Wall clock time and date at job start Tue Mar 31 2020 20:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35897 * 117.00151 * 2 1 4 4 C 1.38725 * 120.05989 * 180.02562 * 3 2 1 5 5 C 1.38148 * 119.94552 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05526 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.94194 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.47196 * 90.00446 * 7 6 5 9 9 H 1.08998 * 109.46505 * 304.99468 * 8 7 6 10 10 C 1.52997 * 109.47127 * 64.99596 * 8 7 6 11 11 C 1.50697 * 109.47239 * 185.00092 * 8 7 6 12 12 O 1.21283 * 120.00261 * 359.97438 * 11 8 7 13 13 N 1.34777 * 120.00075 * 180.02562 * 11 8 7 14 14 C 1.46498 * 119.99953 * 359.97438 * 13 11 8 15 15 C 1.46500 * 120.00084 * 180.02562 * 13 11 8 16 16 C 1.52997 * 109.47357 * 89.99432 * 15 13 11 17 17 C 1.52997 * 109.47030 * 180.02562 * 16 15 13 18 18 N 1.46505 * 109.47349 * 180.02562 * 17 16 15 19 19 C 1.36928 * 120.00497 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99615 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00354 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99594 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99878 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47036 * 60.00617 * 23 21 19 25 25 H 1.48502 * 109.46902 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47231 * 300.00246 * 23 21 19 27 27 C 1.38258 * 120.11068 * 0.27679 * 6 5 4 28 28 C 1.38149 * 120.05706 * 359.45465 * 27 6 5 29 29 H 1.09002 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47134 * 300.00440 * 1 2 3 31 31 H 1.08994 * 109.47263 * 60.00680 * 1 2 3 32 32 H 1.08005 * 120.02958 * 359.95038 * 4 3 2 33 33 H 1.07998 * 119.97025 * 179.97438 * 5 4 3 34 34 H 1.09007 * 109.47361 * 330.00239 * 7 6 5 35 35 H 1.08996 * 109.47293 * 210.00379 * 7 6 5 36 36 H 1.09002 * 109.47153 * 180.02562 * 10 8 7 37 37 H 1.09001 * 109.46832 * 60.00321 * 10 8 7 38 38 H 1.09004 * 109.47261 * 300.00303 * 10 8 7 39 39 H 1.09001 * 109.47076 * 90.00302 * 14 13 11 40 40 H 1.08996 * 109.47427 * 210.00785 * 14 13 11 41 41 H 1.08999 * 109.47290 * 330.00489 * 14 13 11 42 42 H 1.08995 * 109.46789 * 209.99681 * 15 13 11 43 43 H 1.08999 * 109.46866 * 329.99207 * 15 13 11 44 44 H 1.08995 * 109.47374 * 299.99891 * 16 15 13 45 45 H 1.08999 * 109.47317 * 60.00051 * 16 15 13 46 46 H 1.09002 * 109.47392 * 299.99670 * 17 16 15 47 47 H 1.09002 * 109.47504 * 60.00157 * 17 16 15 48 48 H 0.97003 * 119.99798 * 0.02562 * 18 17 16 49 49 H 0.97004 * 120.00030 * 180.02562 * 22 21 19 50 50 H 1.07999 * 119.97231 * 179.69939 * 27 6 5 51 51 H 1.08001 * 120.03087 * 180.27303 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 3.9859 5.0185 -0.0028 8 6 4.2169 5.4720 -1.4457 9 1 4.7695 4.7023 -1.9844 10 6 2.8680 5.7044 -2.1294 11 6 5.0091 6.7540 -1.4487 12 8 5.3546 7.2558 -0.4000 13 7 5.3328 7.3434 -2.6167 14 6 4.9151 6.7375 -3.8834 15 6 6.1034 8.5893 -2.6196 16 6 7.5979 8.2646 -2.6634 17 6 8.4026 9.5659 -2.6658 18 7 9.8337 9.2550 -2.7084 19 6 10.7545 10.2684 -2.7186 20 1 10.4258 11.2969 -2.6948 21 6 12.1105 9.9738 -2.7583 22 7 12.5110 8.7204 -2.7867 23 14 13.3666 11.3564 -2.7730 24 1 13.2137 12.1771 -1.5448 25 1 14.7350 10.7814 -2.8175 26 1 13.1496 12.2097 -3.9688 27 6 1.9210 3.6048 0.0042 28 6 1.2915 2.3751 -0.0009 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 4.0209 0.3799 -0.0001 33 1 5.1344 2.5751 -0.0011 34 1 4.9441 4.9386 0.5108 35 1 3.3582 5.7467 0.5108 36 1 3.0325 6.0270 -3.1575 37 1 2.3155 6.4742 -1.5906 38 1 2.2950 4.7771 -2.1272 39 1 3.9375 7.1270 -4.1675 40 1 5.6418 6.9792 -4.6590 41 1 4.8550 5.6555 -3.7664 42 1 5.8343 9.1808 -3.4947 43 1 5.8811 9.1561 -1.7156 44 1 7.8670 7.6731 -1.7884 45 1 7.8203 7.6978 -3.5675 46 1 8.1337 10.1578 -3.5407 47 1 8.1803 10.1323 -1.7615 48 1 10.1289 8.3312 -2.7300 49 1 13.4585 8.5145 -2.8141 50 1 1.3341 4.5114 0.0086 51 1 0.2129 2.3201 -0.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498656693.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:47 Heat of formation + Delta-G solvation = -43.141161 kcal Electronic energy + Delta-G solvation = -27968.456575 eV Core-core repulsion = 24061.391105 eV Total energy + Delta-G solvation = -3907.065470 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.67361 -40.09424 -38.14394 -36.19748 -35.10905 -34.57163 -32.23699 -31.41830 -30.76385 -29.54242 -27.98933 -27.16025 -26.37793 -25.52433 -23.51996 -22.93677 -22.33962 -21.11298 -20.70190 -19.01982 -18.50257 -17.29301 -16.99310 -16.58874 -16.29207 -16.11078 -15.49376 -15.45271 -14.73916 -14.70732 -14.44744 -14.28909 -14.08779 -13.97221 -13.73583 -13.28361 -13.22850 -13.03656 -12.85767 -12.72718 -12.50455 -12.32364 -12.27616 -11.90503 -11.84726 -11.60415 -11.46214 -11.29567 -11.08997 -10.99599 -10.88147 -10.80132 -10.70466 -10.35263 -10.07257 -9.70665 -9.60887 -9.29810 -8.81828 -8.62818 -8.38928 -6.86869 -5.71317 -2.99874 1.02309 1.08657 2.65170 2.89315 2.97934 3.43818 3.47855 3.51586 3.53139 4.28154 4.41485 4.52847 4.63980 4.64128 4.65758 4.70343 4.75211 4.82570 4.93746 5.01448 5.05703 5.09507 5.14580 5.17570 5.32787 5.33817 5.39835 5.47086 5.49135 5.58864 5.59950 5.61476 5.73994 5.75280 5.91192 5.92121 5.96959 6.01377 6.03774 6.13578 6.34655 6.39055 6.43464 6.45126 6.57787 6.91036 6.93639 7.02855 7.37707 7.73975 8.19780 8.47639 9.58321 10.17290 10.52013 11.51727 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022867 B = 0.001724 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.194008 B =16232.764975 C =16881.767642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.119 3.881 4 C -0.149 4.149 5 C -0.075 4.075 6 C -0.113 4.113 7 C -0.059 4.059 8 C -0.103 4.103 9 H 0.097 0.903 10 C -0.158 4.158 11 C 0.515 3.485 12 O -0.534 6.534 13 N -0.614 5.614 14 C 0.075 3.925 15 C 0.118 3.882 16 C -0.138 4.138 17 C 0.156 3.844 18 N -0.733 5.733 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.909 3.091 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.074 4.074 28 C -0.208 4.208 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.018 0.982 47 H 0.020 0.980 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.125 0.875 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.885 -16.504 1.427 34.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.075 3.925 4 C -0.167 4.167 5 C -0.093 4.093 6 C -0.113 4.113 7 C -0.096 4.096 8 C -0.124 4.124 9 H 0.115 0.885 10 C -0.215 4.215 11 C 0.303 3.697 12 O -0.410 6.410 13 N -0.347 5.347 14 C -0.068 4.068 15 C -0.004 4.004 16 C -0.177 4.177 17 C 0.028 3.972 18 N -0.377 5.377 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.093 4.093 28 C -0.226 4.226 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.035 0.965 47 H 0.038 0.962 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.143 0.857 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -29.548 -16.255 1.980 33.782 hybrid contribution 0.610 0.472 -0.174 0.791 sum -28.937 -15.783 1.806 33.011 Atomic orbital electron populations 1.23043 0.78445 1.03904 1.01339 1.86069 1.21344 1.27101 1.88827 1.19048 0.92410 0.84098 0.96988 1.20442 0.91342 0.98732 1.06220 1.20951 1.00127 0.90921 0.97341 1.19806 0.93503 0.95163 1.02829 1.20353 1.01601 0.92789 0.94877 1.21249 0.97272 0.95509 0.98401 0.88462 1.22116 0.95415 1.02716 1.01272 1.20634 0.79640 0.86066 0.83398 1.90724 1.54308 1.64920 1.31076 1.47879 1.54901 1.25877 1.06081 1.21967 1.00154 0.98618 0.86053 1.21489 0.91037 0.84797 1.03106 1.22045 0.93552 0.99795 1.02320 1.20543 0.85426 0.93477 0.97743 1.42342 0.99274 1.06694 1.89407 1.19213 0.87034 0.88274 1.42557 0.91207 1.24751 0.96977 0.96273 1.03114 1.69657 1.14629 1.16251 1.57805 0.86243 0.80802 0.81167 0.77838 1.21253 1.21689 1.21291 1.20864 0.93984 0.96947 0.97455 1.21214 0.99906 0.92365 1.09142 0.88293 0.92680 0.92658 0.85218 0.85110 0.89901 0.90358 0.91044 0.92213 0.91271 0.92335 0.90757 0.90912 0.90600 0.89807 0.91617 0.92060 0.96450 0.96228 0.78336 0.93510 0.85746 0.85621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.74 10.50 -19.42 -0.20 -2.94 16 3 C 0.12 1.07 6.69 -39.22 -0.26 0.81 16 4 C -0.15 -1.33 9.99 -39.43 -0.39 -1.72 16 5 C -0.08 -0.66 9.69 -39.60 -0.38 -1.04 16 6 C -0.11 -0.99 4.71 -104.61 -0.49 -1.48 16 7 C -0.06 -0.57 4.19 -27.88 -0.12 -0.69 16 8 C -0.10 -0.96 1.91 -91.77 -0.18 -1.14 16 9 H 0.10 0.83 7.40 -51.93 -0.38 0.45 16 10 C -0.16 -1.13 8.41 37.16 0.31 -0.82 16 11 C 0.51 6.77 7.08 -10.99 -0.08 6.69 16 12 O -0.53 -9.26 15.50 5.55 0.09 -9.17 16 13 N -0.61 -7.35 2.87 -181.58 -0.52 -7.88 16 14 C 0.08 0.61 8.80 59.85 0.53 1.14 16 15 C 0.12 1.64 5.41 -4.04 -0.02 1.62 16 16 C -0.14 -2.40 5.65 -26.73 -0.15 -2.55 16 17 C 0.16 3.31 6.26 -4.04 -0.03 3.28 16 18 N -0.73 -19.63 5.60 -59.90 -0.34 -19.97 16 19 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 20 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 22 N -0.93 -29.14 13.06 55.49 0.72 -28.42 16 23 Si 0.91 22.98 29.55 -169.99 -5.02 17.96 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 C -0.07 -0.58 7.97 -39.61 -0.32 -0.90 16 28 C -0.21 -1.60 9.04 -39.43 -0.36 -1.96 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.21 7.66 -51.93 -0.40 -0.19 16 31 H 0.05 0.21 7.66 -51.93 -0.40 -0.19 16 32 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.08 0.92 7.90 -51.93 -0.41 0.51 16 35 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.07 0.44 4.53 -51.93 -0.24 0.20 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.45 6.28 -51.93 -0.33 0.12 16 39 H 0.06 0.37 6.95 -51.93 -0.36 0.01 16 40 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 41 H 0.07 0.49 6.01 -51.93 -0.31 0.18 16 42 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 43 H 0.08 1.29 7.42 -51.93 -0.39 0.90 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.38 10.77 7.67 -40.82 -0.31 10.46 16 49 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 50 H 0.12 0.79 8.05 -52.49 -0.42 0.37 16 51 H 0.13 0.71 6.30 -52.49 -0.33 0.38 16 LS Contribution 408.65 15.07 6.16 6.16 Total: -1.00 -35.58 408.65 -8.77 -44.35 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -8.46 Total: 5.24 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -1.19 Total: -5.33 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.13 Total: -56.26 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.12 Total: -12.12 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.58 -8.77 -44.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498656693.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.208 kcal (2) G-P(sol) polarization free energy of solvation -35.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds