Wall clock time and date at job start Tue Mar 31 2020 17:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 115.55001 * 2 1 4 4 C 1.52993 * 117.49927 * 145.67172 * 2 1 3 5 5 C 1.52999 * 117.49709 * 214.29499 * 2 1 3 6 6 H 1.08993 * 117.50253 * 359.97438 * 5 2 1 7 7 C 1.50702 * 117.49608 * 145.01875 * 5 2 1 8 8 C 1.34514 * 125.79011 * 239.71506 * 7 5 2 9 9 C 1.41382 * 106.83950 * 179.89119 * 8 7 5 10 10 C 1.34508 * 106.84134 * 0.37369 * 9 8 7 11 11 C 1.50701 * 125.78886 * 179.79381 * 10 9 8 12 12 C 1.53006 * 109.47296 * 89.99788 * 11 10 9 13 13 C 1.50701 * 109.47296 * 179.97438 * 12 11 10 14 14 O 1.21273 * 119.99855 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99762 * 179.97438 * 13 12 11 16 16 C 1.46502 * 119.99636 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47170 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47191 * 179.97438 * 17 16 15 19 19 N 1.46494 * 109.46911 * 180.02562 * 18 17 16 20 20 C 1.46501 * 120.00185 * 89.99720 * 19 18 17 21 21 C 1.36940 * 120.00107 * 269.99614 * 19 18 17 22 22 H 1.08002 * 120.00020 * 142.03447 * 21 19 18 23 23 C 1.38810 * 119.99828 * 322.04243 * 21 19 18 24 24 N 1.31619 * 119.99739 * 157.02163 * 23 21 19 25 25 Si 1.86801 * 120.00002 * 337.01513 * 23 21 19 26 26 H 1.48501 * 109.46918 * 95.68670 * 25 23 21 27 27 H 1.48502 * 109.47089 * 215.68452 * 25 23 21 28 28 H 1.48492 * 109.47049 * 335.68485 * 25 23 21 29 29 O 1.34296 * 108.42301 * 359.76837 * 10 9 8 30 30 H 1.09003 * 109.47004 * 325.71543 * 1 2 3 31 31 H 1.08999 * 109.47655 * 85.72058 * 1 2 3 32 32 H 1.08999 * 109.46903 * 205.72145 * 1 2 3 33 33 H 1.09002 * 117.50130 * 214.97377 * 4 2 1 34 34 H 1.09001 * 117.50357 * 359.97438 * 4 2 1 35 35 H 1.08001 * 126.58034 * 0.02714 * 8 7 5 36 36 H 1.08003 * 126.57744 * 180.12284 * 9 8 7 37 37 H 1.08992 * 109.47263 * 209.99670 * 11 10 9 38 38 H 1.09008 * 109.47198 * 330.00115 * 11 10 9 39 39 H 1.09002 * 109.46936 * 300.00072 * 12 11 10 40 40 H 1.08997 * 109.47222 * 59.99983 * 12 11 10 41 41 H 0.96994 * 120.00506 * 359.97438 * 15 13 12 42 42 H 1.09002 * 109.47098 * 299.99856 * 16 15 13 43 43 H 1.08997 * 109.47214 * 59.99861 * 16 15 13 44 44 H 1.09002 * 109.46936 * 299.99885 * 17 16 15 45 45 H 1.08998 * 109.46663 * 59.99280 * 17 16 15 46 46 H 1.09002 * 109.47108 * 299.99805 * 18 17 16 47 47 H 1.08997 * 109.47183 * 59.99798 * 18 17 16 48 48 H 1.09007 * 109.46960 * 85.65252 * 20 19 18 49 49 H 1.09002 * 109.47565 * 205.64505 * 20 19 18 50 50 H 1.08999 * 109.47252 * 325.65322 * 20 19 18 51 51 H 0.97003 * 119.99939 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1207 0.7653 5 6 2.2364 -1.1212 -0.7647 6 1 1.6112 -1.8591 -1.2674 7 6 3.5292 -0.7815 -1.4607 8 6 3.7656 -0.8944 -2.7800 9 6 5.0964 -0.4684 -2.9956 10 6 5.5963 -0.1286 -1.7940 11 6 6.9899 0.3813 -1.5314 12 6 7.0024 1.9078 -1.6345 13 6 8.3959 2.4177 -1.3713 14 8 9.2909 1.6371 -1.1260 15 7 8.6476 3.7412 -1.4096 16 6 10.0023 4.2368 -1.1543 17 6 10.0148 5.7634 -1.2572 18 6 11.4295 6.2810 -0.9900 19 7 11.4413 7.7426 -1.0879 20 6 11.1821 8.5586 0.1009 21 6 11.6945 8.3462 -2.2907 22 1 11.1598 9.2426 -2.5683 23 6 12.6384 7.8059 -3.1533 24 7 12.5815 8.0719 -4.4411 25 14 13.9892 6.7015 -2.4864 26 1 13.5836 5.2804 -2.6317 27 1 15.2428 6.9386 -3.2464 28 1 14.2152 7.0075 -1.0510 29 8 4.6427 -0.3202 -0.8680 30 1 -0.3633 0.8491 0.5789 31 1 -0.3634 0.0767 -1.0248 32 1 -0.3633 -0.9258 0.4460 33 1 3.1716 -0.8748 1.2685 34 1 1.6113 -1.8578 1.2692 35 1 3.0713 -1.2415 -3.5309 36 1 5.6137 -0.4279 -3.9428 37 1 7.3038 0.0821 -0.5315 38 1 7.6751 -0.0382 -2.2682 39 1 6.6884 2.2070 -2.6345 40 1 6.3173 2.3273 -0.8978 41 1 7.9319 4.3655 -1.6069 42 1 10.3161 3.9379 -0.1541 43 1 10.6876 3.8170 -1.8907 44 1 9.7009 6.0626 -2.2572 45 1 9.3296 6.1827 -0.5206 46 1 11.7430 5.9817 0.0102 47 1 12.1150 5.8616 -1.7263 48 1 12.1113 8.7025 0.6524 49 1 10.7861 9.5277 -0.2027 50 1 10.4564 8.0527 0.7377 51 1 13.2413 7.6947 -5.0438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566471626.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:12 Heat of formation + Delta-G solvation = 7.799399 kcal Electronic energy + Delta-G solvation = -27358.692872 eV Core-core repulsion = 23453.836351 eV Total energy + Delta-G solvation = -3904.856521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.89810 -39.69424 -38.19745 -36.55675 -34.85474 -34.19408 -33.08632 -31.85045 -30.92666 -29.93544 -28.31738 -26.49014 -25.76198 -24.44769 -22.47958 -22.03286 -21.67653 -21.17057 -20.86392 -20.19502 -20.06310 -17.56716 -16.86046 -16.78452 -16.27489 -16.03662 -15.60851 -15.44196 -15.23808 -14.83482 -14.48093 -14.07296 -13.99118 -13.56210 -13.44447 -13.37300 -13.21111 -13.06696 -12.74141 -12.70226 -12.55920 -12.36897 -12.25905 -12.10145 -11.94464 -11.71195 -11.40752 -11.30676 -11.20696 -11.03174 -10.92663 -10.55777 -10.54058 -10.41986 -10.08788 -9.88536 -9.76829 -9.54895 -8.95386 -8.53125 -8.43574 -6.84409 -6.02988 -3.44210 1.36438 2.30036 2.52238 2.64478 3.26221 3.31269 3.37177 3.46628 3.52291 3.98533 4.28050 4.35223 4.44487 4.50783 4.64056 4.71930 4.80340 4.82391 4.90861 4.94211 5.01220 5.14796 5.26895 5.27314 5.29755 5.33619 5.43084 5.47871 5.51035 5.54655 5.63136 5.64486 5.69408 5.77676 5.81267 5.83156 5.90641 6.03443 6.14648 6.26064 6.27763 6.31869 6.49204 6.62183 6.69255 6.74603 6.90764 6.93376 7.55206 8.02920 8.24072 8.34806 8.96005 9.68421 10.09794 11.12561 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.001705 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.916418 B =16416.846819 C =16968.516113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.140 4.140 3 H 0.108 0.892 4 C -0.166 4.166 5 C -0.080 4.080 6 H 0.133 0.867 7 C 0.014 3.986 8 C -0.202 4.202 9 C -0.206 4.206 10 C -0.008 4.008 11 C -0.023 4.023 12 C -0.138 4.138 13 C 0.510 3.490 14 O -0.546 6.546 15 N -0.725 5.725 16 C 0.117 3.883 17 C -0.146 4.146 18 C 0.142 3.858 19 N -0.612 5.612 20 C 0.124 3.876 21 C -0.273 4.273 22 H 0.078 0.922 23 C 0.037 3.963 24 N -0.898 5.898 25 Si 0.876 3.124 26 H -0.284 1.284 27 H -0.300 1.300 28 H -0.270 1.270 29 O -0.172 6.172 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.401 0.599 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.059 0.941 46 H 0.040 0.960 47 H 0.055 0.945 48 H 0.006 0.994 49 H 0.045 0.955 50 H 0.026 0.974 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.670 -18.867 7.815 31.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.158 4.158 3 H 0.126 0.874 4 C -0.203 4.203 5 C -0.098 4.098 6 H 0.151 0.849 7 C -0.036 4.036 8 C -0.221 4.221 9 C -0.225 4.225 10 C -0.057 4.057 11 C -0.060 4.060 12 C -0.178 4.178 13 C 0.296 3.704 14 O -0.423 6.423 15 N -0.376 5.376 16 C -0.007 4.007 17 C -0.186 4.186 18 C 0.016 3.984 19 N -0.336 5.336 20 C -0.021 4.021 21 C -0.401 4.401 22 H 0.095 0.905 23 C -0.164 4.164 24 N -0.539 5.539 25 Si 0.706 3.294 26 H -0.212 1.212 27 H -0.228 1.228 28 H -0.195 1.195 29 O -0.069 6.069 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.164 0.836 36 H 0.167 0.833 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.235 0.765 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.059 0.941 47 H 0.073 0.927 48 H 0.025 0.975 49 H 0.063 0.937 50 H 0.045 0.955 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.889 -19.326 8.154 31.046 hybrid contribution 0.481 -0.329 -0.225 0.625 sum -22.408 -19.656 7.929 30.844 Atomic orbital electron populations 1.21392 0.92059 1.02349 1.02258 1.22521 0.95558 0.94796 1.02932 0.87436 1.23197 1.03182 1.01414 0.92516 1.20577 0.91948 1.03119 0.94180 0.84920 1.21320 0.87207 1.03364 0.91678 1.21472 0.97524 1.07800 0.95339 1.21606 0.95680 1.06728 0.98451 1.22414 0.91528 1.04697 0.87109 1.19846 0.87194 0.93601 1.05403 1.21675 0.95187 0.96128 1.04827 1.20527 0.90464 0.82518 0.76878 1.90708 1.47212 1.55718 1.48699 1.46132 1.12628 1.07104 1.71692 1.21488 0.82574 0.95453 1.01164 1.22387 1.01581 0.91433 1.03215 1.21033 0.93614 0.85106 0.98678 1.44038 1.83269 0.99847 1.06453 1.21082 0.96887 0.95198 0.88913 1.18785 1.17457 1.11883 0.91978 0.90454 1.25479 0.97509 0.98199 0.95226 1.69881 1.35742 1.46394 1.01898 0.86944 0.82821 0.80035 0.79607 1.21157 1.22802 1.19468 1.83917 1.19704 1.65562 1.37753 0.91661 0.91859 0.92272 0.88092 0.87901 0.83560 0.83304 0.89270 0.87856 0.88283 0.88613 0.76458 0.91866 0.91528 0.90528 0.92245 0.94147 0.92703 0.97547 0.93653 0.95505 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 10.19 37.16 0.38 -0.18 16 2 C -0.14 -0.88 6.11 -90.62 -0.55 -1.43 16 3 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.17 -1.05 9.81 -26.73 -0.26 -1.32 16 5 C -0.08 -0.56 5.96 -91.77 -0.55 -1.11 16 6 H 0.13 0.70 8.14 -51.93 -0.42 0.27 16 7 C 0.01 0.14 6.80 -35.62 -0.24 -0.11 16 8 C -0.20 -1.88 10.81 -39.70 -0.43 -2.31 16 9 C -0.21 -2.01 10.81 -39.70 -0.43 -2.43 16 10 C -0.01 -0.08 6.57 -35.63 -0.23 -0.31 16 11 C -0.02 -0.23 5.04 -27.88 -0.14 -0.37 16 12 C -0.14 -1.30 5.68 -27.88 -0.16 -1.46 16 13 C 0.51 6.74 7.83 -10.99 -0.09 6.65 16 14 O -0.55 -9.30 15.98 5.56 0.09 -9.21 16 15 N -0.72 -9.37 5.56 -60.29 -0.33 -9.71 16 16 C 0.12 1.84 5.67 -4.04 -0.02 1.82 16 17 C -0.15 -2.53 5.65 -26.73 -0.15 -2.68 16 18 C 0.14 2.99 4.53 -4.05 -0.02 2.97 16 19 N -0.61 -14.43 2.47 -181.12 -0.45 -14.88 16 20 C 0.12 2.46 10.70 59.85 0.64 3.10 16 21 C -0.27 -7.56 9.88 -15.06 -0.15 -7.71 16 22 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 23 C 0.04 1.05 5.29 -17.43 -0.09 0.96 16 24 N -0.90 -27.16 13.97 55.49 0.78 -26.39 16 25 Si 0.88 22.27 25.10 -169.99 -4.27 18.01 16 26 H -0.28 -7.00 6.68 56.52 0.38 -6.62 16 27 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 28 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 29 O -0.17 -1.90 10.36 5.72 0.06 -1.84 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.22 7.90 -51.93 -0.41 -0.19 16 33 H 0.10 0.74 7.96 -51.93 -0.41 0.33 16 34 H 0.10 0.48 8.05 -51.93 -0.42 0.07 16 35 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.15 1.22 8.06 -52.48 -0.42 0.79 16 37 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 38 H 0.10 1.02 8.10 -51.92 -0.42 0.60 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.40 4.16 8.47 -40.82 -0.35 3.82 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 47 H 0.06 1.28 3.38 -51.93 -0.18 1.11 16 48 H 0.01 0.12 8.14 -51.92 -0.42 -0.30 16 49 H 0.04 0.87 8.00 -51.93 -0.42 0.46 16 50 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 51 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 LS Contribution 419.86 15.07 6.33 6.33 Total: -1.00 -33.46 419.86 -9.23 -42.69 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -8.94 Total: 0.91 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -2.50 Total: -5.91 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.01 Total: -50.97 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.15 Total: -11.05 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.27 Total: 18.01 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.46 -9.23 -42.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566471626.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.492 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds