Wall clock time and date at job start Tue Mar 31 2020 20:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47256 * 2 1 4 4 C 1.53004 * 109.46771 * 119.99216 * 2 1 3 5 5 C 1.50703 * 109.47467 * 295.00359 * 4 2 1 6 6 C 1.38233 * 119.99680 * 269.72928 * 5 4 2 7 7 C 1.38240 * 119.99622 * 179.76313 * 6 5 4 8 8 C 1.38233 * 119.99971 * 0.50814 * 7 6 5 9 9 C 1.38231 * 120.00012 * 359.74199 * 8 7 6 10 10 C 1.38228 * 119.99881 * 89.99466 * 5 4 2 11 11 C 1.50696 * 109.47438 * 239.99171 * 2 1 3 12 12 O 1.21287 * 120.00196 * 240.00159 * 11 2 1 13 13 N 1.34775 * 119.99995 * 60.00520 * 11 2 1 14 14 C 1.46505 * 119.99907 * 359.97438 * 13 11 2 15 15 C 1.46497 * 120.00146 * 180.02562 * 13 11 2 16 16 C 1.52999 * 109.46863 * 269.99655 * 15 13 11 17 17 H 1.08998 * 109.47308 * 304.99737 * 16 15 13 18 18 O 1.42893 * 109.47195 * 65.00365 * 16 15 13 19 19 C 1.53002 * 109.46980 * 185.00046 * 16 15 13 20 20 N 1.46503 * 109.47250 * 180.02562 * 19 16 15 21 21 C 1.46501 * 119.99771 * 270.00144 * 20 19 16 22 22 C 1.36938 * 119.99966 * 90.00005 * 20 19 16 23 23 H 1.07999 * 119.99832 * 342.26092 * 22 20 19 24 24 C 1.38808 * 119.99817 * 161.99044 * 22 20 19 25 25 N 1.31624 * 119.99897 * 345.01345 * 24 22 20 26 26 Si 1.86798 * 120.00028 * 165.01363 * 24 22 20 27 27 H 1.48500 * 109.47243 * 89.99833 * 26 24 22 28 28 H 1.48503 * 109.47126 * 209.99683 * 26 24 22 29 29 H 1.48495 * 109.47311 * 329.99821 * 26 24 22 30 30 H 1.09000 * 109.47256 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47444 * 300.00709 * 1 2 3 32 32 H 1.09010 * 109.46685 * 60.00809 * 1 2 3 33 33 H 1.09003 * 109.47022 * 55.00212 * 4 2 1 34 34 H 1.08996 * 109.47256 * 175.00083 * 4 2 1 35 35 H 1.08001 * 120.00035 * 359.97438 * 6 5 4 36 36 H 1.07998 * 119.99713 * 180.22280 * 7 6 5 37 37 H 1.08001 * 119.99943 * 179.72405 * 8 7 6 38 38 H 1.08003 * 120.00419 * 179.97438 * 9 8 7 39 39 H 1.08002 * 120.00390 * 0.02562 * 10 5 4 40 40 H 1.09001 * 109.46840 * 270.00193 * 14 13 11 41 41 H 1.08995 * 109.47071 * 29.99693 * 14 13 11 42 42 H 1.09002 * 109.47240 * 150.00296 * 14 13 11 43 43 H 1.09004 * 109.47214 * 150.00231 * 15 13 11 44 44 H 1.08991 * 109.47504 * 29.99808 * 15 13 11 45 45 H 0.96700 * 114.00331 * 59.99862 * 18 16 15 46 46 H 1.09001 * 109.47495 * 60.00312 * 19 16 15 47 47 H 1.09006 * 109.47163 * 299.99968 * 19 16 15 48 48 H 1.09002 * 109.46907 * 264.95334 * 21 20 19 49 49 H 1.08997 * 109.47164 * 24.95150 * 21 20 19 50 50 H 1.08998 * 109.47068 * 144.95643 * 21 20 19 51 51 H 0.97008 * 119.99569 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6411 0.0573 2.4767 6 6 2.4837 1.0294 2.9826 7 6 2.1158 1.7468 4.1055 8 6 0.9100 1.4848 4.7286 9 6 0.0697 0.5091 4.2257 10 6 0.4353 -0.2047 3.0997 11 6 2.0324 -0.7105 -1.2303 12 8 2.7297 -1.6967 -1.1189 13 7 1.7069 -0.2502 -2.4545 14 6 0.8642 0.9406 -2.5891 15 6 2.1948 -0.9413 -3.6505 16 6 3.5428 -0.3495 -4.0671 17 1 3.4416 0.7278 -4.1986 18 8 4.5140 -0.6166 -3.0536 19 6 3.9929 -0.9838 -5.3847 20 7 5.2840 -0.4176 -5.7834 21 6 5.3297 0.7789 -6.6274 22 6 6.4479 -1.0069 -5.3671 23 1 6.4374 -1.6938 -4.5337 24 6 7.6403 -0.7255 -6.0197 25 7 7.6230 -0.1411 -7.1989 26 14 9.2692 -1.1763 -5.2243 27 1 9.6570 -2.5499 -5.6344 28 1 10.3151 -0.2160 -5.6596 29 1 9.1308 -1.1214 -3.7469 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8902 33 1 1.6053 -1.7197 1.2954 34 1 3.1262 -0.7994 1.2058 35 1 3.4280 1.2307 2.4985 36 1 2.7724 2.5087 4.4986 37 1 0.6245 2.0422 5.6085 38 1 -0.8722 0.3040 4.7128 39 1 -0.2209 -0.9674 2.7072 40 1 -0.1836 0.6423 -2.6226 41 1 1.0273 1.5994 -1.7361 42 1 1.1220 1.4661 -3.5086 43 1 1.4769 -0.8157 -4.4610 44 1 2.3155 -2.0025 -3.4332 45 1 4.6561 -1.5578 -2.8833 46 1 3.2522 -0.7801 -6.1579 47 1 4.0941 -2.0612 -5.2533 48 1 5.4319 0.4833 -7.6716 49 1 4.4096 1.3491 -6.4996 50 1 6.1818 1.3945 -6.3391 51 1 8.4563 0.0551 -7.6552 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507729754.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:07 Heat of formation + Delta-G solvation = -34.659573 kcal Electronic energy + Delta-G solvation = -29326.498770 eV Core-core repulsion = 25419.801089 eV Total energy + Delta-G solvation = -3906.697680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.38015 -39.33791 -37.29131 -35.39184 -35.12822 -34.36936 -31.47879 -31.18638 -31.02923 -29.35508 -27.30340 -26.65614 -26.00871 -25.54767 -23.46098 -22.70555 -21.92260 -20.86811 -20.37750 -19.01257 -17.40938 -16.83098 -16.66610 -16.19183 -15.88749 -15.52082 -15.28723 -14.89309 -14.79150 -14.50911 -14.24659 -14.03812 -13.61749 -13.49286 -13.36329 -13.21694 -12.94986 -12.82772 -12.67371 -12.57230 -12.37935 -12.05858 -11.81792 -11.49746 -11.40416 -11.29833 -11.13483 -11.00230 -10.98640 -10.76709 -10.61945 -10.47566 -10.29104 -9.91857 -9.81896 -9.63708 -9.46726 -9.13717 -8.90214 -8.53045 -8.28813 -6.66455 -5.61499 -3.01292 1.11448 1.16545 2.77848 3.05063 3.46738 3.53047 3.56000 3.58524 4.32994 4.59789 4.60540 4.67941 4.73934 4.81733 4.83787 4.91196 4.98638 5.06766 5.12845 5.24280 5.26030 5.32011 5.33169 5.43239 5.49717 5.55437 5.55829 5.61287 5.64504 5.74875 5.78559 5.83352 5.92590 5.96715 6.03184 6.04710 6.10561 6.23662 6.28200 6.45361 6.50824 6.60975 6.73827 6.77947 6.82652 7.45857 7.46805 7.76647 7.93394 8.31525 8.44490 8.54672 9.34109 9.97369 10.43578 11.44595 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.002480 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.918776 B =11289.177209 C =12322.501762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.101 4.101 3 H 0.096 0.904 4 C -0.063 4.063 5 C -0.075 4.075 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.128 4.128 9 C -0.121 4.121 10 C -0.116 4.116 11 C 0.523 3.477 12 O -0.532 6.532 13 N -0.609 5.609 14 C 0.077 3.923 15 C 0.081 3.919 16 C 0.072 3.928 17 H 0.083 0.917 18 O -0.539 6.539 19 C 0.125 3.875 20 N -0.594 5.594 21 C 0.166 3.834 22 C -0.232 4.232 23 H 0.069 0.931 24 C -0.008 4.008 25 N -0.916 5.916 26 Si 0.903 3.097 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.280 1.280 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.367 0.633 46 H 0.042 0.958 47 H 0.050 0.950 48 H 0.028 0.972 49 H -0.008 1.008 50 H 0.046 0.954 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.519 3.840 18.491 27.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.123 4.123 3 H 0.114 0.886 4 C -0.101 4.101 5 C -0.075 4.075 6 C -0.134 4.134 7 C -0.137 4.137 8 C -0.146 4.146 9 C -0.139 4.139 10 C -0.134 4.134 11 C 0.311 3.689 12 O -0.408 6.408 13 N -0.342 5.342 14 C -0.066 4.066 15 C -0.042 4.042 16 C 0.008 3.992 17 H 0.101 0.899 18 O -0.342 6.342 19 C -0.005 4.005 20 N -0.316 5.316 21 C 0.021 3.979 22 C -0.361 4.361 23 H 0.087 0.913 24 C -0.205 4.205 25 N -0.563 5.563 26 Si 0.733 3.267 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.205 1.205 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.214 0.786 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.046 0.954 49 H 0.011 0.989 50 H 0.065 0.935 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -19.955 4.022 18.424 27.455 hybrid contribution 0.821 -0.530 0.249 1.008 sum -19.134 3.492 18.672 26.962 Atomic orbital electron populations 1.22126 0.93231 1.02826 1.03367 1.21202 0.97462 1.00842 0.92746 0.88641 1.20422 1.02528 0.97871 0.89237 1.19930 0.94428 0.96574 0.96609 1.21158 0.99767 0.95942 0.96522 1.21165 0.96776 0.99678 0.96042 1.21133 0.94854 0.98451 1.00141 1.21136 0.99662 0.96553 0.96588 1.21087 0.96322 1.00048 0.95923 1.20428 0.79784 0.84531 0.84180 1.90668 1.37262 1.26653 1.86255 1.47710 1.51274 1.29154 1.06088 1.21935 0.94018 0.87533 1.03157 1.22387 0.97446 0.98091 0.86287 1.23121 0.85593 1.00097 0.90369 0.89932 1.86554 1.60950 1.29462 1.57278 1.21326 0.89052 0.96763 0.93315 1.43777 1.00328 1.28983 1.58541 1.20795 0.95423 0.87212 0.94482 1.19166 0.84947 1.22649 1.09365 0.91275 1.24888 0.98202 1.01538 0.95856 1.70110 1.25350 1.47884 1.12914 0.86266 0.83902 0.77407 0.79088 1.21729 1.21810 1.20538 0.92261 0.91289 0.91109 0.90347 0.89782 0.85892 0.86150 0.86352 0.86264 0.86107 0.92484 0.90999 0.91036 0.90329 0.89846 0.78602 0.93995 0.93203 0.95419 0.98915 0.93521 0.94031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 8.40 37.16 0.31 -0.93 16 2 C -0.10 -1.04 1.91 -91.77 -0.18 -1.22 16 3 H 0.10 0.96 7.40 -51.93 -0.38 0.57 16 4 C -0.06 -0.67 4.19 -27.88 -0.12 -0.79 16 5 C -0.08 -0.72 4.71 -104.63 -0.49 -1.22 16 6 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 7 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 8 C -0.13 -1.00 10.05 -39.59 -0.40 -1.40 16 9 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 10 C -0.12 -0.98 7.96 -39.58 -0.32 -1.30 16 11 C 0.52 7.19 6.70 -10.99 -0.07 7.12 16 12 O -0.53 -9.21 14.48 -2.22 -0.03 -9.25 16 13 N -0.61 -7.59 2.86 -181.57 -0.52 -8.11 16 14 C 0.08 0.67 8.80 59.85 0.53 1.20 16 15 C 0.08 1.12 5.11 -4.04 -0.02 1.10 16 16 C 0.07 1.27 3.48 -26.73 -0.09 1.18 16 17 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 18 O -0.54 -11.15 11.32 -43.01 -0.49 -11.64 16 19 C 0.12 2.49 5.36 -4.04 -0.02 2.47 16 20 N -0.59 -15.19 2.88 -181.11 -0.52 -15.71 16 21 C 0.17 4.18 8.97 59.85 0.54 4.72 16 22 C -0.23 -6.54 9.08 -15.06 -0.14 -6.68 16 23 H 0.07 1.92 7.69 -52.49 -0.40 1.52 16 24 C -0.01 -0.24 5.08 -17.43 -0.09 -0.33 16 25 N -0.92 -27.54 10.53 55.49 0.58 -26.95 16 26 Si 0.90 22.96 29.58 -169.99 -5.03 17.93 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.50 6.27 -51.93 -0.33 0.17 16 32 H 0.07 0.48 4.53 -51.92 -0.24 0.25 16 33 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 34 H 0.08 1.04 7.90 -51.93 -0.41 0.63 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 39 H 0.12 0.87 8.04 -52.49 -0.42 0.45 16 40 H 0.06 0.39 6.95 -51.93 -0.36 0.03 16 41 H 0.07 0.55 6.01 -51.93 -0.31 0.24 16 42 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 43 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 44 H 0.08 1.23 7.42 -51.93 -0.39 0.85 16 45 H 0.37 7.31 8.75 45.56 0.40 7.71 16 46 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 47 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 48 H 0.03 0.75 7.47 -51.93 -0.39 0.36 16 49 H -0.01 -0.17 8.03 -51.93 -0.42 -0.59 16 50 H 0.05 1.29 7.04 -51.93 -0.37 0.92 16 51 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 403.23 15.07 6.08 6.08 Total: -1.00 -34.32 403.23 -9.44 -43.76 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -7.78 Total: 4.22 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -1.74 Total: -0.32 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.46 Total: -50.78 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.52 Total: -20.89 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.03 Total: 17.93 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.32 -9.44 -43.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507729754.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.100 kcal (2) G-P(sol) polarization free energy of solvation -34.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds