Wall clock time and date at job start Tue Mar 31 2020 20:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35897 * 117.00151 * 2 1 4 4 C 1.38725 * 120.05989 * 180.02562 * 3 2 1 5 5 C 1.38148 * 119.94552 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05526 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.94194 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.47196 * 90.00446 * 7 6 5 9 9 H 1.08998 * 109.46505 * 304.99468 * 8 7 6 10 10 C 1.52997 * 109.47127 * 64.99596 * 8 7 6 11 11 C 1.50697 * 109.47239 * 185.00092 * 8 7 6 12 12 O 1.21283 * 120.00261 * 359.97438 * 11 8 7 13 13 N 1.34777 * 120.00075 * 180.02562 * 11 8 7 14 14 C 1.46498 * 119.99953 * 359.97438 * 13 11 8 15 15 C 1.46500 * 120.00084 * 180.02562 * 13 11 8 16 16 C 1.52997 * 109.47357 * 89.99432 * 15 13 11 17 17 C 1.52997 * 109.47030 * 180.02562 * 16 15 13 18 18 N 1.46505 * 109.47349 * 180.02562 * 17 16 15 19 19 C 1.36928 * 120.00497 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99615 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00354 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99594 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99878 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47036 * 60.00617 * 23 21 19 25 25 H 1.48502 * 109.46902 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47231 * 300.00246 * 23 21 19 27 27 C 1.38258 * 120.11068 * 0.27679 * 6 5 4 28 28 C 1.38149 * 120.05706 * 359.45465 * 27 6 5 29 29 H 1.09002 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47134 * 300.00440 * 1 2 3 31 31 H 1.08994 * 109.47263 * 60.00680 * 1 2 3 32 32 H 1.08005 * 120.02958 * 359.95038 * 4 3 2 33 33 H 1.07998 * 119.97025 * 179.97438 * 5 4 3 34 34 H 1.09007 * 109.47361 * 330.00239 * 7 6 5 35 35 H 1.08996 * 109.47293 * 210.00379 * 7 6 5 36 36 H 1.09002 * 109.47153 * 180.02562 * 10 8 7 37 37 H 1.09001 * 109.46832 * 60.00321 * 10 8 7 38 38 H 1.09004 * 109.47261 * 300.00303 * 10 8 7 39 39 H 1.09001 * 109.47076 * 90.00302 * 14 13 11 40 40 H 1.08996 * 109.47427 * 210.00785 * 14 13 11 41 41 H 1.08999 * 109.47290 * 330.00489 * 14 13 11 42 42 H 1.08995 * 109.46789 * 209.99681 * 15 13 11 43 43 H 1.08999 * 109.46866 * 329.99207 * 15 13 11 44 44 H 1.08995 * 109.47374 * 299.99891 * 16 15 13 45 45 H 1.08999 * 109.47317 * 60.00051 * 16 15 13 46 46 H 1.09002 * 109.47392 * 299.99670 * 17 16 15 47 47 H 1.09002 * 109.47504 * 60.00157 * 17 16 15 48 48 H 0.97003 * 119.99798 * 0.02562 * 18 17 16 49 49 H 0.97004 * 120.00030 * 180.02562 * 22 21 19 50 50 H 1.07999 * 119.97231 * 179.69939 * 27 6 5 51 51 H 1.08001 * 120.03087 * 180.27303 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 3.9859 5.0185 -0.0028 8 6 4.2169 5.4720 -1.4457 9 1 4.7695 4.7023 -1.9844 10 6 2.8680 5.7044 -2.1294 11 6 5.0091 6.7540 -1.4487 12 8 5.3546 7.2558 -0.4000 13 7 5.3328 7.3434 -2.6167 14 6 4.9151 6.7375 -3.8834 15 6 6.1034 8.5893 -2.6196 16 6 7.5979 8.2646 -2.6634 17 6 8.4026 9.5659 -2.6658 18 7 9.8337 9.2550 -2.7084 19 6 10.7545 10.2684 -2.7186 20 1 10.4258 11.2969 -2.6948 21 6 12.1105 9.9738 -2.7583 22 7 12.5110 8.7204 -2.7867 23 14 13.3666 11.3564 -2.7730 24 1 13.2137 12.1771 -1.5448 25 1 14.7350 10.7814 -2.8175 26 1 13.1496 12.2097 -3.9688 27 6 1.9210 3.6048 0.0042 28 6 1.2915 2.3751 -0.0009 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 4.0209 0.3799 -0.0001 33 1 5.1344 2.5751 -0.0011 34 1 4.9441 4.9386 0.5108 35 1 3.3582 5.7467 0.5108 36 1 3.0325 6.0270 -3.1575 37 1 2.3155 6.4742 -1.5906 38 1 2.2950 4.7771 -2.1272 39 1 3.9375 7.1270 -4.1675 40 1 5.6418 6.9792 -4.6590 41 1 4.8550 5.6555 -3.7664 42 1 5.8343 9.1808 -3.4947 43 1 5.8811 9.1561 -1.7156 44 1 7.8670 7.6731 -1.7884 45 1 7.8203 7.6978 -3.5675 46 1 8.1337 10.1578 -3.5407 47 1 8.1803 10.1323 -1.7615 48 1 10.1289 8.3312 -2.7300 49 1 13.4585 8.5145 -2.8141 50 1 1.3341 4.5114 0.0086 51 1 0.2129 2.3201 -0.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498656693.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:45 Heat of formation + Delta-G solvation = -65.174049 kcal Electronic energy + Delta-G solvation = -27969.411992 eV Core-core repulsion = 24061.391105 eV Total energy + Delta-G solvation = -3908.020887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.44642 -40.89252 -38.79123 -37.55391 -36.45599 -35.66180 -33.98645 -32.04981 -31.90322 -30.87398 -28.51263 -27.98643 -27.21780 -26.82873 -25.06254 -23.58632 -23.49013 -22.49251 -21.62931 -19.95395 -19.16745 -19.05961 -18.17691 -17.35518 -17.17258 -16.64061 -16.59906 -16.38121 -16.24204 -15.80310 -15.47174 -15.39936 -15.18467 -14.93150 -14.63032 -14.59477 -14.32971 -14.02204 -13.65923 -13.57348 -13.46994 -13.30634 -13.03890 -12.87974 -12.78004 -12.74756 -12.70880 -12.43601 -12.31912 -12.09409 -12.05184 -11.98711 -11.82929 -11.80667 -11.67998 -11.62020 -10.94947 -10.67715 -9.92366 -9.64988 -9.04168 -9.02247 -7.97171 -5.27434 0.40329 0.44044 1.45947 1.50330 1.56389 1.64322 2.04460 2.41332 2.55357 2.79325 3.35997 3.47082 3.82337 3.86630 3.93038 3.95660 3.99909 4.06279 4.19330 4.24140 4.30249 4.32915 4.41476 4.44357 4.49264 4.51943 4.52463 4.62450 4.68779 4.69894 4.75255 4.76432 4.82116 4.84545 4.88912 4.96828 5.02461 5.13513 5.19181 5.28415 5.29330 5.34269 5.34762 5.41739 5.46384 5.56812 5.73241 5.84179 6.24477 6.42764 6.47802 7.19769 7.30055 8.05217 8.29012 9.26428 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022867 B = 0.001724 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.194008 B =16232.764975 C =16881.767642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.110 3.890 4 C -0.163 4.163 5 C -0.084 4.084 6 C -0.119 4.119 7 C -0.053 4.053 8 C -0.094 4.094 9 H 0.109 0.891 10 C -0.151 4.151 11 C 0.507 3.493 12 O -0.586 6.586 13 N -0.613 5.613 14 C 0.066 3.934 15 C 0.126 3.874 16 C -0.120 4.120 17 C 0.154 3.846 18 N -0.749 5.749 19 C -0.253 4.253 20 H 0.077 0.923 21 C -0.077 4.077 22 N -0.971 5.971 23 Si 0.980 3.020 24 H -0.279 1.279 25 H -0.293 1.293 26 H -0.273 1.273 27 C -0.073 4.073 28 C -0.206 4.206 29 H 0.115 0.885 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.065 0.935 44 H 0.035 0.965 45 H 0.067 0.933 46 H 0.034 0.966 47 H 0.013 0.987 48 H 0.372 0.628 49 H 0.252 0.748 50 H 0.141 0.859 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.140 -16.315 -0.021 36.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.065 3.935 4 C -0.182 4.182 5 C -0.102 4.102 6 C -0.119 4.119 7 C -0.091 4.091 8 C -0.115 4.115 9 H 0.127 0.873 10 C -0.208 4.208 11 C 0.296 3.704 12 O -0.466 6.466 13 N -0.345 5.345 14 C -0.075 4.075 15 C 0.003 3.997 16 C -0.160 4.160 17 C 0.028 3.972 18 N -0.392 5.392 19 C -0.384 4.384 20 H 0.095 0.905 21 C -0.269 4.269 22 N -0.622 5.622 23 Si 0.808 3.192 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.199 1.199 27 C -0.091 4.091 28 C -0.225 4.225 29 H 0.134 0.866 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.084 0.916 44 H 0.054 0.946 45 H 0.086 0.914 46 H 0.052 0.948 47 H 0.031 0.969 48 H 0.203 0.797 49 H 0.061 0.939 50 H 0.159 0.841 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -31.863 -16.061 0.495 35.686 hybrid contribution 1.228 0.369 0.288 1.314 sum -30.636 -15.692 0.784 34.430 Atomic orbital electron populations 1.23321 0.76531 1.05438 1.02276 1.86045 1.23425 1.27097 1.88773 1.19234 0.92574 0.84784 0.96949 1.20576 0.91920 0.98876 1.06793 1.21028 1.00404 0.91092 0.97629 1.19725 0.94054 0.94324 1.03790 1.20233 1.00409 0.93380 0.95032 1.21245 0.98218 0.93497 0.98557 0.87342 1.22099 0.93721 1.03298 1.01699 1.21370 0.79260 0.86827 0.82905 1.90698 1.56446 1.66492 1.33008 1.47974 1.53921 1.25192 1.07369 1.22288 1.01543 0.99614 0.84049 1.21294 0.88816 0.86006 1.03617 1.21849 0.95560 0.97412 1.01130 1.20709 0.83180 0.95544 0.97810 1.42594 1.01337 1.05753 1.89472 1.19664 0.87923 0.89152 1.41695 0.90463 1.25663 0.99072 0.98816 1.03394 1.69828 1.14691 1.18404 1.59231 0.85128 0.77653 0.78160 0.78307 1.20467 1.21946 1.19917 1.21050 0.93573 0.97783 0.96703 1.21452 1.01047 0.91723 1.08235 0.86637 0.91821 0.91540 0.84937 0.84957 0.92219 0.90996 0.89484 0.92461 0.90099 0.89675 0.90338 0.89278 0.87591 0.91606 0.94588 0.91438 0.94794 0.96917 0.79678 0.93918 0.84080 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -5.43 10.50 -92.40 -0.97 -6.40 16 3 C 0.11 1.85 6.69 22.51 0.15 2.00 16 4 C -0.16 -2.88 9.99 22.36 0.22 -2.66 16 5 C -0.08 -1.46 9.69 22.26 0.22 -1.25 16 6 C -0.12 -2.01 4.71 -19.85 -0.09 -2.10 16 7 C -0.05 -1.04 4.19 29.85 0.12 -0.91 16 8 C -0.09 -1.67 1.91 -11.54 -0.02 -1.69 16 9 H 0.11 1.70 7.40 -2.39 -0.02 1.68 16 10 C -0.15 -1.77 8.41 71.98 0.61 -1.16 16 11 C 0.51 13.25 7.08 87.66 0.62 13.87 16 12 O -0.59 -21.19 15.50 -3.04 -0.05 -21.24 16 13 N -0.61 -13.86 2.87 -846.78 -2.43 -16.30 16 14 C 0.07 0.87 8.80 127.77 1.12 2.00 16 15 C 0.13 3.39 5.41 86.38 0.47 3.86 16 16 C -0.12 -4.19 5.65 30.59 0.17 -4.02 16 17 C 0.15 6.55 6.26 86.38 0.54 7.09 16 18 N -0.75 -40.69 5.60 -343.44 -1.92 -42.62 16 19 C -0.25 -14.81 9.99 84.04 0.84 -13.97 16 20 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 21 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 22 N -0.97 -61.50 13.06 21.65 0.28 -61.22 16 23 Si 0.98 47.33 29.55 68.60 2.03 49.35 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 26 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 27 C -0.07 -1.02 7.97 22.25 0.18 -0.84 16 28 C -0.21 -2.78 9.04 22.37 0.20 -2.58 16 29 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.36 7.66 -2.39 -0.02 0.34 16 31 H 0.07 0.34 7.66 -2.39 -0.02 0.32 16 32 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 33 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 34 H 0.06 1.43 7.90 -2.38 -0.02 1.41 16 35 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 36 H 0.09 0.75 4.53 -2.39 -0.01 0.74 16 37 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.80 6.28 -2.38 -0.01 0.78 16 39 H 0.08 0.73 6.95 -2.39 -0.02 0.71 16 40 H 0.08 1.02 8.07 -2.39 -0.02 1.00 16 41 H 0.09 0.91 6.01 -2.39 -0.01 0.89 16 42 H 0.11 2.23 8.07 -2.39 -0.02 2.21 16 43 H 0.07 2.03 7.42 -2.39 -0.02 2.02 16 44 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.37 21.49 7.67 -92.71 -0.71 20.78 16 49 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 50 H 0.14 1.46 8.05 -2.91 -0.02 1.44 16 51 H 0.15 1.25 6.30 -2.91 -0.02 1.23 16 Total: -1.00 -78.57 408.65 4.07 -74.50 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.21 Total: 29.18 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 6.93 Total: -5.26 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -4.07 Total: -120.13 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -1.02 Total: -27.64 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.35 kcal Total: -78.57 4.07 -74.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498656693.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.323 kcal (2) G-P(sol) polarization free energy of solvation -78.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds