Wall clock time and date at job start Tue Mar 31 2020 20:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 117.00332 * 2 1 4 4 C 1.38733 * 120.05833 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94304 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05800 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.94298 * 180.02562 * 6 5 4 8 8 C 1.52993 * 109.47541 * 89.99802 * 7 6 5 9 9 H 1.09000 * 109.47165 * 304.99687 * 8 7 6 10 10 C 1.53005 * 109.47196 * 64.99675 * 8 7 6 11 11 C 1.50699 * 109.47375 * 184.99974 * 8 7 6 12 12 O 1.21281 * 119.99763 * 344.73978 * 11 8 7 13 13 N 1.34781 * 120.00345 * 164.74636 * 11 8 7 14 14 C 1.46492 * 120.00074 * 185.68363 * 13 11 8 15 15 C 1.46501 * 119.99594 * 5.68739 * 13 11 8 16 16 H 1.09004 * 109.47558 * 6.28018 * 15 13 11 17 17 C 1.53004 * 109.46734 * 246.28156 * 15 13 11 18 18 C 1.53003 * 109.47128 * 126.28249 * 15 13 11 19 19 N 1.46498 * 109.47192 * 304.99870 * 18 15 13 20 20 C 1.36932 * 120.00005 * 180.02562 * 19 18 15 21 21 H 1.07997 * 119.99929 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99865 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00329 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99781 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47099 * 89.99995 * 24 22 20 26 26 H 1.48500 * 109.47276 * 209.99556 * 24 22 20 27 27 H 1.48500 * 109.47521 * 329.99872 * 24 22 20 28 28 C 1.38264 * 120.10960 * 0.26786 * 6 5 4 29 29 C 1.38145 * 120.05456 * 359.46361 * 28 6 5 30 30 H 1.09001 * 109.47137 * 299.99729 * 1 2 3 31 31 H 1.08995 * 109.46877 * 59.99508 * 1 2 3 32 32 H 1.08997 * 109.47396 * 179.97438 * 1 2 3 33 33 H 1.08005 * 120.02324 * 359.96244 * 4 3 2 34 34 H 1.08007 * 119.96882 * 179.97438 * 5 4 3 35 35 H 1.09005 * 109.47308 * 329.99104 * 7 6 5 36 36 H 1.09005 * 109.46856 * 210.00216 * 7 6 5 37 37 H 1.09000 * 109.47091 * 173.68497 * 10 8 7 38 38 H 1.08993 * 109.46984 * 293.68792 * 10 8 7 39 39 H 1.09005 * 109.47000 * 53.68824 * 10 8 7 40 40 H 1.08997 * 109.47405 * 275.22494 * 14 13 11 41 41 H 1.09004 * 109.46752 * 155.22763 * 14 13 11 42 42 H 1.09002 * 109.47131 * 35.23011 * 14 13 11 43 43 H 1.08997 * 109.47033 * 299.99818 * 17 15 13 44 44 H 1.08998 * 109.47034 * 60.00261 * 17 15 13 45 45 H 1.09004 * 109.46937 * 180.02562 * 17 15 13 46 46 H 1.08995 * 109.46864 * 65.00239 * 18 15 13 47 47 H 1.08999 * 109.46832 * 184.99779 * 18 15 13 48 48 H 0.96998 * 119.99616 * 359.97438 * 19 18 15 49 49 H 0.96997 * 119.99937 * 180.02562 * 23 22 20 50 50 H 1.08000 * 119.96970 * 179.70173 * 28 6 5 51 51 H 1.07999 * 120.02422 * 180.27364 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0005 7 6 3.9862 5.0184 -0.0017 8 6 4.2174 5.4719 -1.4445 9 1 4.7700 4.7021 -1.9832 10 6 2.8685 5.7043 -2.1284 11 6 5.0096 6.7538 -1.4474 12 8 5.1193 7.4011 -0.4277 13 7 5.5961 7.1810 -2.5832 14 6 6.4679 8.3581 -2.5595 15 6 5.3617 6.4683 -3.8415 16 1 4.6073 5.6968 -3.6871 17 6 6.6656 5.8199 -4.3109 18 6 4.8718 7.4553 -4.9031 19 7 3.6903 8.1630 -4.4038 20 6 3.0733 9.1022 -5.1862 21 1 3.4579 9.3215 -6.1713 22 6 1.9541 9.7731 -4.7129 23 7 1.4857 9.5063 -3.5121 24 14 1.1128 11.0549 -5.7800 25 1 0.0652 10.4016 -6.6052 26 1 0.4886 12.0874 -4.9143 27 1 2.1157 11.6946 -6.6689 28 6 1.9212 3.6047 0.0051 29 6 1.2916 2.3751 0.0000 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 4.0209 0.3798 0.0016 34 1 5.1347 2.5749 0.0008 35 1 4.9443 4.9385 0.5120 36 1 3.3584 5.7465 0.5119 37 1 3.0316 6.1335 -3.1169 38 1 2.3427 4.7547 -2.2267 39 1 2.2705 6.3904 -1.5285 40 1 5.8632 9.2601 -2.6519 41 1 7.1717 8.3057 -3.3903 42 1 7.0178 8.3840 -1.6187 43 1 7.4199 6.5914 -4.4654 44 1 7.0146 5.1168 -3.5546 45 1 6.4913 5.2900 -5.2473 46 1 5.6609 8.1747 -5.1219 47 1 4.6130 6.9123 -5.8121 48 1 3.3447 7.9657 -3.5192 49 1 0.7034 9.9749 -3.1816 50 1 1.3344 4.5114 0.0095 51 1 0.2130 2.3202 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482368524.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:50 Heat of formation + Delta-G solvation = -58.543466 kcal Electronic energy + Delta-G solvation = -29832.910119 eV Core-core repulsion = 25925.176755 eV Total energy + Delta-G solvation = -3907.733364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.51417 -40.91585 -38.79053 -38.08385 -35.73428 -35.58700 -33.18180 -32.00922 -31.57418 -31.48862 -28.61353 -27.98391 -27.41458 -27.13518 -24.59539 -24.06076 -23.53059 -22.44677 -21.61005 -19.88826 -19.06380 -18.95230 -18.42843 -17.15436 -17.05059 -16.61327 -16.51820 -16.46538 -16.20138 -15.48432 -15.43550 -15.34496 -15.09313 -14.80527 -14.60475 -14.31360 -14.20316 -13.99145 -13.67203 -13.48445 -13.34876 -13.25214 -13.11425 -13.05427 -12.80939 -12.77023 -12.76332 -12.45356 -12.38535 -12.24828 -12.13230 -12.00556 -11.74420 -11.70656 -11.68699 -11.57260 -10.93613 -10.64846 -9.90338 -9.59626 -9.00607 -8.95838 -7.92083 -5.20222 0.42929 0.45796 1.46136 1.47470 1.55575 1.65009 2.11326 2.41782 2.56389 2.81332 3.40502 3.46006 3.78638 3.81763 3.94005 3.98193 4.06232 4.09296 4.14738 4.27217 4.31630 4.35030 4.40177 4.47679 4.49623 4.51369 4.52836 4.66759 4.70579 4.77139 4.81466 4.87219 4.87902 4.89807 4.91067 4.98778 5.01732 5.12938 5.15713 5.18881 5.34638 5.35981 5.38794 5.44274 5.50994 5.65417 5.76247 5.85293 6.28852 6.47327 6.47580 7.22221 7.36701 8.14350 8.36574 9.30396 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.003173 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.158168 B = 8823.473605 C =10166.287152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.110 3.890 4 C -0.157 4.157 5 C -0.074 4.074 6 C -0.118 4.118 7 C -0.048 4.048 8 C -0.090 4.090 9 H 0.119 0.881 10 C -0.141 4.141 11 C 0.512 3.488 12 O -0.587 6.587 13 N -0.597 5.597 14 C 0.096 3.904 15 C 0.117 3.883 16 H 0.102 0.898 17 C -0.151 4.151 18 C 0.136 3.864 19 N -0.743 5.743 20 C -0.241 4.241 21 H 0.076 0.924 22 C -0.074 4.074 23 N -0.965 5.965 24 Si 0.969 3.031 25 H -0.286 1.286 26 H -0.301 1.301 27 H -0.271 1.271 28 C -0.083 4.083 29 C -0.210 4.210 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.120 0.880 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.037 0.963 40 H 0.023 0.977 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.026 0.974 47 H 0.042 0.958 48 H 0.378 0.622 49 H 0.248 0.752 50 H 0.121 0.879 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.042 -20.380 4.368 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.065 3.935 4 C -0.175 4.175 5 C -0.092 4.092 6 C -0.118 4.118 7 C -0.086 4.086 8 C -0.111 4.111 9 H 0.136 0.864 10 C -0.198 4.198 11 C 0.302 3.698 12 O -0.467 6.467 13 N -0.328 5.328 14 C -0.047 4.047 15 C 0.014 3.986 16 H 0.120 0.880 17 C -0.209 4.209 18 C 0.008 3.992 19 N -0.387 5.387 20 C -0.373 4.373 21 H 0.094 0.906 22 C -0.267 4.267 23 N -0.615 5.615 24 Si 0.799 3.201 25 H -0.213 1.213 26 H -0.228 1.228 27 H -0.195 1.195 28 C -0.102 4.102 29 C -0.229 4.229 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.138 0.862 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.042 0.958 41 H 0.114 0.886 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.044 0.956 47 H 0.060 0.940 48 H 0.212 0.788 49 H 0.056 0.944 50 H 0.139 0.861 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.184 -20.117 4.713 21.568 hybrid contribution -1.346 1.545 -0.124 2.053 sum 4.838 -18.573 4.589 19.733 Atomic orbital electron populations 1.23300 0.76800 1.05452 1.01995 1.86028 1.23139 1.26827 1.88802 1.19237 0.92909 0.84353 0.96999 1.20638 0.91385 0.99183 1.06307 1.21066 1.00815 0.90288 0.97007 1.19708 0.93596 0.94747 1.03768 1.20222 1.00965 0.93231 0.94202 1.21246 0.96706 0.94188 0.98958 0.86353 1.21886 0.95218 1.02316 1.00406 1.21164 0.78594 0.87568 0.82519 1.90626 1.62430 1.59257 1.34431 1.47859 1.47217 1.29516 1.08223 1.21458 0.93484 0.86945 1.02834 1.21786 0.99832 0.94250 0.82703 0.88015 1.22080 0.95025 1.01061 1.02760 1.21271 0.88904 0.93541 0.95440 1.42612 1.31510 1.46004 1.18567 1.19602 1.06809 1.12910 0.97968 0.90579 1.25508 1.00171 1.02935 0.98072 1.69836 1.26309 1.46578 1.18822 0.85204 0.78543 0.78722 0.77649 1.21323 1.22839 1.19549 1.21021 0.94409 0.97444 0.97277 1.21379 1.00863 0.91966 1.08652 0.92025 0.92196 0.86201 0.83789 0.83266 0.90174 0.92333 0.92199 0.89908 0.94377 0.95828 0.88588 0.91574 0.91637 0.90780 0.89333 0.95633 0.93985 0.78815 0.94368 0.86112 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -6.66 10.50 -92.41 -0.97 -7.63 16 3 C 0.11 2.38 6.69 22.51 0.15 2.53 16 4 C -0.16 -3.12 9.99 22.37 0.22 -2.89 16 5 C -0.07 -1.46 9.69 22.25 0.22 -1.25 16 6 C -0.12 -2.78 4.71 -19.85 -0.09 -2.87 16 7 C -0.05 -1.31 4.16 29.84 0.12 -1.19 16 8 C -0.09 -2.60 1.85 -11.54 -0.02 -2.62 16 9 H 0.12 2.71 7.34 -2.39 -0.02 2.69 16 10 C -0.14 -4.67 7.93 71.98 0.57 -4.09 16 11 C 0.51 18.56 6.89 87.66 0.60 19.17 16 12 O -0.59 -25.73 15.82 -3.03 -0.05 -25.78 16 13 N -0.60 -19.86 2.20 -822.58 -1.81 -21.68 16 14 C 0.10 3.14 9.31 127.77 1.19 4.33 16 15 C 0.12 3.35 2.00 44.99 0.09 3.44 16 16 H 0.10 2.85 4.27 -2.38 -0.01 2.84 16 17 C -0.15 -2.90 9.27 71.98 0.67 -2.23 16 18 C 0.14 4.95 5.44 86.38 0.47 5.42 16 19 N -0.74 -36.49 5.15 -343.46 -1.77 -38.25 16 20 C -0.24 -13.24 9.99 84.03 0.84 -12.40 16 21 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 22 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 23 N -0.96 -59.67 13.06 21.65 0.28 -59.39 16 24 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 27 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 28 C -0.08 -2.01 8.14 22.25 0.18 -1.83 16 29 C -0.21 -4.55 9.04 22.37 0.20 -4.35 16 30 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 31 H 0.06 0.71 7.66 -2.39 -0.02 0.70 16 32 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 35 H 0.08 2.06 8.08 -2.38 -0.02 2.04 16 36 H 0.06 1.86 8.03 -2.38 -0.02 1.84 16 37 H 0.06 2.24 4.10 -2.39 -0.01 2.23 16 38 H 0.08 2.36 6.70 -2.39 -0.02 2.35 16 39 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.10 2.49 6.57 -2.38 -0.02 2.47 16 42 H 0.07 2.10 7.67 -2.39 -0.02 2.09 16 43 H 0.06 1.21 6.96 -2.39 -0.02 1.20 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 46 H 0.03 0.94 7.55 -2.39 -0.02 0.92 16 47 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 48 H 0.38 19.92 5.59 -92.71 -0.52 19.41 16 49 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 50 H 0.12 3.01 8.05 -2.91 -0.02 2.99 16 51 H 0.14 2.50 6.30 -2.91 -0.02 2.48 16 Total: -1.00 -74.02 401.66 5.11 -68.91 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: 0.41 Total: 38.58 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 6.99 Total: -3.30 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -3.30 Total: -119.32 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.02 Total: -33.41 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -74.02 5.11 -68.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482368524.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.366 kcal (2) G-P(sol) polarization free energy of solvation -74.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds