Wall clock time and date at job start Tue Mar 31 2020 20:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35902 * 116.99949 * 2 1 4 4 C 1.38731 * 120.05232 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.93700 * 180.02562 * 4 3 2 6 6 C 1.38259 * 120.06224 * 0.28236 * 5 4 3 7 7 C 1.50696 * 119.94988 * 179.69945 * 6 5 4 8 8 C 1.52996 * 109.47079 * 89.99529 * 7 6 5 9 9 H 1.09000 * 109.46955 * 55.00274 * 8 7 6 10 10 C 1.53002 * 109.47278 * 295.00454 * 8 7 6 11 11 C 1.50701 * 109.47323 * 175.00262 * 8 7 6 12 12 O 1.21282 * 119.99803 * 5.35464 * 11 8 7 13 13 N 1.34777 * 120.00304 * 185.34888 * 11 8 7 14 14 C 1.46492 * 119.99913 * 5.14017 * 13 11 8 15 15 C 1.46503 * 119.99904 * 185.13541 * 13 11 8 16 16 C 1.53003 * 109.46631 * 90.00244 * 15 13 11 17 17 H 1.09000 * 109.47073 * 65.00221 * 16 15 13 18 18 C 1.53001 * 109.46600 * 184.99582 * 16 15 13 19 19 N 1.46493 * 109.47321 * 304.99611 * 16 15 13 20 20 C 1.36934 * 119.99950 * 155.00214 * 19 16 15 21 21 H 1.08005 * 120.00273 * 0.02562 * 20 19 16 22 22 C 1.38807 * 120.00309 * 180.02562 * 20 19 16 23 23 N 1.31625 * 119.99958 * 0.02562 * 22 20 19 24 24 Si 1.86810 * 120.00294 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46999 * 90.00148 * 24 22 20 26 26 H 1.48501 * 109.46905 * 210.00106 * 24 22 20 27 27 H 1.48500 * 109.46849 * 330.00138 * 24 22 20 28 28 C 1.38276 * 120.10910 * 359.44137 * 6 5 4 29 29 C 1.38147 * 120.05350 * 0.55916 * 28 6 5 30 30 H 1.09002 * 109.47499 * 299.99769 * 1 2 3 31 31 H 1.09002 * 109.47313 * 60.00087 * 1 2 3 32 32 H 1.09005 * 109.47196 * 179.97438 * 1 2 3 33 33 H 1.07996 * 120.03142 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.96693 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.47607 * 209.99868 * 7 6 5 36 36 H 1.09002 * 109.46554 * 330.00113 * 7 6 5 37 37 H 1.09005 * 109.47138 * 310.11856 * 10 8 7 38 38 H 1.08997 * 109.47446 * 70.11711 * 10 8 7 39 39 H 1.09001 * 109.47392 * 190.12119 * 10 8 7 40 40 H 1.09005 * 109.47177 * 95.85172 * 14 13 11 41 41 H 1.09006 * 109.47375 * 215.85584 * 14 13 11 42 42 H 1.08998 * 109.47403 * 335.85218 * 14 13 11 43 43 H 1.08999 * 109.46664 * 210.00067 * 15 13 11 44 44 H 1.08995 * 109.46917 * 330.00266 * 15 13 11 45 45 H 1.09002 * 109.47537 * 300.00213 * 18 16 15 46 46 H 1.09004 * 109.47325 * 60.00329 * 18 16 15 47 47 H 1.09005 * 109.47153 * 180.02562 * 18 16 15 48 48 H 0.96996 * 120.00324 * 335.00295 * 19 16 15 49 49 H 0.96995 * 119.99934 * 179.97438 * 23 22 20 50 50 H 1.07994 * 119.97331 * 180.25178 * 28 6 5 51 51 H 1.07995 * 120.02720 * 179.74950 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0560 2.5170 0.0011 6 6 3.3019 3.6758 0.0070 7 6 3.9860 5.0185 0.0144 8 6 4.2182 5.4805 -1.4255 9 1 3.2710 5.4783 -1.9650 10 6 5.1995 4.5300 -2.1143 11 6 4.7897 6.8750 -1.4198 12 8 5.0822 7.4060 -0.3694 13 7 4.9758 7.5318 -2.5818 14 6 4.5195 6.9373 -3.8405 15 6 5.6345 8.8405 -2.5861 16 6 7.1441 8.6509 -2.7472 17 1 7.3538 8.2194 -3.7259 18 6 7.8439 10.0063 -2.6270 19 7 7.6378 7.7520 -1.7011 20 6 8.7840 7.0305 -1.9032 21 1 9.3243 7.1245 -2.8337 22 6 9.2515 6.1783 -0.9123 23 7 8.5929 6.0634 0.2215 24 14 10.8155 5.1946 -1.1877 25 1 11.9840 5.9805 -0.7165 26 1 10.7383 3.9197 -0.4301 27 1 10.9674 4.9016 -2.6356 28 6 1.9210 3.6048 0.0007 29 6 1.2914 2.3751 0.0002 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 4.0209 0.3799 0.0005 34 1 5.1345 2.5750 0.0019 35 1 3.3578 5.7436 0.5318 36 1 4.9438 4.9354 0.5281 37 1 6.0769 4.3929 -1.4821 38 1 4.7170 3.5668 -2.2797 39 1 5.5040 4.9531 -3.0716 40 1 3.5344 7.3305 -4.0920 41 1 5.2232 7.1846 -4.6354 42 1 4.4612 5.8544 -3.7308 43 1 5.2526 9.4366 -3.4149 44 1 5.4308 9.3528 -1.6459 45 1 7.4765 10.6752 -3.4053 46 1 7.6342 10.4379 -1.6483 47 1 8.9194 9.8714 -2.7422 48 1 7.1529 7.6679 -0.8653 49 1 8.9194 5.4676 0.9138 50 1 1.3342 4.5114 0.0012 51 1 0.2129 2.3202 -0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507160687.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:58 Heat of formation + Delta-G solvation = -34.619329 kcal Electronic energy + Delta-G solvation = -30014.039144 eV Core-core repulsion = 26107.343209 eV Total energy + Delta-G solvation = -3906.695935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.27417 -39.60556 -37.79913 -35.99055 -34.56810 -33.92898 -31.88329 -31.13600 -30.13857 -28.56054 -27.81670 -26.91044 -25.93126 -25.53629 -23.58577 -22.91168 -22.22709 -20.80324 -19.72056 -18.47461 -18.17789 -17.14513 -16.66378 -16.19779 -15.87791 -15.68592 -15.16056 -14.91324 -14.62338 -14.37572 -14.10542 -13.76207 -13.66248 -13.53807 -13.32470 -12.93016 -12.72815 -12.52344 -12.18270 -12.11962 -12.01181 -11.93644 -11.92940 -11.57843 -11.37732 -11.24053 -11.16135 -10.92612 -10.85967 -10.77920 -10.61324 -10.53753 -10.46405 -10.28979 -9.96481 -9.50277 -9.02447 -8.93582 -8.78158 -8.03962 -7.97750 -6.77490 -5.58684 -2.87965 1.37641 1.44756 3.16545 3.30853 3.48089 3.53643 3.55141 3.60065 3.82058 4.68668 4.71285 4.85055 4.86021 4.91664 4.94633 5.17230 5.21815 5.32304 5.37193 5.41802 5.45491 5.50169 5.55989 5.57593 5.67528 5.71031 5.75345 5.84653 5.88823 5.98884 6.08173 6.11929 6.19204 6.20255 6.28146 6.30396 6.33918 6.41588 6.45788 6.57836 6.72177 6.77296 6.83192 6.86809 6.89110 7.03711 7.22363 7.33524 7.80540 7.98298 8.57661 8.90255 9.70098 10.32944 10.71590 11.61306 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012525 B = 0.003368 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.991005 B = 8311.806842 C = 9834.321195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.113 3.887 4 C -0.150 4.150 5 C -0.070 4.070 6 C -0.103 4.103 7 C -0.060 4.060 8 C -0.094 4.094 9 H 0.081 0.919 10 C -0.148 4.148 11 C 0.530 3.470 12 O -0.522 6.522 13 N -0.609 5.609 14 C 0.070 3.930 15 C 0.109 3.891 16 C 0.155 3.845 17 H 0.042 0.958 18 C -0.163 4.163 19 N -0.719 5.719 20 C -0.236 4.236 21 H 0.063 0.937 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.895 3.105 25 H -0.293 1.293 26 H -0.293 1.293 27 H -0.285 1.285 28 C -0.081 4.081 29 C -0.208 4.208 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.034 0.966 46 H 0.047 0.953 47 H 0.054 0.946 48 H 0.397 0.603 49 H 0.251 0.749 50 H 0.122 0.878 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.221 -6.092 -5.612 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.069 3.931 4 C -0.168 4.168 5 C -0.088 4.088 6 C -0.103 4.103 7 C -0.098 4.098 8 C -0.115 4.115 9 H 0.099 0.901 10 C -0.205 4.205 11 C 0.318 3.682 12 O -0.397 6.397 13 N -0.343 5.343 14 C -0.073 4.073 15 C -0.014 4.014 16 C 0.043 3.957 17 H 0.060 0.940 18 C -0.224 4.224 19 N -0.365 5.365 20 C -0.367 4.367 21 H 0.081 0.919 22 C -0.207 4.207 23 N -0.567 5.567 24 Si 0.727 3.273 25 H -0.220 1.220 26 H -0.219 1.219 27 H -0.211 1.211 28 C -0.099 4.099 29 C -0.227 4.227 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.235 0.765 49 H 0.061 0.939 50 H 0.140 0.860 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.861 -6.099 -5.081 19.546 hybrid contribution 0.631 -0.442 -0.062 0.773 sum -17.230 -6.541 -5.144 19.134 Atomic orbital electron populations 1.23004 0.78782 1.03607 1.01239 1.86055 1.21074 1.27281 1.89083 1.19015 0.92384 0.83939 0.97775 1.20441 0.91221 0.98725 1.06431 1.21058 1.00480 0.90788 0.96505 1.19909 0.93258 0.95623 1.01529 1.20395 1.02004 0.92016 0.95362 1.21135 0.99515 0.92994 0.97864 0.90084 1.21972 0.99460 0.97723 1.01370 1.20326 0.77625 0.87021 0.83274 1.90684 1.50107 1.68148 1.30718 1.47523 1.59816 1.20338 1.06596 1.21976 0.98678 0.99982 0.86675 1.21799 0.93704 0.83771 1.02143 1.20625 0.90479 0.90831 0.93761 0.94013 1.22413 1.01589 0.98517 0.99914 1.42632 1.28682 1.48403 1.16735 1.19164 1.00598 1.17170 0.99802 0.91890 1.24685 0.98722 1.00697 0.96602 1.69736 1.39753 1.41174 1.06021 0.86374 0.84136 0.79791 0.76982 1.22028 1.21925 1.21075 1.20851 0.94100 0.96834 0.98089 1.21146 0.99619 0.92404 1.09540 0.92802 0.92805 0.88522 0.85413 0.84810 0.90812 0.89041 0.90390 0.92458 0.91513 0.93615 0.91663 0.89878 0.91431 0.90315 0.94703 0.93401 0.92721 0.76505 0.93855 0.85959 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.69 10.50 -19.43 -0.20 -3.89 16 3 C 0.11 1.41 6.69 -39.22 -0.26 1.15 16 4 C -0.15 -1.94 9.99 -39.43 -0.39 -2.33 16 5 C -0.07 -0.97 8.23 -39.61 -0.33 -1.29 16 6 C -0.10 -1.41 4.73 -104.60 -0.50 -1.91 16 7 C -0.06 -0.95 4.13 -27.89 -0.12 -1.07 16 8 C -0.09 -1.46 1.88 -91.77 -0.17 -1.63 16 9 H 0.08 1.05 7.73 -51.93 -0.40 0.65 16 10 C -0.15 -2.36 7.91 37.16 0.29 -2.06 16 11 C 0.53 10.05 6.14 -10.98 -0.07 9.98 16 12 O -0.52 -12.12 13.60 5.56 0.08 -12.05 16 13 N -0.61 -10.21 2.77 -181.57 -0.50 -10.71 16 14 C 0.07 0.88 9.72 59.84 0.58 1.46 16 15 C 0.11 1.88 5.18 -4.04 -0.02 1.86 16 16 C 0.15 3.13 3.20 -67.93 -0.22 2.92 16 17 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 18 C -0.16 -3.04 9.49 37.16 0.35 -2.68 16 19 N -0.72 -18.43 4.52 -53.43 -0.24 -18.68 16 20 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 21 H 0.06 1.73 7.83 -52.48 -0.41 1.32 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 23 N -0.92 -27.97 13.06 55.49 0.72 -27.24 16 24 Si 0.90 22.61 29.55 -169.99 -5.02 17.59 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 28 C -0.08 -0.97 9.70 -39.60 -0.38 -1.36 16 29 C -0.21 -2.35 9.04 -39.43 -0.36 -2.71 16 30 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 31 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.13 1.88 8.04 -52.48 -0.42 1.46 16 35 H 0.07 1.16 7.98 -51.93 -0.41 0.75 16 36 H 0.09 1.74 8.06 -51.93 -0.42 1.33 16 37 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 38 H 0.06 0.78 6.96 -51.93 -0.36 0.42 16 39 H 0.07 1.05 5.41 -51.93 -0.28 0.77 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 42 H 0.08 0.99 4.12 -51.93 -0.21 0.78 16 43 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 44 H 0.08 1.49 7.36 -51.93 -0.38 1.11 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.40 11.15 5.24 -40.82 -0.21 10.94 16 49 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 50 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 51 H 0.12 1.08 6.30 -52.49 -0.33 0.75 16 LS Contribution 404.43 15.07 6.09 6.09 Total: -1.00 -33.88 404.43 -8.33 -42.21 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -8.42 Total: 12.30 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -0.84 Total: -5.61 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.02 Total: -56.63 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.13 Total: -15.94 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.88 -8.33 -42.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507160687.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.591 kcal (2) G-P(sol) polarization free energy of solvation -33.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds