Wall clock time and date at job start Tue Mar 31 2020 20:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35902 * 116.99949 * 2 1 4 4 C 1.38731 * 120.05232 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.93700 * 180.02562 * 4 3 2 6 6 C 1.38259 * 120.06224 * 0.28236 * 5 4 3 7 7 C 1.50696 * 119.94988 * 179.69945 * 6 5 4 8 8 C 1.52996 * 109.47079 * 89.99529 * 7 6 5 9 9 H 1.09000 * 109.46955 * 55.00274 * 8 7 6 10 10 C 1.53002 * 109.47278 * 295.00454 * 8 7 6 11 11 C 1.50701 * 109.47323 * 175.00262 * 8 7 6 12 12 O 1.21282 * 119.99803 * 5.35464 * 11 8 7 13 13 N 1.34777 * 120.00304 * 185.34888 * 11 8 7 14 14 C 1.46492 * 119.99913 * 5.14017 * 13 11 8 15 15 C 1.46503 * 119.99904 * 185.13541 * 13 11 8 16 16 C 1.53003 * 109.46631 * 90.00244 * 15 13 11 17 17 H 1.09000 * 109.47073 * 65.00221 * 16 15 13 18 18 C 1.53001 * 109.46600 * 184.99582 * 16 15 13 19 19 N 1.46493 * 109.47321 * 304.99611 * 16 15 13 20 20 C 1.36934 * 119.99950 * 155.00214 * 19 16 15 21 21 H 1.08005 * 120.00273 * 0.02562 * 20 19 16 22 22 C 1.38807 * 120.00309 * 180.02562 * 20 19 16 23 23 N 1.31625 * 119.99958 * 0.02562 * 22 20 19 24 24 Si 1.86810 * 120.00294 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46999 * 90.00148 * 24 22 20 26 26 H 1.48501 * 109.46905 * 210.00106 * 24 22 20 27 27 H 1.48500 * 109.46849 * 330.00138 * 24 22 20 28 28 C 1.38276 * 120.10910 * 359.44137 * 6 5 4 29 29 C 1.38147 * 120.05350 * 0.55916 * 28 6 5 30 30 H 1.09002 * 109.47499 * 299.99769 * 1 2 3 31 31 H 1.09002 * 109.47313 * 60.00087 * 1 2 3 32 32 H 1.09005 * 109.47196 * 179.97438 * 1 2 3 33 33 H 1.07996 * 120.03142 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.96693 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.47607 * 209.99868 * 7 6 5 36 36 H 1.09002 * 109.46554 * 330.00113 * 7 6 5 37 37 H 1.09005 * 109.47138 * 310.11856 * 10 8 7 38 38 H 1.08997 * 109.47446 * 70.11711 * 10 8 7 39 39 H 1.09001 * 109.47392 * 190.12119 * 10 8 7 40 40 H 1.09005 * 109.47177 * 95.85172 * 14 13 11 41 41 H 1.09006 * 109.47375 * 215.85584 * 14 13 11 42 42 H 1.08998 * 109.47403 * 335.85218 * 14 13 11 43 43 H 1.08999 * 109.46664 * 210.00067 * 15 13 11 44 44 H 1.08995 * 109.46917 * 330.00266 * 15 13 11 45 45 H 1.09002 * 109.47537 * 300.00213 * 18 16 15 46 46 H 1.09004 * 109.47325 * 60.00329 * 18 16 15 47 47 H 1.09005 * 109.47153 * 180.02562 * 18 16 15 48 48 H 0.96996 * 120.00324 * 335.00295 * 19 16 15 49 49 H 0.96995 * 119.99934 * 179.97438 * 23 22 20 50 50 H 1.07994 * 119.97331 * 180.25178 * 28 6 5 51 51 H 1.07995 * 120.02720 * 179.74950 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0560 2.5170 0.0011 6 6 3.3019 3.6758 0.0070 7 6 3.9860 5.0185 0.0144 8 6 4.2182 5.4805 -1.4255 9 1 3.2710 5.4783 -1.9650 10 6 5.1995 4.5300 -2.1143 11 6 4.7897 6.8750 -1.4198 12 8 5.0822 7.4060 -0.3694 13 7 4.9758 7.5318 -2.5818 14 6 4.5195 6.9373 -3.8405 15 6 5.6345 8.8405 -2.5861 16 6 7.1441 8.6509 -2.7472 17 1 7.3538 8.2194 -3.7259 18 6 7.8439 10.0063 -2.6270 19 7 7.6378 7.7520 -1.7011 20 6 8.7840 7.0305 -1.9032 21 1 9.3243 7.1245 -2.8337 22 6 9.2515 6.1783 -0.9123 23 7 8.5929 6.0634 0.2215 24 14 10.8155 5.1946 -1.1877 25 1 11.9840 5.9805 -0.7165 26 1 10.7383 3.9197 -0.4301 27 1 10.9674 4.9016 -2.6356 28 6 1.9210 3.6048 0.0007 29 6 1.2914 2.3751 0.0002 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 4.0209 0.3799 0.0005 34 1 5.1345 2.5750 0.0019 35 1 3.3578 5.7436 0.5318 36 1 4.9438 4.9354 0.5281 37 1 6.0769 4.3929 -1.4821 38 1 4.7170 3.5668 -2.2797 39 1 5.5040 4.9531 -3.0716 40 1 3.5344 7.3305 -4.0920 41 1 5.2232 7.1846 -4.6354 42 1 4.4612 5.8544 -3.7308 43 1 5.2526 9.4366 -3.4149 44 1 5.4308 9.3528 -1.6459 45 1 7.4765 10.6752 -3.4053 46 1 7.6342 10.4379 -1.6483 47 1 8.9194 9.8714 -2.7422 48 1 7.1529 7.6679 -0.8653 49 1 8.9194 5.4676 0.9138 50 1 1.3342 4.5114 0.0012 51 1 0.2129 2.3202 -0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507160687.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:57 Heat of formation + Delta-G solvation = -55.309443 kcal Electronic energy + Delta-G solvation = -30014.936335 eV Core-core repulsion = 26107.343209 eV Total energy + Delta-G solvation = -3907.593126 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.35134 -40.83342 -38.79006 -37.57987 -36.05025 -35.36404 -33.77239 -32.10182 -31.29344 -30.42838 -28.63397 -28.06459 -27.20684 -26.71848 -25.64995 -24.05122 -23.29796 -21.97412 -21.25971 -19.88225 -19.11432 -19.03705 -18.01019 -17.15601 -17.12263 -16.64229 -16.56846 -16.38053 -16.04546 -15.53538 -15.52048 -15.22768 -15.06742 -14.58962 -14.41763 -14.27555 -14.02310 -13.82425 -13.60458 -13.47634 -13.35294 -13.13357 -13.01156 -12.90828 -12.82186 -12.74459 -12.65840 -12.39731 -12.27232 -12.15340 -12.04224 -11.95550 -11.76177 -11.66132 -11.59428 -11.52572 -10.91519 -10.45134 -9.92446 -9.36473 -9.00705 -8.85881 -7.79801 -5.08526 0.40716 0.45290 1.44280 1.45857 1.53662 1.87635 2.32693 2.41643 2.59921 2.80809 3.49361 3.62824 3.83851 3.93852 3.98128 4.01539 4.11444 4.22839 4.24566 4.33770 4.37380 4.43467 4.43861 4.49850 4.53946 4.56753 4.65194 4.68403 4.72604 4.77198 4.81162 4.86517 4.88068 4.94491 4.97144 5.04526 5.10364 5.13258 5.25643 5.30969 5.33880 5.41839 5.45063 5.51046 5.57918 5.77878 5.82956 5.85282 6.37769 6.49174 6.64606 7.43442 7.51318 8.30183 8.53643 9.40810 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012525 B = 0.003368 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.991005 B = 8311.806842 C = 9834.321195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.113 3.887 4 C -0.161 4.161 5 C -0.082 4.082 6 C -0.114 4.114 7 C -0.049 4.049 8 C -0.085 4.085 9 H 0.120 0.880 10 C -0.134 4.134 11 C 0.517 3.483 12 O -0.576 6.576 13 N -0.610 5.610 14 C 0.063 3.937 15 C 0.114 3.886 16 C 0.145 3.855 17 H 0.047 0.953 18 C -0.154 4.154 19 N -0.734 5.734 20 C -0.230 4.230 21 H 0.068 0.932 22 C -0.072 4.072 23 N -0.955 5.955 24 Si 0.958 3.042 25 H -0.294 1.294 26 H -0.299 1.299 27 H -0.269 1.269 28 C -0.076 4.076 29 C -0.201 4.201 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.132 0.868 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.027 0.973 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.116 0.884 44 H 0.055 0.945 45 H 0.079 0.921 46 H 0.033 0.967 47 H 0.034 0.966 48 H 0.383 0.617 49 H 0.243 0.757 50 H 0.144 0.856 51 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.920 -6.341 -8.388 23.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.067 3.933 4 C -0.180 4.180 5 C -0.101 4.101 6 C -0.115 4.115 7 C -0.086 4.086 8 C -0.106 4.106 9 H 0.138 0.862 10 C -0.191 4.191 11 C 0.307 3.693 12 O -0.455 6.455 13 N -0.341 5.341 14 C -0.079 4.079 15 C -0.010 4.010 16 C 0.035 3.965 17 H 0.065 0.935 18 C -0.214 4.214 19 N -0.377 5.377 20 C -0.363 4.363 21 H 0.086 0.914 22 C -0.264 4.264 23 N -0.606 5.606 24 Si 0.789 3.211 25 H -0.222 1.222 26 H -0.226 1.226 27 H -0.194 1.194 28 C -0.094 4.094 29 C -0.219 4.219 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.135 0.865 33 H 0.150 0.850 34 H 0.133 0.867 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.046 0.954 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.134 0.866 44 H 0.074 0.926 45 H 0.098 0.902 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.218 0.782 49 H 0.052 0.948 50 H 0.162 0.838 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -20.574 -6.329 -7.955 22.948 hybrid contribution 1.381 -0.348 0.734 1.602 sum -19.193 -6.677 -7.220 21.565 Atomic orbital electron populations 1.23344 0.76446 1.05498 1.02348 1.86044 1.23510 1.26796 1.88795 1.19127 0.92219 0.84915 0.96993 1.20507 0.92186 0.98364 1.06938 1.20934 0.99760 0.91599 0.97776 1.19716 0.94230 0.94049 1.03482 1.20163 0.99687 0.93533 0.95261 1.21134 1.00691 0.90773 0.97991 0.86212 1.21828 0.97814 0.99135 1.00323 1.20968 0.77142 0.87999 0.83209 1.90655 1.52486 1.69517 1.32865 1.47679 1.58821 1.20112 1.07530 1.22267 1.00650 1.00297 0.84677 1.21749 0.91702 0.84616 1.02883 1.20952 0.92723 0.90549 0.92235 0.93463 1.22259 1.00212 0.98229 1.00741 1.42859 1.28074 1.49273 1.17540 1.19501 1.00940 1.16369 0.99461 0.91390 1.25408 1.01853 1.02505 0.96672 1.69931 1.41478 1.42250 1.06945 0.85366 0.80453 0.77915 0.77415 1.22218 1.22639 1.19417 1.21047 0.93085 0.98218 0.97001 1.21439 1.01125 0.91375 1.07965 0.91766 0.91473 0.86479 0.85015 0.86683 0.91054 0.93900 0.95373 0.90151 0.90992 0.90075 0.90655 0.89474 0.86631 0.92615 0.90226 0.94813 0.94657 0.78165 0.94826 0.83784 0.82754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -7.04 10.50 -92.45 -0.97 -8.01 16 3 C 0.11 2.61 6.69 22.51 0.15 2.76 16 4 C -0.16 -4.20 9.99 22.37 0.22 -3.98 16 5 C -0.08 -2.38 8.23 22.25 0.18 -2.20 16 6 C -0.11 -3.18 4.73 -19.85 -0.09 -3.28 16 7 C -0.05 -1.63 4.13 29.85 0.12 -1.50 16 8 C -0.08 -2.65 1.88 -11.54 -0.02 -2.67 16 9 H 0.12 2.81 7.73 -2.39 -0.02 2.79 16 10 C -0.13 -4.36 7.91 71.98 0.57 -3.79 16 11 C 0.52 19.98 6.14 87.66 0.54 20.52 16 12 O -0.58 -28.32 13.60 -3.03 -0.04 -28.36 16 13 N -0.61 -19.61 2.77 -846.76 -2.35 -21.96 16 14 C 0.06 1.36 9.72 127.77 1.24 2.60 16 15 C 0.11 3.76 5.18 86.38 0.45 4.20 16 16 C 0.15 5.76 3.20 44.99 0.14 5.90 16 17 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 18 C -0.15 -5.53 9.49 71.98 0.68 -4.85 16 19 N -0.73 -38.56 4.52 -322.95 -1.46 -40.02 16 20 C -0.23 -13.14 9.93 84.03 0.83 -12.30 16 21 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 22 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 23 N -0.96 -61.42 13.06 21.65 0.28 -61.14 16 24 Si 0.96 47.97 29.55 68.60 2.03 50.00 16 25 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 26 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 27 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 28 C -0.08 -1.67 9.70 22.26 0.22 -1.45 16 29 C -0.20 -3.96 9.04 22.37 0.20 -3.76 16 30 H 0.06 0.60 7.66 -2.39 -0.02 0.59 16 31 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 32 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.13 3.19 8.06 -2.91 -0.02 3.16 16 34 H 0.12 3.65 8.04 -2.91 -0.02 3.63 16 35 H 0.07 2.36 7.98 -2.39 -0.02 2.34 16 36 H 0.04 1.83 8.06 -2.39 -0.02 1.81 16 37 H 0.03 1.18 8.09 -2.38 -0.02 1.16 16 38 H 0.08 2.20 6.96 -2.39 -0.02 2.18 16 39 H 0.07 2.22 5.41 -2.39 -0.01 2.21 16 40 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.07 1.51 8.12 -2.38 -0.02 1.49 16 42 H 0.09 1.82 4.12 -2.39 -0.01 1.81 16 43 H 0.12 2.69 8.07 -2.39 -0.02 2.67 16 44 H 0.06 2.12 7.36 -2.39 -0.02 2.10 16 45 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 47 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 48 H 0.38 22.54 5.24 -92.71 -0.49 22.05 16 49 H 0.24 15.35 8.31 -92.71 -0.77 14.58 16 50 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 51 H 0.15 2.04 6.30 -2.91 -0.02 2.03 16 Total: -1.00 -79.14 404.43 4.94 -74.20 By element: Atomic # 1 Polarization: 41.13 SS G_CDS: 0.43 Total: 41.56 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 7.02 Total: -6.28 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -3.53 Total: -123.11 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -1.01 Total: -36.37 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -79.14 4.94 -74.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507160687.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.892 kcal (2) G-P(sol) polarization free energy of solvation -79.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds