Wall clock time and date at job start Tue Mar 31 2020 20:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 117.00332 * 2 1 4 4 C 1.38733 * 120.05833 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94304 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05800 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.94298 * 180.02562 * 6 5 4 8 8 C 1.52993 * 109.47541 * 89.99802 * 7 6 5 9 9 H 1.09000 * 109.47165 * 304.99687 * 8 7 6 10 10 C 1.53005 * 109.47196 * 64.99675 * 8 7 6 11 11 C 1.50699 * 109.47375 * 184.99974 * 8 7 6 12 12 O 1.21281 * 119.99763 * 344.73978 * 11 8 7 13 13 N 1.34781 * 120.00345 * 164.74636 * 11 8 7 14 14 C 1.46492 * 120.00074 * 185.68363 * 13 11 8 15 15 C 1.46501 * 119.99594 * 5.68739 * 13 11 8 16 16 H 1.09004 * 109.47558 * 6.28018 * 15 13 11 17 17 C 1.53004 * 109.46734 * 246.28156 * 15 13 11 18 18 C 1.53003 * 109.47128 * 126.28249 * 15 13 11 19 19 N 1.46498 * 109.47192 * 304.99870 * 18 15 13 20 20 C 1.36932 * 120.00005 * 180.02562 * 19 18 15 21 21 H 1.07997 * 119.99929 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99865 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00329 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99781 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47099 * 89.99995 * 24 22 20 26 26 H 1.48500 * 109.47276 * 209.99556 * 24 22 20 27 27 H 1.48500 * 109.47521 * 329.99872 * 24 22 20 28 28 C 1.38264 * 120.10960 * 0.26786 * 6 5 4 29 29 C 1.38145 * 120.05456 * 359.46361 * 28 6 5 30 30 H 1.09001 * 109.47137 * 299.99729 * 1 2 3 31 31 H 1.08995 * 109.46877 * 59.99508 * 1 2 3 32 32 H 1.08997 * 109.47396 * 179.97438 * 1 2 3 33 33 H 1.08005 * 120.02324 * 359.96244 * 4 3 2 34 34 H 1.08007 * 119.96882 * 179.97438 * 5 4 3 35 35 H 1.09005 * 109.47308 * 329.99104 * 7 6 5 36 36 H 1.09005 * 109.46856 * 210.00216 * 7 6 5 37 37 H 1.09000 * 109.47091 * 173.68497 * 10 8 7 38 38 H 1.08993 * 109.46984 * 293.68792 * 10 8 7 39 39 H 1.09005 * 109.47000 * 53.68824 * 10 8 7 40 40 H 1.08997 * 109.47405 * 275.22494 * 14 13 11 41 41 H 1.09004 * 109.46752 * 155.22763 * 14 13 11 42 42 H 1.09002 * 109.47131 * 35.23011 * 14 13 11 43 43 H 1.08997 * 109.47033 * 299.99818 * 17 15 13 44 44 H 1.08998 * 109.47034 * 60.00261 * 17 15 13 45 45 H 1.09004 * 109.46937 * 180.02562 * 17 15 13 46 46 H 1.08995 * 109.46864 * 65.00239 * 18 15 13 47 47 H 1.08999 * 109.46832 * 184.99779 * 18 15 13 48 48 H 0.96998 * 119.99616 * 359.97438 * 19 18 15 49 49 H 0.96997 * 119.99937 * 180.02562 * 23 22 20 50 50 H 1.08000 * 119.96970 * 179.70173 * 28 6 5 51 51 H 1.07999 * 120.02422 * 180.27364 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0005 7 6 3.9862 5.0184 -0.0017 8 6 4.2174 5.4719 -1.4445 9 1 4.7700 4.7021 -1.9832 10 6 2.8685 5.7043 -2.1284 11 6 5.0096 6.7538 -1.4474 12 8 5.1193 7.4011 -0.4277 13 7 5.5961 7.1810 -2.5832 14 6 6.4679 8.3581 -2.5595 15 6 5.3617 6.4683 -3.8415 16 1 4.6073 5.6968 -3.6871 17 6 6.6656 5.8199 -4.3109 18 6 4.8718 7.4553 -4.9031 19 7 3.6903 8.1630 -4.4038 20 6 3.0733 9.1022 -5.1862 21 1 3.4579 9.3215 -6.1713 22 6 1.9541 9.7731 -4.7129 23 7 1.4857 9.5063 -3.5121 24 14 1.1128 11.0549 -5.7800 25 1 0.0652 10.4016 -6.6052 26 1 0.4886 12.0874 -4.9143 27 1 2.1157 11.6946 -6.6689 28 6 1.9212 3.6047 0.0051 29 6 1.2916 2.3751 0.0000 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 4.0209 0.3798 0.0016 34 1 5.1347 2.5749 0.0008 35 1 4.9443 4.9385 0.5120 36 1 3.3584 5.7465 0.5119 37 1 3.0316 6.1335 -3.1169 38 1 2.3427 4.7547 -2.2267 39 1 2.2705 6.3904 -1.5285 40 1 5.8632 9.2601 -2.6519 41 1 7.1717 8.3057 -3.3903 42 1 7.0178 8.3840 -1.6187 43 1 7.4199 6.5914 -4.4654 44 1 7.0146 5.1168 -3.5546 45 1 6.4913 5.2900 -5.2473 46 1 5.6609 8.1747 -5.1219 47 1 4.6130 6.9123 -5.8121 48 1 3.3447 7.9657 -3.5192 49 1 0.7034 9.9749 -3.1816 50 1 1.3344 4.5114 0.0095 51 1 0.2130 2.3202 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482368524.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:51 Heat of formation + Delta-G solvation = -38.981593 kcal Electronic energy + Delta-G solvation = -29832.061853 eV Core-core repulsion = 25925.176755 eV Total energy + Delta-G solvation = -3906.885097 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.40059 -39.84238 -37.89339 -36.62835 -34.44514 -33.85131 -31.46643 -31.15989 -30.48378 -30.01573 -27.83803 -26.69459 -26.16892 -25.67588 -23.07377 -22.68926 -22.58977 -21.20117 -20.51347 -18.47093 -18.24350 -17.15541 -17.02342 -16.32749 -15.90664 -15.56711 -15.27155 -15.08103 -14.65617 -14.43509 -14.21193 -13.83926 -13.69739 -13.66709 -13.42738 -13.22235 -12.99940 -12.65207 -12.44021 -12.31954 -12.22432 -12.00596 -11.90101 -11.78006 -11.72331 -11.40580 -11.35100 -11.16916 -10.93854 -10.88239 -10.78305 -10.71748 -10.68533 -10.43585 -10.04118 -9.71182 -9.24059 -9.03047 -8.89760 -8.19070 -8.12600 -6.93388 -5.76088 -3.05513 1.28239 1.35614 3.07456 3.11498 3.39770 3.43042 3.48098 3.49943 3.71605 4.57028 4.66272 4.68347 4.79182 4.90593 4.92715 5.04490 5.06351 5.16550 5.21353 5.24571 5.33155 5.34993 5.40760 5.47718 5.52673 5.57556 5.62019 5.74753 5.85669 5.89065 5.93325 5.97810 6.04746 6.09231 6.13386 6.19380 6.23726 6.30642 6.32594 6.36267 6.40646 6.50171 6.63786 6.66940 6.70128 6.77439 6.98299 7.26321 7.69154 7.83086 8.41792 8.62459 9.53650 10.10121 10.45374 11.45898 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.003173 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.158168 B = 8823.473605 C =10166.287152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.117 3.883 4 C -0.152 4.152 5 C -0.079 4.079 6 C -0.108 4.108 7 C -0.057 4.057 8 C -0.101 4.101 9 H 0.088 0.912 10 C -0.154 4.154 11 C 0.522 3.478 12 O -0.546 6.546 13 N -0.596 5.596 14 C 0.093 3.907 15 C 0.114 3.886 16 H 0.098 0.902 17 C -0.160 4.160 18 C 0.141 3.859 19 N -0.729 5.729 20 C -0.243 4.243 21 H 0.069 0.931 22 C -0.011 4.011 23 N -0.928 5.928 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.283 1.283 28 C -0.070 4.070 29 C -0.205 4.205 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.023 0.977 47 H 0.030 0.970 48 H 0.387 0.613 49 H 0.255 0.745 50 H 0.129 0.871 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.771 -18.076 5.700 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.235 6.235 3 C 0.072 3.928 4 C -0.170 4.170 5 C -0.097 4.097 6 C -0.109 4.109 7 C -0.095 4.095 8 C -0.123 4.123 9 H 0.106 0.894 10 C -0.211 4.211 11 C 0.310 3.690 12 O -0.423 6.423 13 N -0.329 5.329 14 C -0.050 4.050 15 C 0.010 3.990 16 H 0.116 0.884 17 C -0.219 4.219 18 C 0.012 3.988 19 N -0.375 5.375 20 C -0.374 4.374 21 H 0.087 0.913 22 C -0.207 4.207 23 N -0.576 5.576 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.209 1.209 28 C -0.088 4.088 29 C -0.224 4.224 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.041 0.959 47 H 0.048 0.952 48 H 0.223 0.777 49 H 0.065 0.935 50 H 0.146 0.854 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.877 -17.786 6.106 19.427 hybrid contribution -0.961 0.882 -0.506 1.399 sum 3.916 -16.904 5.601 18.233 Atomic orbital electron populations 1.23034 0.78508 1.03726 1.01485 1.86041 1.21303 1.27190 1.88975 1.19025 0.92388 0.84039 0.97345 1.20366 0.91294 0.98514 1.06863 1.20868 0.99777 0.90966 0.98062 1.19822 0.93579 0.95133 1.02328 1.20365 1.00989 0.92912 0.95253 1.21266 0.98013 0.95102 0.97886 0.89377 1.22040 0.94479 1.02357 1.02216 1.20529 0.78870 0.86795 0.82816 1.90652 1.60977 1.57845 1.32871 1.47695 1.47777 1.29564 1.07816 1.21487 0.93693 0.88492 1.01283 1.21700 0.97412 0.95340 0.84560 0.88425 1.22126 0.97572 1.00750 1.01407 1.21026 0.90823 0.93038 0.93865 1.42389 1.30015 1.45991 1.19087 1.19182 1.07274 1.13250 0.97685 0.91284 1.24731 0.98842 1.00360 0.96776 1.69663 1.25810 1.45116 1.16978 0.86219 0.79493 0.81305 0.79300 1.21771 1.21821 1.20855 1.20974 0.94148 0.97200 0.96492 1.21236 0.99985 0.92342 1.08827 0.92701 0.92556 0.88431 0.85477 0.85446 0.90800 0.89909 0.90134 0.91880 0.91251 0.91917 0.91678 0.91931 0.92170 0.92538 0.91345 0.95914 0.95237 0.77726 0.93526 0.85355 0.85587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.50 10.50 -19.42 -0.20 -3.70 16 3 C 0.12 1.36 6.69 -39.22 -0.26 1.10 16 4 C -0.15 -1.68 9.99 -39.43 -0.39 -2.07 16 5 C -0.08 -0.87 9.69 -39.61 -0.38 -1.25 16 6 C -0.11 -1.32 4.71 -104.60 -0.49 -1.82 16 7 C -0.06 -0.78 4.16 -27.89 -0.12 -0.90 16 8 C -0.10 -1.49 1.85 -91.77 -0.17 -1.66 16 9 H 0.09 1.12 7.34 -51.93 -0.38 0.74 16 10 C -0.15 -2.50 7.93 37.16 0.29 -2.20 16 11 C 0.52 9.39 6.89 -10.98 -0.08 9.32 16 12 O -0.55 -11.58 15.82 5.56 0.09 -11.49 16 13 N -0.60 -10.11 2.20 -173.93 -0.38 -10.49 16 14 C 0.09 1.54 9.31 59.84 0.56 2.10 16 15 C 0.11 1.74 2.00 -67.93 -0.14 1.60 16 16 H 0.10 1.47 4.27 -51.93 -0.22 1.25 16 17 C -0.16 -1.85 9.27 37.16 0.34 -1.51 16 18 C 0.14 2.67 5.44 -4.04 -0.02 2.65 16 19 N -0.73 -17.80 5.15 -59.91 -0.31 -18.11 16 20 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 23 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 24 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 C -0.07 -0.85 8.14 -39.61 -0.32 -1.17 16 29 C -0.21 -2.32 9.04 -39.43 -0.36 -2.67 16 30 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 31 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.08 1.24 8.03 -51.93 -0.42 0.82 16 37 H 0.08 1.49 4.10 -51.93 -0.21 1.28 16 38 H 0.06 0.90 6.70 -51.93 -0.35 0.56 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.06 0.90 6.57 -51.93 -0.34 0.56 16 42 H 0.06 0.99 7.67 -51.93 -0.40 0.60 16 43 H 0.06 0.68 6.96 -51.93 -0.36 0.32 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.02 0.44 7.55 -51.93 -0.39 0.05 16 47 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.39 9.94 5.59 -40.82 -0.23 9.71 16 49 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 50 H 0.13 1.52 8.05 -52.49 -0.42 1.10 16 51 H 0.13 1.18 6.30 -52.49 -0.33 0.85 16 LS Contribution 401.66 15.07 6.05 6.05 Total: -1.00 -33.31 401.66 -8.04 -41.35 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -8.20 Total: 10.65 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -0.79 Total: -4.50 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.03 Total: -55.67 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.12 Total: -15.19 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.31 -8.04 -41.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482368524.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.372 kcal (2) G-P(sol) polarization free energy of solvation -33.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds