Wall clock time and date at job start Tue Mar 31 2020 20:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 116.99972 * 2 1 4 4 C 1.38725 * 120.05679 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94524 * 180.02562 * 4 3 2 6 6 C 1.38262 * 120.05514 * 0.27139 * 5 4 3 7 7 C 1.50704 * 119.94612 * 179.70531 * 6 5 4 8 8 C 1.52998 * 109.47264 * 89.99739 * 7 6 5 9 9 H 1.09007 * 109.46925 * 55.00476 * 8 7 6 10 10 C 1.53001 * 109.47178 * 295.00219 * 8 7 6 11 11 C 1.50700 * 109.47311 * 175.00057 * 8 7 6 12 12 O 1.21283 * 119.99728 * 6.77710 * 11 8 7 13 13 N 1.34773 * 119.99901 * 186.77596 * 11 8 7 14 14 C 1.46500 * 120.00366 * 4.68735 * 13 11 8 15 15 C 1.46499 * 119.99526 * 184.68658 * 13 11 8 16 16 C 1.52999 * 109.47197 * 90.00175 * 15 13 11 17 17 H 1.09003 * 109.47363 * 294.99604 * 16 15 13 18 18 C 1.53001 * 109.47481 * 174.99823 * 16 15 13 19 19 N 1.46504 * 109.47417 * 54.99794 * 16 15 13 20 20 C 1.36935 * 120.00175 * 205.00239 * 19 16 15 21 21 H 1.08004 * 120.00122 * 359.97438 * 20 19 16 22 22 C 1.38810 * 119.99854 * 179.97438 * 20 19 16 23 23 N 1.31618 * 120.00100 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00074 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47150 * 59.99369 * 24 22 20 26 26 H 1.48493 * 109.47594 * 179.97438 * 24 22 20 27 27 H 1.48508 * 109.46864 * 299.99863 * 24 22 20 28 28 C 1.38269 * 120.11367 * 359.44750 * 6 5 4 29 29 C 1.38148 * 120.05188 * 0.55680 * 28 6 5 30 30 H 1.09002 * 109.47020 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46912 * 299.99842 * 1 2 3 32 32 H 1.08997 * 109.47744 * 59.99716 * 1 2 3 33 33 H 1.08002 * 120.03191 * 359.97438 * 4 3 2 34 34 H 1.08004 * 119.97172 * 180.02562 * 5 4 3 35 35 H 1.08996 * 109.47431 * 210.00077 * 7 6 5 36 36 H 1.09005 * 109.46767 * 330.00247 * 7 6 5 37 37 H 1.09005 * 109.46971 * 69.37923 * 10 8 7 38 38 H 1.08998 * 109.46954 * 189.37259 * 10 8 7 39 39 H 1.08998 * 109.47329 * 309.37738 * 10 8 7 40 40 H 1.08996 * 109.47299 * 84.65580 * 14 13 11 41 41 H 1.08997 * 109.46746 * 204.65550 * 14 13 11 42 42 H 1.08993 * 109.46943 * 324.65511 * 14 13 11 43 43 H 1.09004 * 109.47385 * 209.99859 * 15 13 11 44 44 H 1.08999 * 109.47592 * 330.00336 * 15 13 11 45 45 H 1.09003 * 109.47257 * 59.99348 * 18 16 15 46 46 H 1.08994 * 109.47422 * 179.97438 * 18 16 15 47 47 H 1.09004 * 109.47372 * 300.00087 * 18 16 15 48 48 H 0.97005 * 119.99301 * 24.99884 * 19 16 15 49 49 H 0.97006 * 119.99932 * 179.97438 * 23 22 20 50 50 H 1.07997 * 119.97639 * 180.25494 * 28 6 5 51 51 H 1.07994 * 120.02994 * 179.74480 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3019 3.6758 0.0067 7 6 3.9860 5.0186 0.0140 8 6 4.2171 5.4810 -1.4260 9 1 3.2695 5.4790 -1.9647 10 6 5.1980 4.5307 -2.1156 11 6 4.7886 6.8755 -1.4202 12 8 5.1059 7.3964 -0.3719 13 7 4.9470 7.5436 -2.5799 14 6 4.4697 6.9568 -3.8345 15 6 5.5965 8.8567 -2.5857 16 6 7.1039 8.6792 -2.7784 17 1 7.5210 8.1552 -1.9184 18 6 7.7665 10.0521 -2.9094 19 7 7.3525 7.8991 -3.9933 20 6 8.5119 7.1817 -4.1210 21 1 9.2432 7.1912 -3.3263 22 6 8.7471 6.4421 -5.2719 23 7 7.8556 6.4300 -6.2401 24 14 10.3283 5.4628 -5.4459 25 1 10.4134 4.4617 -4.3524 26 1 10.3369 4.7652 -6.7568 27 1 11.4915 6.3826 -5.3665 28 6 1.9210 3.6048 0.0014 29 6 1.2914 2.3751 0.0010 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 4.0209 0.3800 -0.0005 34 1 5.1345 2.5751 -0.0008 35 1 3.3582 5.7434 0.5321 36 1 4.9441 4.9353 0.5271 37 1 4.7196 3.5634 -2.2692 38 1 5.4915 4.9478 -3.0789 39 1 6.0816 4.4038 -1.4902 40 1 3.4116 7.1845 -3.9627 41 1 5.0347 7.3734 -4.6684 42 1 4.6080 5.8761 -3.8058 43 1 5.1943 9.4575 -3.4015 44 1 5.4083 9.3595 -1.6372 45 1 7.5816 10.6326 -2.0056 46 1 8.8405 9.9257 -3.0462 47 1 7.3496 10.5762 -3.7694 48 1 6.6958 7.8908 -4.7071 49 1 8.0202 5.9135 -7.0446 50 1 1.3341 4.5114 0.0025 51 1 0.2129 2.3202 0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507160685.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:51 Heat of formation + Delta-G solvation = -36.463401 kcal Electronic energy + Delta-G solvation = -29467.443687 eV Core-core repulsion = 25560.667786 eV Total energy + Delta-G solvation = -3906.775900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.41853 -39.75181 -37.94068 -36.33558 -34.62538 -34.00052 -32.02524 -31.28319 -30.29329 -28.78578 -27.92591 -26.78193 -26.10038 -25.68653 -23.74086 -23.00393 -22.33191 -20.95549 -20.00179 -18.51516 -18.30495 -17.28291 -16.83949 -16.33869 -15.97376 -15.75585 -15.26923 -15.22047 -14.56324 -14.51865 -14.30029 -13.91184 -13.80045 -13.63121 -13.49426 -13.12414 -12.90260 -12.39648 -12.32009 -12.24812 -12.12691 -12.06771 -11.89330 -11.76093 -11.46303 -11.33284 -11.27029 -11.07009 -11.00629 -10.84580 -10.77956 -10.69021 -10.58938 -10.32180 -10.05660 -9.63396 -9.26187 -9.09381 -8.90868 -8.18636 -8.07620 -6.93987 -5.77542 -3.03951 1.22764 1.29536 3.04295 3.06305 3.43298 3.46146 3.48492 3.49691 3.68268 4.59626 4.59911 4.67568 4.72246 4.83235 4.84972 4.99908 5.13227 5.15174 5.19257 5.27935 5.35139 5.46733 5.52327 5.55277 5.58955 5.63826 5.69568 5.79047 5.88695 5.92737 5.97933 6.00397 6.07062 6.15940 6.18328 6.22983 6.26268 6.29594 6.32180 6.38347 6.59848 6.65306 6.66912 6.72985 6.86121 6.90492 7.19309 7.21122 7.71255 7.86227 8.42324 8.61338 9.53418 10.09746 10.45875 11.45317 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012679 B = 0.002897 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.879537 B = 9662.214816 C =11042.132014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.117 3.883 4 C -0.149 4.149 5 C -0.072 4.072 6 C -0.109 4.109 7 C -0.057 4.057 8 C -0.100 4.100 9 H 0.090 0.910 10 C -0.153 4.153 11 C 0.520 3.480 12 O -0.554 6.554 13 N -0.593 5.593 14 C 0.070 3.930 15 C 0.109 3.891 16 C 0.155 3.845 17 H 0.050 0.950 18 C -0.162 4.162 19 N -0.719 5.719 20 C -0.229 4.229 21 H 0.066 0.934 22 C -0.013 4.013 23 N -0.936 5.936 24 Si 0.902 3.098 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.288 1.288 28 C -0.078 4.078 29 C -0.207 4.207 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.042 0.958 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.037 0.963 46 H 0.055 0.945 47 H 0.046 0.954 48 H 0.381 0.619 49 H 0.254 0.746 50 H 0.124 0.876 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.434 -7.040 10.610 20.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.072 3.928 4 C -0.168 4.168 5 C -0.090 4.090 6 C -0.109 4.109 7 C -0.094 4.094 8 C -0.121 4.121 9 H 0.108 0.892 10 C -0.210 4.210 11 C 0.308 3.692 12 O -0.433 6.433 13 N -0.324 5.324 14 C -0.073 4.073 15 C -0.015 4.015 16 C 0.044 3.956 17 H 0.068 0.932 18 C -0.223 4.223 19 N -0.362 5.362 20 C -0.360 4.360 21 H 0.084 0.916 22 C -0.208 4.208 23 N -0.585 5.585 24 Si 0.734 3.266 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.215 1.215 28 C -0.096 4.096 29 C -0.226 4.226 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.056 0.944 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.216 0.784 49 H 0.064 0.936 50 H 0.142 0.858 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.036 -7.044 11.149 20.763 hybrid contribution 0.472 -0.438 -0.657 0.920 sum -15.564 -7.482 10.492 20.206 Atomic orbital electron populations 1.23026 0.78598 1.03761 1.01308 1.86061 1.21226 1.27169 1.88940 1.19029 0.92402 0.84030 0.97313 1.20435 0.91305 0.98717 1.06343 1.20969 1.00151 0.90862 0.97025 1.19841 0.93407 0.95359 1.02285 1.20359 1.01266 0.92469 0.95339 1.21222 1.00461 0.92719 0.97737 0.89227 1.22031 0.98416 0.98529 1.02062 1.20495 0.78136 0.87235 0.83302 1.90634 1.52081 1.69452 1.31149 1.47557 1.58078 1.19563 1.07186 1.22148 0.97818 1.00686 0.86651 1.21833 0.94008 0.83586 1.02025 1.20653 0.91684 0.91744 0.91503 0.93200 1.22371 1.01850 0.98589 0.99470 1.42445 1.21935 1.55444 1.16385 1.19168 0.95834 1.20322 1.00701 0.91553 1.24638 0.98253 1.01128 0.96831 1.69615 1.35106 1.46014 1.07777 0.86333 0.83514 0.80018 0.76734 1.21399 1.21785 1.21465 1.20848 0.94040 0.96949 0.97767 1.21181 0.99797 0.92373 1.09216 0.88402 0.92773 0.92668 0.85310 0.85090 0.90614 0.90183 0.91823 0.89796 0.92012 0.93920 0.89347 0.89985 0.91168 0.90226 0.94358 0.92617 0.93509 0.78381 0.93602 0.85844 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.37 10.50 -19.42 -0.20 -3.57 16 3 C 0.12 1.31 6.69 -39.22 -0.26 1.05 16 4 C -0.15 -1.68 9.99 -39.44 -0.39 -2.08 16 5 C -0.07 -0.82 8.21 -39.61 -0.33 -1.14 16 6 C -0.11 -1.25 4.73 -104.60 -0.49 -1.75 16 7 C -0.06 -0.72 4.13 -27.88 -0.12 -0.84 16 8 C -0.10 -1.38 1.91 -91.77 -0.18 -1.55 16 9 H 0.09 1.10 7.81 -51.92 -0.41 0.69 16 10 C -0.15 -2.23 8.03 37.16 0.30 -1.93 16 11 C 0.52 8.89 6.97 -10.99 -0.08 8.82 16 12 O -0.55 -10.99 15.55 5.56 0.09 -10.90 16 13 N -0.59 -9.99 2.73 -181.58 -0.50 -10.48 16 14 C 0.07 1.08 9.32 59.85 0.56 1.64 16 15 C 0.11 1.87 5.06 -4.04 -0.02 1.85 16 16 C 0.15 3.12 3.20 -67.93 -0.22 2.91 16 17 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 18 C -0.16 -2.95 9.49 37.16 0.35 -2.60 16 19 N -0.72 -17.01 4.57 -53.42 -0.24 -17.25 16 20 C -0.23 -6.14 9.93 -15.06 -0.15 -6.29 16 21 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.94 -26.65 13.06 55.49 0.72 -25.92 16 24 Si 0.90 22.08 29.55 -169.99 -5.02 17.05 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 C -0.08 -0.82 9.69 -39.60 -0.38 -1.20 16 29 C -0.21 -2.09 9.04 -39.43 -0.36 -2.44 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 32 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 33 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.13 1.38 8.04 -52.48 -0.42 0.96 16 35 H 0.08 0.96 8.00 -51.93 -0.42 0.55 16 36 H 0.08 1.10 8.06 -51.93 -0.42 0.68 16 37 H 0.06 0.82 6.91 -51.93 -0.36 0.46 16 38 H 0.08 1.41 5.27 -51.93 -0.27 1.14 16 39 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 1.57 5.77 -51.93 -0.30 1.27 16 42 H 0.08 1.26 4.23 -51.93 -0.22 1.04 16 43 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 44 H 0.08 1.35 7.36 -51.93 -0.38 0.97 16 45 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.38 9.25 5.40 -40.82 -0.22 9.03 16 49 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 50 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 51 H 0.12 0.97 6.30 -52.49 -0.33 0.64 16 LS Contribution 404.68 15.07 6.10 6.10 Total: -1.00 -31.34 404.68 -8.23 -39.57 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -8.31 Total: 10.26 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -0.87 Total: -4.85 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.01 Total: -53.66 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.12 Total: -14.47 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.34 -8.23 -39.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507160685.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.108 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds