 -39.43 -0.39 -2.65 16 5 C -0.06 -1.03 9.69 -39.61 -0.38 -1.42 16 6 C -0.11 -1.63 4.72 -104.60 -0.49 -2.12 16 7 C -0.06 -0.89 4.20 -27.88 -0.12 -1.01 16 8 C -0.11 -1.70 1.75 -91.77 -0.16 -1.87 16 9 H 0.10 1.89 5.92 -51.93 -0.31 1.59 16 10 C -0.14 -1.82 8.11 37.16 0.30 -1.52 16 11 C 0.53 9.75 6.23 -10.98 -0.07 9.68 16 12 O -0.55 -11.71 15.76 5.56 0.09 -11.63 16 13 N -0.60 -10.11 2.34 -173.93 -0.41 -10.52 16 14 C 0.09 1.48 9.25 59.85 0.55 2.03 16 15 C 0.12 1.77 1.97 -67.93 -0.13 1.64 16 16 H 0.10 1.43 4.49 -51.93 -0.23 1.20 16 17 C -0.16 -1.81 9.10 37.16 0.34 -1.47 16 18 C 0.14 2.62 5.63 -4.04 -0.02 2.60 16 19 N -0.73 -17.68 5.43 -59.91 -0.33 -18.00 16 20 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 21 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -27.02 13.06 55.49 0.72 -26.30 16 24 Si 0.90 22.19 29.55 -169.99 -5.02 17.17 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 C -0.08 -1.02 8.15 -39.60 -0.32 -1.34 16 29 C -0.21 -2.64 9.04 -39.43 -0.36 -3.00 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 32 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 33 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 34 H 0.14 2.61 8.06 -52.49 -0.42 2.19 16 35 H 0.08 1.59 8.08 -51.93 -0.42 1.17 16 36 H 0.07 1.14 8.01 -51.93 -0.42 0.73 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.69 6.46 -51.93 -0.34 0.36 16 39 H 0.07 0.82 6.75 -51.93 -0.35 0.47 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.28 7.53 -51.93 -0.39 0.89 16 42 H 0.07 1.07 6.76 -51.93 -0.35 0.72 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.69 7.47 -51.93 -0.39 0.30 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.02 0.42 7.09 -51.93 -0.37 0.05 16 48 H 0.38 9.73 5.52 -40.82 -0.23 9.50 16 49 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 50 H 0.12 1.31 8.05 -52.49 -0.42 0.89 16 51 H 0.12 1.19 6.30 -52.48 -0.33 0.86 16 LS Contribution 402.63 15.07 6.07 6.07 Total: -1.00 -32.49 402.63 -8.12 -40.61 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -8.26 Total: 11.89 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -0.78 Total: -4.93 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.01 Total: -54.81 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.12 Total: -16.00 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.49 -8.12 -40.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482368521.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.018 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds