Wall clock time and date at job start Tue Mar 31 2020 20:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 117.00052 * 2 1 4 4 C 1.38728 * 120.05460 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.94362 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05246 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.94385 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47348 * 89.99591 * 7 6 5 9 9 H 1.08999 * 109.47303 * 304.99888 * 8 7 6 10 10 C 1.52998 * 109.46789 * 65.00345 * 8 7 6 11 11 C 1.50700 * 109.46871 * 185.00398 * 8 7 6 12 12 O 1.21277 * 120.00010 * 341.83631 * 11 8 7 13 13 N 1.34779 * 119.99839 * 161.84385 * 11 8 7 14 14 C 1.46502 * 120.00037 * 184.12700 * 13 11 8 15 15 C 1.46499 * 119.99898 * 4.13162 * 13 11 8 16 16 H 1.08999 * 109.47675 * 5.96661 * 15 13 11 17 17 C 1.52999 * 109.47344 * 125.97291 * 15 13 11 18 18 C 1.53007 * 109.46946 * 245.97083 * 15 13 11 19 19 N 1.46492 * 109.46941 * 54.99880 * 18 15 13 20 20 C 1.36941 * 119.99935 * 180.02562 * 19 18 15 21 21 H 1.08000 * 119.99938 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00116 * 180.02562 * 20 19 18 23 23 N 1.31622 * 119.99915 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99914 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47115 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46807 * 120.00244 * 24 22 20 27 27 H 1.48498 * 109.47235 * 239.99877 * 24 22 20 28 28 C 1.38262 * 120.11546 * 0.27199 * 6 5 4 29 29 C 1.38152 * 120.05104 * 359.45188 * 28 6 5 30 30 H 1.09006 * 109.47186 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46947 * 299.99991 * 1 2 3 32 32 H 1.08996 * 109.47133 * 60.00402 * 1 2 3 33 33 H 1.08004 * 120.02709 * 359.95461 * 4 3 2 34 34 H 1.07998 * 119.96998 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.46368 * 329.99772 * 7 6 5 36 36 H 1.08998 * 109.46771 * 210.00020 * 7 6 5 37 37 H 1.08996 * 109.47143 * 53.10515 * 10 8 7 38 38 H 1.09001 * 109.46917 * 173.10456 * 10 8 7 39 39 H 1.09001 * 109.47282 * 293.09894 * 10 8 7 40 40 H 1.08998 * 109.47470 * 271.53277 * 14 13 11 41 41 H 1.09003 * 109.46609 * 31.53165 * 14 13 11 42 42 H 1.08996 * 109.46872 * 151.52817 * 14 13 11 43 43 H 1.09002 * 109.47168 * 299.99935 * 17 15 13 44 44 H 1.08999 * 109.47249 * 59.99109 * 17 15 13 45 45 H 1.08995 * 109.47428 * 180.02562 * 17 15 13 46 46 H 1.08997 * 109.47019 * 175.00111 * 18 15 13 47 47 H 1.09007 * 109.46898 * 294.99893 * 18 15 13 48 48 H 0.97005 * 120.00213 * 0.02562 * 19 18 15 49 49 H 0.97007 * 119.99615 * 179.97438 * 23 22 20 50 50 H 1.08001 * 119.97289 * 179.70618 * 28 6 5 51 51 H 1.08005 * 120.02266 * 180.27510 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6757 -0.0005 7 6 3.9861 5.0185 -0.0017 8 6 4.2160 5.4725 -1.4446 9 1 4.7683 4.7030 -1.9840 10 6 2.8667 5.7052 -2.1271 11 6 5.0083 6.7545 -1.4475 12 8 5.0750 7.4284 -0.4414 13 7 5.6425 7.1521 -2.5683 14 6 6.4861 8.3497 -2.5469 15 6 5.4882 6.3869 -3.8079 16 1 4.7481 5.6005 -3.6599 17 6 5.0243 7.3194 -4.9287 18 6 6.8301 5.7587 -4.1899 19 7 7.3320 4.9601 -3.0690 20 6 8.5264 4.2995 -3.1797 21 1 9.0981 4.3668 -4.0935 22 6 9.0018 3.5423 -2.1178 23 7 8.3048 3.4599 -1.0043 24 14 10.6307 2.6405 -2.2691 25 1 11.2138 2.8936 -3.6111 26 1 11.5656 3.1286 -1.2236 27 1 10.4079 1.1830 -2.0925 28 6 1.9211 3.6048 0.0062 29 6 1.2916 2.3750 0.0010 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 4.0208 0.3798 -0.0002 34 1 5.1346 2.5750 -0.0011 35 1 4.9446 4.9383 0.5111 36 1 3.3586 5.7464 0.5126 37 1 2.2652 6.3829 -1.5214 38 1 3.0284 6.1444 -3.1116 39 1 2.3452 4.7542 -2.2348 40 1 5.8781 9.2265 -2.7698 41 1 6.9350 8.4602 -1.5598 42 1 7.2728 8.2533 -3.2952 43 1 4.0683 7.7669 -4.6566 44 1 5.7644 8.1057 -5.0768 45 1 4.9091 6.7499 -5.8509 46 1 6.6963 5.1179 -5.0614 47 1 7.5463 6.5463 -4.4244 48 1 6.8184 4.8993 -2.2483 49 1 8.6369 2.9304 -0.2623 50 1 1.3343 4.5114 0.0114 51 1 0.2129 2.3202 0.0018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482368521.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:42 Heat of formation + Delta-G solvation = -60.946366 kcal Electronic energy + Delta-G solvation = -30229.075684 eV Core-core repulsion = 26321.238122 eV Total energy + Delta-G solvation = -3907.837561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.50627 -40.91813 -38.78364 -38.05673 -35.75379 -35.56837 -33.18200 -32.00596 -31.57859 -31.44548 -28.59353 -28.08352 -27.32468 -27.11362 -24.61203 -23.95503 -23.53024 -22.54855 -21.67241 -19.64425 -19.12038 -19.02626 -18.42441 -17.14868 -17.11761 -16.59675 -16.51119 -16.49657 -16.21744 -15.50638 -15.38408 -15.24036 -15.15381 -14.76050 -14.58400 -14.32211 -14.29544 -13.80733 -13.69382 -13.57966 -13.28694 -13.23892 -13.18671 -13.04748 -12.83414 -12.76141 -12.73829 -12.43451 -12.35092 -12.22141 -12.08237 -12.03580 -11.78377 -11.73930 -11.65447 -11.58898 -10.95103 -10.64960 -9.90830 -9.58870 -9.00358 -8.96157 -7.91930 -5.20048 0.42646 0.45806 1.45544 1.46034 1.55456 1.67167 2.11318 2.42298 2.55859 2.81151 3.41278 3.46921 3.78682 3.84322 3.95661 3.97919 4.06635 4.09017 4.18020 4.24408 4.32034 4.38428 4.45017 4.48499 4.49167 4.50910 4.59420 4.67529 4.72080 4.78564 4.81970 4.84188 4.85791 4.89276 4.98550 4.99874 5.00684 5.13599 5.15634 5.18692 5.25656 5.35219 5.37200 5.42442 5.50793 5.65965 5.79233 5.87610 6.28760 6.45166 6.50799 7.22274 7.36527 8.12860 8.35170 9.30330 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008593 B = 0.004254 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3257.538571 B = 6581.154249 C = 8711.285926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.115 3.885 4 C -0.166 4.166 5 C -0.084 4.084 6 C -0.116 4.116 7 C -0.047 4.047 8 C -0.098 4.098 9 H 0.079 0.921 10 C -0.136 4.136 11 C 0.518 3.482 12 O -0.587 6.587 13 N -0.598 5.598 14 C 0.092 3.908 15 C 0.121 3.879 16 H 0.099 0.901 17 C -0.148 4.148 18 C 0.133 3.867 19 N -0.742 5.742 20 C -0.243 4.243 21 H 0.075 0.925 22 C -0.069 4.069 23 N -0.959 5.959 24 Si 0.965 3.035 25 H -0.266 1.266 26 H -0.299 1.299 27 H -0.295 1.295 28 C -0.068 4.068 29 C -0.201 4.201 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.040 0.960 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.042 0.958 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.041 0.959 47 H 0.025 0.975 48 H 0.375 0.625 49 H 0.248 0.752 50 H 0.152 0.848 51 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.876 1.953 -4.518 20.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.254 6.254 3 C 0.070 3.930 4 C -0.185 4.185 5 C -0.102 4.102 6 C -0.116 4.116 7 C -0.085 4.085 8 C -0.119 4.119 9 H 0.097 0.903 10 C -0.193 4.193 11 C 0.308 3.692 12 O -0.468 6.468 13 N -0.329 5.329 14 C -0.050 4.050 15 C 0.018 3.982 16 H 0.117 0.883 17 C -0.206 4.206 18 C 0.006 3.994 19 N -0.386 5.386 20 C -0.375 4.375 21 H 0.093 0.907 22 C -0.262 4.262 23 N -0.610 5.610 24 Si 0.795 3.205 25 H -0.190 1.190 26 H -0.227 1.227 27 H -0.222 1.222 28 C -0.086 4.086 29 C -0.219 4.219 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.124 0.876 35 H 0.059 0.941 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.059 0.941 47 H 0.043 0.957 48 H 0.208 0.792 49 H 0.057 0.943 50 H 0.170 0.830 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -19.595 2.083 -4.136 20.134 hybrid contribution 1.573 -0.698 0.680 1.850 sum -18.022 1.385 -3.455 18.402 Atomic orbital electron populations 1.23359 0.76313 1.05507 1.02471 1.86048 1.23664 1.26865 1.88801 1.19074 0.91852 0.85144 0.96911 1.20444 0.92477 0.98151 1.07410 1.20959 0.99674 0.92135 0.97457 1.19686 0.94401 0.93794 1.03739 1.20181 0.99735 0.93723 0.94840 1.21222 0.98422 0.93742 0.98554 0.90266 1.21872 0.93281 1.03571 1.00576 1.20997 0.79128 0.86970 0.82132 1.90602 1.64339 1.57776 1.34043 1.47863 1.46938 1.27807 1.10307 1.21519 0.94680 0.86887 1.01945 1.21723 0.97398 0.94620 0.84496 0.88303 1.22032 1.02095 0.99403 0.97087 1.21311 0.93782 0.93447 0.90873 1.42531 1.23249 1.57668 1.15169 1.19606 0.97597 1.21380 0.98889 0.90693 1.25448 1.01950 1.02551 0.96251 1.69821 1.40253 1.45922 1.04992 0.85198 0.80091 0.77832 0.77386 1.18994 1.22688 1.22204 1.21073 0.92718 0.98280 0.96505 1.21460 1.01173 0.91210 1.08065 0.86551 0.91485 0.91412 0.86082 0.87606 0.94107 0.89729 0.90924 0.90852 0.90078 0.90764 0.93926 0.90480 0.90774 0.91506 0.89278 0.94143 0.95739 0.79225 0.94342 0.83036 0.82291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -8.28 10.50 -92.44 -0.97 -9.25 16 3 C 0.12 3.12 6.69 22.50 0.15 3.27 16 4 C -0.17 -5.38 9.99 22.37 0.22 -5.16 16 5 C -0.08 -2.98 9.69 22.25 0.22 -2.77 16 6 C -0.12 -3.57 4.72 -19.85 -0.09 -3.67 16 7 C -0.05 -1.60 4.20 29.85 0.13 -1.47 16 8 C -0.10 -3.22 1.75 -11.54 -0.02 -3.24 16 9 H 0.08 3.02 5.92 -2.39 -0.01 3.01 16 10 C -0.14 -3.12 8.11 71.98 0.58 -2.54 16 11 C 0.52 19.56 6.23 87.66 0.55 20.10 16 12 O -0.59 -25.98 15.76 -3.02 -0.05 -26.03 16 13 N -0.60 -20.03 2.34 -822.59 -1.92 -21.95 16 14 C 0.09 2.89 9.25 127.77 1.18 4.07 16 15 C 0.12 3.50 1.97 44.99 0.09 3.59 16 16 H 0.10 2.82 4.49 -2.39 -0.01 2.81 16 17 C -0.15 -2.88 9.10 71.98 0.65 -2.22 16 18 C 0.13 4.93 5.63 86.38 0.49 5.41 16 19 N -0.74 -36.82 5.43 -343.45 -1.87 -38.69 16 20 C -0.24 -13.43 9.99 84.03 0.84 -12.59 16 21 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 22 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 23 N -0.96 -58.93 13.06 21.65 0.28 -58.65 16 24 Si 0.96 46.82 29.55 68.60 2.03 48.84 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 26 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 27 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 28 C -0.07 -1.59 8.15 22.26 0.18 -1.41 16 29 C -0.20 -4.38 9.04 22.37 0.20 -4.17 16 30 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 32 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 33 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 34 H 0.11 4.47 8.06 -2.91 -0.02 4.44 16 35 H 0.04 1.71 8.08 -2.39 -0.02 1.69 16 36 H 0.08 2.64 8.01 -2.39 -0.02 2.62 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.48 6.46 -2.39 -0.02 1.47 16 39 H 0.08 1.69 6.75 -2.39 -0.02 1.67 16 40 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.04 1.57 7.53 -2.39 -0.02 1.55 16 42 H 0.08 2.27 6.76 -2.39 -0.02 2.26 16 43 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 1.25 7.47 -2.39 -0.02 1.23 16 45 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.02 0.91 7.09 -2.38 -0.02 0.89 16 48 H 0.37 19.89 5.52 -92.70 -0.51 19.38 16 49 H 0.25 14.94 8.31 -92.70 -0.77 14.17 16 50 H 0.15 2.65 8.05 -2.91 -0.02 2.63 16 51 H 0.16 2.29 6.30 -2.91 -0.02 2.27 16 Total: -1.00 -74.73 402.63 4.86 -69.87 By element: Atomic # 1 Polarization: 40.39 SS G_CDS: 0.41 Total: 40.80 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 6.94 Total: -4.96 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -3.50 Total: -119.29 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -1.02 Total: -35.27 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Total: -74.73 4.86 -69.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482368521.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.928 kcal (2) G-P(sol) polarization free energy of solvation -74.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds