Wall clock time and date at job start Tue Mar 31 2020 20:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 116.99972 * 2 1 4 4 C 1.38725 * 120.05679 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94524 * 180.02562 * 4 3 2 6 6 C 1.38262 * 120.05514 * 0.27139 * 5 4 3 7 7 C 1.50704 * 119.94612 * 179.70531 * 6 5 4 8 8 C 1.52998 * 109.47264 * 89.99739 * 7 6 5 9 9 H 1.09007 * 109.46925 * 55.00476 * 8 7 6 10 10 C 1.53001 * 109.47178 * 295.00219 * 8 7 6 11 11 C 1.50700 * 109.47311 * 175.00057 * 8 7 6 12 12 O 1.21283 * 119.99728 * 6.77710 * 11 8 7 13 13 N 1.34773 * 119.99901 * 186.77596 * 11 8 7 14 14 C 1.46500 * 120.00366 * 4.68735 * 13 11 8 15 15 C 1.46499 * 119.99526 * 184.68658 * 13 11 8 16 16 C 1.52999 * 109.47197 * 90.00175 * 15 13 11 17 17 H 1.09003 * 109.47363 * 294.99604 * 16 15 13 18 18 C 1.53001 * 109.47481 * 174.99823 * 16 15 13 19 19 N 1.46504 * 109.47417 * 54.99794 * 16 15 13 20 20 C 1.36935 * 120.00175 * 205.00239 * 19 16 15 21 21 H 1.08004 * 120.00122 * 359.97438 * 20 19 16 22 22 C 1.38810 * 119.99854 * 179.97438 * 20 19 16 23 23 N 1.31618 * 120.00100 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00074 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47150 * 59.99369 * 24 22 20 26 26 H 1.48493 * 109.47594 * 179.97438 * 24 22 20 27 27 H 1.48508 * 109.46864 * 299.99863 * 24 22 20 28 28 C 1.38269 * 120.11367 * 359.44750 * 6 5 4 29 29 C 1.38148 * 120.05188 * 0.55680 * 28 6 5 30 30 H 1.09002 * 109.47020 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46912 * 299.99842 * 1 2 3 32 32 H 1.08997 * 109.47744 * 59.99716 * 1 2 3 33 33 H 1.08002 * 120.03191 * 359.97438 * 4 3 2 34 34 H 1.08004 * 119.97172 * 180.02562 * 5 4 3 35 35 H 1.08996 * 109.47431 * 210.00077 * 7 6 5 36 36 H 1.09005 * 109.46767 * 330.00247 * 7 6 5 37 37 H 1.09005 * 109.46971 * 69.37923 * 10 8 7 38 38 H 1.08998 * 109.46954 * 189.37259 * 10 8 7 39 39 H 1.08998 * 109.47329 * 309.37738 * 10 8 7 40 40 H 1.08996 * 109.47299 * 84.65580 * 14 13 11 41 41 H 1.08997 * 109.46746 * 204.65550 * 14 13 11 42 42 H 1.08993 * 109.46943 * 324.65511 * 14 13 11 43 43 H 1.09004 * 109.47385 * 209.99859 * 15 13 11 44 44 H 1.08999 * 109.47592 * 330.00336 * 15 13 11 45 45 H 1.09003 * 109.47257 * 59.99348 * 18 16 15 46 46 H 1.08994 * 109.47422 * 179.97438 * 18 16 15 47 47 H 1.09004 * 109.47372 * 300.00087 * 18 16 15 48 48 H 0.97005 * 119.99301 * 24.99884 * 19 16 15 49 49 H 0.97006 * 119.99932 * 179.97438 * 23 22 20 50 50 H 1.07997 * 119.97639 * 180.25494 * 28 6 5 51 51 H 1.07994 * 120.02994 * 179.74480 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3019 3.6758 0.0067 7 6 3.9860 5.0186 0.0140 8 6 4.2171 5.4810 -1.4260 9 1 3.2695 5.4790 -1.9647 10 6 5.1980 4.5307 -2.1156 11 6 4.7886 6.8755 -1.4202 12 8 5.1059 7.3964 -0.3719 13 7 4.9470 7.5436 -2.5799 14 6 4.4697 6.9568 -3.8345 15 6 5.5965 8.8567 -2.5857 16 6 7.1039 8.6792 -2.7784 17 1 7.5210 8.1552 -1.9184 18 6 7.7665 10.0521 -2.9094 19 7 7.3525 7.8991 -3.9933 20 6 8.5119 7.1817 -4.1210 21 1 9.2432 7.1912 -3.3263 22 6 8.7471 6.4421 -5.2719 23 7 7.8556 6.4300 -6.2401 24 14 10.3283 5.4628 -5.4459 25 1 10.4134 4.4617 -4.3524 26 1 10.3369 4.7652 -6.7568 27 1 11.4915 6.3826 -5.3665 28 6 1.9210 3.6048 0.0014 29 6 1.2914 2.3751 0.0010 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 4.0209 0.3800 -0.0005 34 1 5.1345 2.5751 -0.0008 35 1 3.3582 5.7434 0.5321 36 1 4.9441 4.9353 0.5271 37 1 4.7196 3.5634 -2.2692 38 1 5.4915 4.9478 -3.0789 39 1 6.0816 4.4038 -1.4902 40 1 3.4116 7.1845 -3.9627 41 1 5.0347 7.3734 -4.6684 42 1 4.6080 5.8761 -3.8058 43 1 5.1943 9.4575 -3.4015 44 1 5.4083 9.3595 -1.6372 45 1 7.5816 10.6326 -2.0056 46 1 8.8405 9.9257 -3.0462 47 1 7.3496 10.5762 -3.7694 48 1 6.6958 7.8908 -4.7071 49 1 8.0202 5.9135 -7.0446 50 1 1.3341 4.5114 0.0025 51 1 0.2129 2.3202 0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507160685.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:49 Heat of formation + Delta-G solvation = -53.601671 kcal Electronic energy + Delta-G solvation = -29468.186858 eV Core-core repulsion = 25560.667786 eV Total energy + Delta-G solvation = -3907.519071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.39937 -40.86928 -38.81173 -37.88337 -35.95056 -35.41403 -33.84678 -32.09437 -31.32022 -30.55972 -28.64151 -28.06395 -27.31284 -26.82611 -25.65499 -24.03265 -23.28696 -22.05513 -21.44630 -19.84526 -19.23940 -19.04761 -18.09253 -17.16286 -17.14154 -16.76550 -16.59952 -16.37086 -16.09490 -15.61035 -15.56683 -15.33202 -15.10149 -14.71248 -14.54699 -14.29075 -13.93895 -13.82380 -13.68285 -13.50464 -13.40323 -13.20864 -13.04502 -12.97403 -12.78724 -12.75810 -12.63549 -12.50547 -12.30690 -12.19938 -12.09241 -12.00409 -11.78731 -11.66392 -11.61289 -11.56258 -10.95833 -10.59039 -9.91437 -9.48865 -9.00933 -8.91137 -7.89243 -5.14067 0.41789 0.45511 1.48030 1.48180 1.54257 1.68920 2.20190 2.41859 2.58606 2.81014 3.44143 3.52096 3.83347 3.90119 3.93905 3.99404 4.05328 4.13349 4.20386 4.31770 4.33117 4.40776 4.41753 4.46529 4.50968 4.52827 4.64662 4.66504 4.72385 4.75088 4.75979 4.82858 4.85986 4.92185 4.93479 5.01485 5.13125 5.14792 5.21573 5.27128 5.34592 5.39850 5.42505 5.45196 5.55209 5.72827 5.75278 5.85338 6.33222 6.48545 6.53311 7.26111 7.41526 8.14279 8.43335 9.32911 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012679 B = 0.002897 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.879537 B = 9662.214816 C =11042.132014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.109 3.891 4 C -0.164 4.164 5 C -0.080 4.080 6 C -0.118 4.118 7 C -0.047 4.047 8 C -0.090 4.090 9 H 0.113 0.887 10 C -0.143 4.143 11 C 0.513 3.487 12 O -0.586 6.586 13 N -0.596 5.596 14 C 0.073 3.927 15 C 0.114 3.886 16 C 0.153 3.847 17 H 0.020 0.980 18 C -0.153 4.153 19 N -0.722 5.722 20 C -0.231 4.231 21 H 0.058 0.942 22 C -0.061 4.061 23 N -0.958 5.958 24 Si 0.956 3.044 25 H -0.285 1.285 26 H -0.293 1.293 27 H -0.286 1.286 28 C -0.078 4.078 29 C -0.206 4.206 30 H 0.116 0.884 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.045 0.955 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.035 0.965 47 H 0.054 0.946 48 H 0.378 0.622 49 H 0.250 0.750 50 H 0.142 0.858 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.387 -7.239 10.858 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.064 3.936 4 C -0.182 4.182 5 C -0.098 4.098 6 C -0.119 4.119 7 C -0.085 4.085 8 C -0.111 4.111 9 H 0.131 0.869 10 C -0.201 4.201 11 C 0.303 3.697 12 O -0.467 6.467 13 N -0.326 5.326 14 C -0.070 4.070 15 C -0.009 4.009 16 C 0.044 3.956 17 H 0.039 0.961 18 C -0.213 4.213 19 N -0.365 5.365 20 C -0.363 4.363 21 H 0.076 0.924 22 C -0.254 4.254 23 N -0.608 5.608 24 Si 0.786 3.214 25 H -0.212 1.212 26 H -0.219 1.219 27 H -0.213 1.213 28 C -0.096 4.096 29 C -0.224 4.224 30 H 0.135 0.865 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.054 0.946 47 H 0.073 0.927 48 H 0.213 0.787 49 H 0.059 0.941 50 H 0.160 0.840 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.999 -7.232 11.409 22.504 hybrid contribution 1.035 -0.390 -0.675 1.295 sum -16.964 -7.622 10.735 21.474 Atomic orbital electron populations 1.23323 0.76557 1.05444 1.02247 1.86042 1.23414 1.26999 1.88800 1.19214 0.92540 0.84792 0.97016 1.20577 0.91955 0.98836 1.06879 1.21018 1.00291 0.91109 0.97357 1.19747 0.94023 0.94458 1.03633 1.20215 1.00624 0.93324 0.94291 1.21204 1.00833 0.90295 0.98779 0.86892 1.21916 0.98240 0.99453 1.00447 1.21082 0.77664 0.88189 0.82804 1.90612 1.53496 1.70373 1.32216 1.47685 1.57742 1.19489 1.07707 1.22173 0.99388 1.00375 0.85025 1.21747 0.91801 0.84329 1.03057 1.20765 0.94047 0.91881 0.88942 0.96139 1.22219 1.00236 0.97607 1.01232 1.42490 1.20962 1.55673 1.17354 1.19340 0.96543 1.20163 1.00245 0.92432 1.25216 1.00793 1.02486 0.96906 1.69729 1.36315 1.46833 1.07950 0.85482 0.80701 0.78791 0.76380 1.21171 1.21944 1.21281 1.21073 0.93617 0.97965 0.96938 1.21440 1.01051 0.91691 1.08238 0.86541 0.91675 0.91775 0.84900 0.85170 0.90470 0.91872 0.90076 0.92055 0.93557 0.90387 0.91707 0.90103 0.89152 0.89659 0.91561 0.94592 0.92683 0.78673 0.94099 0.84006 0.83289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.58 10.50 -92.42 -0.97 -7.55 16 3 C 0.11 2.28 6.69 22.51 0.15 2.44 16 4 C -0.16 -3.60 9.99 22.36 0.22 -3.38 16 5 C -0.08 -1.78 8.21 22.25 0.18 -1.60 16 6 C -0.12 -2.59 4.73 -19.85 -0.09 -2.69 16 7 C -0.05 -1.16 4.13 29.85 0.12 -1.04 16 8 C -0.09 -2.40 1.91 -11.54 -0.02 -2.42 16 9 H 0.11 2.50 7.81 -2.38 -0.02 2.48 16 10 C -0.14 -4.16 8.03 71.98 0.58 -3.58 16 11 C 0.51 17.29 6.97 87.66 0.61 17.90 16 12 O -0.59 -23.23 15.55 -3.04 -0.05 -23.28 16 13 N -0.60 -19.60 2.73 -846.78 -2.31 -21.91 16 14 C 0.07 2.16 9.32 127.77 1.19 3.35 16 15 C 0.11 3.81 5.06 86.38 0.44 4.25 16 16 C 0.15 6.18 3.20 44.99 0.14 6.32 16 17 H 0.02 0.94 8.08 -2.39 -0.02 0.92 16 18 C -0.15 -5.43 9.49 71.98 0.68 -4.74 16 19 N -0.72 -34.45 4.57 -322.93 -1.47 -35.92 16 20 C -0.23 -12.54 9.93 84.03 0.83 -11.70 16 21 H 0.06 3.17 7.83 -2.91 -0.02 3.15 16 22 C -0.06 -3.37 5.50 84.86 0.47 -2.91 16 23 N -0.96 -54.88 13.06 21.65 0.28 -54.59 16 24 Si 0.96 45.70 29.55 68.60 2.03 47.73 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 27 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 28 C -0.08 -1.46 9.69 22.26 0.22 -1.25 16 29 C -0.21 -3.65 9.04 22.37 0.20 -3.45 16 30 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 32 H 0.06 0.56 7.66 -2.39 -0.02 0.54 16 33 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.13 2.81 8.04 -2.91 -0.02 2.78 16 35 H 0.08 1.89 8.00 -2.39 -0.02 1.87 16 36 H 0.06 1.76 8.06 -2.38 -0.02 1.74 16 37 H 0.08 2.04 6.91 -2.38 -0.02 2.03 16 38 H 0.06 2.08 5.27 -2.39 -0.01 2.06 16 39 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.06 2.27 5.77 -2.39 -0.01 2.25 16 42 H 0.08 2.43 4.23 -2.39 -0.01 2.42 16 43 H 0.09 2.66 8.07 -2.38 -0.02 2.64 16 44 H 0.09 2.78 7.36 -2.39 -0.02 2.76 16 45 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 48 H 0.38 18.49 5.40 -92.70 -0.50 17.99 16 49 H 0.25 14.09 8.31 -92.70 -0.77 13.32 16 50 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 51 H 0.15 1.83 6.30 -2.91 -0.02 1.81 16 Total: -1.00 -67.35 404.68 4.97 -62.38 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: 0.42 Total: 36.33 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 7.04 Total: -3.18 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -3.50 Total: -112.42 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.02 Total: -30.83 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -67.35 4.97 -62.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507160685.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.778 kcal (2) G-P(sol) polarization free energy of solvation -67.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds