Wall clock time and date at job start Tue Mar 31 2020 20:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47256 * 2 1 4 4 C 1.53004 * 109.46771 * 119.99216 * 2 1 3 5 5 C 1.50703 * 109.47467 * 295.00359 * 4 2 1 6 6 C 1.38233 * 119.99680 * 269.72928 * 5 4 2 7 7 C 1.38240 * 119.99622 * 179.76313 * 6 5 4 8 8 C 1.38233 * 119.99971 * 0.50814 * 7 6 5 9 9 C 1.38231 * 120.00012 * 359.74199 * 8 7 6 10 10 C 1.38228 * 119.99881 * 89.99466 * 5 4 2 11 11 C 1.50696 * 109.47438 * 239.99171 * 2 1 3 12 12 O 1.21287 * 120.00196 * 240.00159 * 11 2 1 13 13 N 1.34775 * 119.99995 * 60.00520 * 11 2 1 14 14 C 1.46505 * 119.99907 * 359.97438 * 13 11 2 15 15 C 1.46497 * 120.00146 * 180.02562 * 13 11 2 16 16 C 1.52999 * 109.46863 * 269.99655 * 15 13 11 17 17 H 1.08998 * 109.47308 * 304.99737 * 16 15 13 18 18 O 1.42893 * 109.47195 * 65.00365 * 16 15 13 19 19 C 1.53002 * 109.46980 * 185.00046 * 16 15 13 20 20 N 1.46503 * 109.47250 * 180.02562 * 19 16 15 21 21 C 1.46501 * 119.99771 * 270.00144 * 20 19 16 22 22 C 1.36938 * 119.99966 * 90.00005 * 20 19 16 23 23 H 1.07999 * 119.99832 * 342.26092 * 22 20 19 24 24 C 1.38808 * 119.99817 * 161.99044 * 22 20 19 25 25 N 1.31624 * 119.99897 * 345.01345 * 24 22 20 26 26 Si 1.86798 * 120.00028 * 165.01363 * 24 22 20 27 27 H 1.48500 * 109.47243 * 89.99833 * 26 24 22 28 28 H 1.48503 * 109.47126 * 209.99683 * 26 24 22 29 29 H 1.48495 * 109.47311 * 329.99821 * 26 24 22 30 30 H 1.09000 * 109.47256 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47444 * 300.00709 * 1 2 3 32 32 H 1.09010 * 109.46685 * 60.00809 * 1 2 3 33 33 H 1.09003 * 109.47022 * 55.00212 * 4 2 1 34 34 H 1.08996 * 109.47256 * 175.00083 * 4 2 1 35 35 H 1.08001 * 120.00035 * 359.97438 * 6 5 4 36 36 H 1.07998 * 119.99713 * 180.22280 * 7 6 5 37 37 H 1.08001 * 119.99943 * 179.72405 * 8 7 6 38 38 H 1.08003 * 120.00419 * 179.97438 * 9 8 7 39 39 H 1.08002 * 120.00390 * 0.02562 * 10 5 4 40 40 H 1.09001 * 109.46840 * 270.00193 * 14 13 11 41 41 H 1.08995 * 109.47071 * 29.99693 * 14 13 11 42 42 H 1.09002 * 109.47240 * 150.00296 * 14 13 11 43 43 H 1.09004 * 109.47214 * 150.00231 * 15 13 11 44 44 H 1.08991 * 109.47504 * 29.99808 * 15 13 11 45 45 H 0.96700 * 114.00331 * 59.99862 * 18 16 15 46 46 H 1.09001 * 109.47495 * 60.00312 * 19 16 15 47 47 H 1.09006 * 109.47163 * 299.99968 * 19 16 15 48 48 H 1.09002 * 109.46907 * 264.95334 * 21 20 19 49 49 H 1.08997 * 109.47164 * 24.95150 * 21 20 19 50 50 H 1.08998 * 109.47068 * 144.95643 * 21 20 19 51 51 H 0.97008 * 119.99569 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6411 0.0573 2.4767 6 6 2.4837 1.0294 2.9826 7 6 2.1158 1.7468 4.1055 8 6 0.9100 1.4848 4.7286 9 6 0.0697 0.5091 4.2257 10 6 0.4353 -0.2047 3.0997 11 6 2.0324 -0.7105 -1.2303 12 8 2.7297 -1.6967 -1.1189 13 7 1.7069 -0.2502 -2.4545 14 6 0.8642 0.9406 -2.5891 15 6 2.1948 -0.9413 -3.6505 16 6 3.5428 -0.3495 -4.0671 17 1 3.4416 0.7278 -4.1986 18 8 4.5140 -0.6166 -3.0536 19 6 3.9929 -0.9838 -5.3847 20 7 5.2840 -0.4176 -5.7834 21 6 5.3297 0.7789 -6.6274 22 6 6.4479 -1.0069 -5.3671 23 1 6.4374 -1.6938 -4.5337 24 6 7.6403 -0.7255 -6.0197 25 7 7.6230 -0.1411 -7.1989 26 14 9.2692 -1.1763 -5.2243 27 1 9.6570 -2.5499 -5.6344 28 1 10.3151 -0.2160 -5.6596 29 1 9.1308 -1.1214 -3.7469 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8902 33 1 1.6053 -1.7197 1.2954 34 1 3.1262 -0.7994 1.2058 35 1 3.4280 1.2307 2.4985 36 1 2.7724 2.5087 4.4986 37 1 0.6245 2.0422 5.6085 38 1 -0.8722 0.3040 4.7128 39 1 -0.2209 -0.9674 2.7072 40 1 -0.1836 0.6423 -2.6226 41 1 1.0273 1.5994 -1.7361 42 1 1.1220 1.4661 -3.5086 43 1 1.4769 -0.8157 -4.4610 44 1 2.3155 -2.0025 -3.4332 45 1 4.6561 -1.5578 -2.8833 46 1 3.2522 -0.7801 -6.1579 47 1 4.0941 -2.0612 -5.2533 48 1 5.4319 0.4833 -7.6716 49 1 4.4096 1.3491 -6.4996 50 1 6.1818 1.3945 -6.3391 51 1 8.4563 0.0551 -7.6552 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507729754.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:05 Heat of formation + Delta-G solvation = -55.703458 kcal Electronic energy + Delta-G solvation = -29327.411301 eV Core-core repulsion = 25419.801089 eV Total energy + Delta-G solvation = -3907.610212 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.34485 -40.08840 -38.80109 -36.79128 -36.24642 -35.70921 -33.30079 -32.10973 -31.74207 -30.72637 -28.26386 -27.93023 -27.43886 -27.02112 -24.60630 -23.44962 -23.15272 -22.11922 -21.66865 -19.99438 -18.83087 -18.23275 -17.55339 -17.40866 -17.02800 -16.76863 -16.38568 -16.18568 -15.94542 -15.81916 -15.33399 -15.23815 -14.92566 -14.78276 -14.45907 -14.21432 -14.10915 -13.77352 -13.66326 -13.56521 -13.39295 -13.16387 -13.03232 -12.81846 -12.77375 -12.58339 -12.49190 -12.24189 -12.10989 -12.06675 -11.97665 -11.89636 -11.82545 -11.80546 -11.72543 -11.12723 -10.66711 -10.53042 -9.77345 -9.57223 -9.52260 -8.71117 -7.79753 -5.20614 0.46442 0.53164 1.43018 1.45172 1.55525 1.73633 2.10145 2.52779 2.90996 3.32770 3.47103 3.60131 3.80541 3.87443 3.92045 4.04568 4.12983 4.15095 4.21360 4.23879 4.28562 4.34898 4.43884 4.52883 4.57371 4.59394 4.66090 4.69886 4.76803 4.81647 4.83658 4.84470 4.93580 4.95320 4.99671 5.10929 5.20826 5.23311 5.27363 5.32509 5.38522 5.58520 5.61736 5.64119 5.66574 5.74027 5.77071 6.15860 6.34082 6.47766 6.95514 7.19246 7.28973 7.91449 8.31318 9.24120 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.002480 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.918776 B =11289.177209 C =12322.501762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 H 0.099 0.901 4 C -0.056 4.056 5 C -0.086 4.086 6 C -0.134 4.134 7 C -0.127 4.127 8 C -0.130 4.130 9 C -0.123 4.123 10 C -0.120 4.120 11 C 0.513 3.487 12 O -0.577 6.577 13 N -0.610 5.610 14 C 0.068 3.932 15 C 0.092 3.908 16 C 0.082 3.918 17 H 0.078 0.922 18 O -0.562 6.562 19 C 0.121 3.879 20 N -0.613 5.613 21 C 0.179 3.821 22 C -0.232 4.232 23 H 0.067 0.933 24 C -0.066 4.066 25 N -0.944 5.944 26 Si 0.962 3.038 27 H -0.285 1.285 28 H -0.294 1.294 29 H -0.279 1.279 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.116 0.884 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.133 0.867 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.071 0.929 45 H 0.367 0.633 46 H 0.069 0.931 47 H 0.046 0.954 48 H 0.004 0.996 49 H 0.031 0.969 50 H 0.013 0.987 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.353 4.608 19.912 31.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.114 4.114 3 H 0.117 0.883 4 C -0.094 4.094 5 C -0.086 4.086 6 C -0.152 4.152 7 C -0.144 4.144 8 C -0.148 4.148 9 C -0.141 4.141 10 C -0.138 4.138 11 C 0.302 3.698 12 O -0.457 6.457 13 N -0.341 5.341 14 C -0.074 4.074 15 C -0.032 4.032 16 C 0.019 3.981 17 H 0.096 0.904 18 O -0.366 6.366 19 C -0.006 4.006 20 N -0.336 5.336 21 C 0.034 3.966 22 C -0.363 4.363 23 H 0.085 0.915 24 C -0.259 4.259 25 N -0.593 5.593 26 Si 0.792 3.208 27 H -0.212 1.212 28 H -0.221 1.221 29 H -0.205 1.205 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.134 0.866 36 H 0.152 0.848 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.151 0.849 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.131 0.869 44 H 0.090 0.910 45 H 0.214 0.786 46 H 0.087 0.913 47 H 0.065 0.935 48 H 0.023 0.977 49 H 0.050 0.950 50 H 0.032 0.968 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -22.851 4.805 19.858 30.653 hybrid contribution 1.616 -0.757 -0.149 1.791 sum -21.235 4.048 19.709 29.253 Atomic orbital electron populations 1.22091 0.90827 1.03124 1.04654 1.21175 0.99283 1.00185 0.90764 0.88255 1.20288 1.00691 0.97991 0.90455 1.19847 0.95300 0.96902 0.96507 1.21240 0.99826 0.96746 0.97434 1.21391 0.97522 0.99852 0.95682 1.21464 0.94359 0.98405 1.00601 1.21458 1.00519 0.95956 0.96124 1.21251 0.95946 1.00397 0.96188 1.21089 0.79095 0.84154 0.85419 1.90645 1.39286 1.28758 1.86985 1.47812 1.51142 1.29972 1.05200 1.22239 0.94828 0.86277 1.04025 1.22137 0.95965 0.97180 0.87896 1.22965 0.87062 0.99651 0.88406 0.90422 1.86522 1.62349 1.29565 1.58201 1.21554 0.87346 0.96528 0.95148 1.44024 1.01601 1.29279 1.58669 1.20530 0.95871 0.87147 0.93032 1.19416 0.86251 1.21861 1.08725 0.91525 1.25597 1.01128 1.02617 0.96566 1.70255 1.25507 1.49529 1.14015 0.85333 0.80364 0.77114 0.78034 1.21155 1.22052 1.20490 0.92444 0.90270 0.89493 0.90998 0.92577 0.86604 0.84798 0.84129 0.83902 0.84915 0.89670 0.89951 0.90409 0.86923 0.91046 0.78621 0.91291 0.93537 0.97747 0.95046 0.96813 0.94603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.40 71.98 0.60 -1.39 16 2 C -0.09 -1.84 1.91 -11.54 -0.02 -1.86 16 3 H 0.10 1.89 7.40 -2.39 -0.02 1.87 16 4 C -0.06 -1.23 4.19 29.85 0.13 -1.11 16 5 C -0.09 -1.60 4.71 -19.87 -0.09 -1.70 16 6 C -0.13 -2.55 9.70 22.27 0.22 -2.33 16 7 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 8 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 9 C -0.12 -1.59 10.05 22.27 0.22 -1.37 16 10 C -0.12 -1.83 7.96 22.27 0.18 -1.65 16 11 C 0.51 13.85 6.70 87.66 0.59 14.43 16 12 O -0.58 -20.50 14.48 4.38 0.06 -20.44 16 13 N -0.61 -14.02 2.86 -846.76 -2.42 -16.44 16 14 C 0.07 0.96 8.80 127.77 1.12 2.08 16 15 C 0.09 2.35 5.11 86.38 0.44 2.79 16 16 C 0.08 2.79 3.48 30.59 0.11 2.90 16 17 H 0.08 2.74 8.14 -2.39 -0.02 2.73 16 18 O -0.56 -23.47 11.32 -141.55 -1.60 -25.07 16 19 C 0.12 4.71 5.36 86.38 0.46 5.17 16 20 N -0.61 -31.27 2.88 -726.92 -2.09 -33.36 16 21 C 0.18 9.06 8.97 127.77 1.15 10.20 16 22 C -0.23 -13.23 9.08 84.03 0.76 -12.47 16 23 H 0.07 3.76 7.69 -2.91 -0.02 3.74 16 24 C -0.07 -3.87 5.08 84.86 0.43 -3.44 16 25 N -0.94 -57.98 10.53 21.65 0.23 -57.75 16 26 Si 0.96 48.14 29.58 68.60 2.03 50.17 16 27 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.29 -14.69 7.11 99.48 0.71 -13.99 16 29 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.92 6.27 -2.39 -0.01 0.91 16 32 H 0.09 0.87 4.53 -2.38 -0.01 0.86 16 33 H 0.07 1.62 8.09 -2.39 -0.02 1.60 16 34 H 0.06 1.51 7.90 -2.39 -0.02 1.49 16 35 H 0.12 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.13 1.64 8.04 -2.91 -0.02 1.61 16 40 H 0.09 0.77 6.95 -2.39 -0.02 0.75 16 41 H 0.08 1.01 6.01 -2.39 -0.01 1.00 16 42 H 0.08 1.04 8.07 -2.39 -0.02 1.02 16 43 H 0.11 2.13 8.07 -2.38 -0.02 2.11 16 44 H 0.07 2.04 7.42 -2.39 -0.02 2.02 16 45 H 0.37 15.06 8.75 -74.06 -0.65 14.41 16 46 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 47 H 0.05 1.83 8.04 -2.38 -0.02 1.81 16 48 H 0.00 0.23 7.47 -2.39 -0.02 0.22 16 49 H 0.03 1.31 8.03 -2.39 -0.02 1.29 16 50 H 0.01 0.75 7.04 -2.39 -0.02 0.73 16 51 H 0.24 14.65 8.31 -92.70 -0.77 13.88 16 Total: -1.00 -76.10 403.23 3.21 -72.89 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.26 Total: 23.00 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 6.74 Total: 7.01 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -4.28 Total: -107.55 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -1.54 Total: -45.51 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -76.10 3.21 -72.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507729754.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.185 kcal (2) G-P(sol) polarization free energy of solvation -76.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds