Wall clock time and date at job start Tue Mar 31 2020 20:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46665 * 2 1 4 4 C 1.53004 * 109.47335 * 240.00254 * 2 1 3 5 5 C 1.50703 * 109.46915 * 64.99546 * 4 2 1 6 6 C 1.34521 * 125.78920 * 89.71962 * 5 4 2 7 7 C 1.41376 * 106.83642 * 179.88874 * 6 5 4 8 8 C 1.34510 * 106.84470 * 0.36916 * 7 6 5 9 9 O 1.34300 * 108.42228 * 359.77504 * 8 7 6 10 10 C 1.50693 * 109.47510 * 120.00139 * 2 1 3 11 11 O 1.21279 * 119.99945 * 22.85136 * 10 2 1 12 12 N 1.34777 * 120.00100 * 202.85850 * 10 2 1 13 13 C 1.46922 * 120.63150 * 4.92448 * 12 10 2 14 14 C 1.53190 * 108.77737 * 233.58922 * 13 12 10 15 15 C 1.53044 * 109.31190 * 305.36308 * 14 13 12 16 16 C 1.53038 * 109.53718 * 61.36622 * 15 14 13 17 17 H 1.09011 * 109.49582 * 58.58306 * 16 15 14 18 18 C 1.52992 * 109.49735 * 178.64610 * 16 15 14 19 19 N 1.46503 * 109.47589 * 295.00115 * 18 16 15 20 20 C 1.46500 * 119.99794 * 270.00158 * 19 18 16 21 21 C 1.36932 * 120.00003 * 89.99722 * 19 18 16 22 22 H 1.08002 * 120.00090 * 22.21623 * 21 19 18 23 23 C 1.38810 * 120.00070 * 202.21292 * 21 19 18 24 24 N 1.31612 * 120.00032 * 11.33902 * 23 21 19 25 25 Si 1.86803 * 119.99798 * 191.33956 * 23 21 19 26 26 H 1.48491 * 109.47175 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46778 * 120.00055 * 25 23 21 28 28 H 1.48503 * 109.46917 * 239.99879 * 25 23 21 29 29 C 1.46931 * 120.63185 * 184.64865 * 12 10 2 30 30 H 1.09000 * 109.47411 * 294.30942 * 1 2 3 31 31 H 1.08997 * 109.47421 * 54.31543 * 1 2 3 32 32 H 1.09005 * 109.46844 * 174.31887 * 1 2 3 33 33 H 1.09001 * 109.46696 * 304.99809 * 4 2 1 34 34 H 1.08994 * 109.47159 * 184.99596 * 4 2 1 35 35 H 1.07991 * 126.57806 * 0.02562 * 6 5 4 36 36 H 1.08010 * 126.57471 * 180.12606 * 7 6 5 37 37 H 1.08003 * 125.79002 * 179.79373 * 8 7 6 38 38 H 1.09002 * 109.58698 * 353.38153 * 13 12 10 39 39 H 1.09007 * 109.58557 * 113.80010 * 13 12 10 40 40 H 1.08997 * 109.49923 * 65.32030 * 14 13 12 41 41 H 1.09009 * 109.49849 * 185.41489 * 14 13 12 42 42 H 1.09000 * 109.45687 * 181.38687 * 15 14 13 43 43 H 1.08995 * 109.46352 * 301.35496 * 15 14 13 44 44 H 1.08999 * 109.47284 * 55.00261 * 18 16 15 45 45 H 1.09010 * 109.47217 * 174.99671 * 18 16 15 46 46 H 1.09004 * 109.47234 * 94.43912 * 20 19 18 47 47 H 1.08999 * 109.47004 * 214.43448 * 20 19 18 48 48 H 1.08996 * 109.47285 * 334.43365 * 20 19 18 49 49 H 0.97001 * 120.00423 * 179.97438 * 24 23 21 50 50 H 1.08999 * 109.58812 * 246.20314 * 29 12 10 51 51 H 1.09007 * 109.58427 * 6.62754 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 6 2.3630 1.0314 -3.0593 7 6 1.6191 1.4812 -4.1741 8 6 0.4835 0.7607 -4.2013 9 8 0.5023 -0.1003 -3.1708 10 6 2.0324 -0.7104 1.2304 11 8 1.3220 -1.5108 1.8010 12 7 3.2710 -0.4561 1.6968 13 6 4.1027 0.5875 1.0822 14 6 5.4533 -0.0228 0.6947 15 6 6.0812 -0.6842 1.9238 16 6 5.1690 -1.8072 2.4227 17 1 5.0229 -2.5379 1.6271 18 6 5.8134 -2.4897 3.6308 19 7 7.0516 -3.1528 3.2143 20 6 7.0190 -4.5436 2.7552 21 6 8.2394 -2.4726 3.2541 22 1 8.3487 -1.6142 3.9003 23 6 9.3029 -2.8864 2.4639 24 7 9.1113 -3.7823 1.5191 25 14 11.0063 -2.1714 2.7415 26 1 10.9561 -1.1913 3.8558 27 1 11.9514 -3.2638 3.0859 28 1 11.4654 -1.4915 1.5037 29 6 3.8130 -1.2132 2.8334 30 1 -0.3634 0.4230 0.9365 31 1 -0.3634 0.5994 -0.8347 32 1 -0.3633 -1.0227 -0.1017 33 1 1.6054 -1.7198 -1.2952 34 1 3.1263 -0.7993 -1.2056 35 1 3.3269 1.3978 -2.7384 36 1 1.9056 2.2575 -4.8683 37 1 -0.3089 0.8579 -4.9288 38 1 3.6067 0.9726 0.1913 39 1 4.2587 1.3974 1.7949 40 1 5.3046 -0.7702 -0.0846 41 1 6.1146 0.7614 0.3259 42 1 7.0536 -1.0979 1.6565 43 1 6.2067 0.0585 2.7115 44 1 6.0395 -1.7432 4.3922 45 1 5.1252 -3.2293 4.0403 46 1 6.9380 -4.5657 1.6684 47 1 7.9348 -5.0490 3.0616 48 1 6.1599 -5.0510 3.1939 49 1 9.8544 -4.0713 0.9666 50 1 3.9458 -0.5473 3.6860 51 1 3.1257 -2.0168 3.0982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566744886.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:35 Heat of formation + Delta-G solvation = -8.376364 kcal Electronic energy + Delta-G solvation = -30026.221685 eV Core-core repulsion = 26120.663730 eV Total energy + Delta-G solvation = -3905.557955 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.77832 -40.29583 -37.67396 -35.53767 -35.26681 -33.12308 -32.64057 -31.58619 -30.40786 -30.05633 -26.77832 -26.08387 -25.71625 -25.33578 -23.11467 -22.21523 -21.89778 -21.02999 -20.49261 -19.41404 -18.54023 -17.77028 -17.17633 -16.66555 -16.30045 -15.68706 -15.29894 -14.86759 -14.77339 -14.23373 -14.12483 -13.97761 -13.73879 -13.35330 -13.24396 -13.01930 -13.01080 -12.87660 -12.76819 -12.53940 -12.37639 -12.21438 -11.98597 -11.53715 -11.43961 -11.31257 -11.18763 -10.90290 -10.79150 -10.69202 -10.40133 -10.22236 -10.18653 -10.11284 -10.00363 -9.87189 -9.63100 -9.55400 -8.64725 -8.52477 -8.40247 -6.73535 -5.71373 -3.16075 1.51188 2.38495 2.62313 2.85872 3.11307 3.35986 3.44220 3.45235 4.27689 4.49662 4.58431 4.64561 4.72801 4.84157 4.88458 4.92613 5.14725 5.22350 5.26165 5.32960 5.37188 5.47954 5.48218 5.56958 5.61632 5.66867 5.73549 5.78874 5.80641 5.85962 5.93469 5.94323 6.02777 6.09541 6.15947 6.23363 6.29209 6.30638 6.48503 6.65788 6.70832 6.77392 6.84549 6.94833 7.12091 7.31035 7.42077 7.53130 7.75700 7.82191 8.25006 8.40652 9.25073 9.88831 10.38456 11.33057 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015155 B = 0.002881 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.162620 B = 9716.963053 C =10656.526837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.107 4.107 3 H 0.096 0.904 4 C -0.033 4.033 5 C -0.001 4.001 6 C -0.210 4.210 7 C -0.213 4.213 8 C -0.047 4.047 9 O -0.173 6.173 10 C 0.517 3.483 11 O -0.542 6.542 12 N -0.604 5.604 13 C 0.103 3.897 14 C -0.134 4.134 15 C -0.108 4.108 16 C -0.116 4.116 17 H 0.065 0.935 18 C 0.158 3.842 19 N -0.600 5.600 20 C 0.164 3.836 21 C -0.244 4.244 22 H 0.068 0.932 23 C 0.000 4.000 24 N -0.907 5.907 25 Si 0.899 3.101 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.114 3.886 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.200 0.800 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.101 0.899 43 H 0.049 0.951 44 H 0.044 0.956 45 H 0.037 0.963 46 H 0.027 0.973 47 H 0.044 0.956 48 H -0.005 1.005 49 H 0.251 0.749 50 H 0.062 0.938 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.653 11.624 -8.260 21.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.128 4.128 3 H 0.114 0.886 4 C -0.070 4.070 5 C -0.051 4.051 6 C -0.229 4.229 7 C -0.232 4.232 8 C -0.114 4.114 9 O -0.069 6.069 10 C 0.305 3.695 11 O -0.419 6.419 12 N -0.337 5.337 13 C -0.019 4.019 14 C -0.172 4.172 15 C -0.145 4.145 16 C -0.138 4.138 17 H 0.084 0.916 18 C 0.030 3.970 19 N -0.323 5.323 20 C 0.019 3.981 21 C -0.373 4.373 22 H 0.085 0.915 23 C -0.198 4.198 24 N -0.552 5.552 25 Si 0.730 3.270 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.218 1.218 29 C -0.008 4.008 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.217 0.783 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.119 0.881 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.045 0.955 47 H 0.062 0.938 48 H 0.014 0.986 49 H 0.061 0.939 50 H 0.080 0.920 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.109 10.886 -7.959 21.008 hybrid contribution 1.267 0.714 -0.346 1.495 sum -14.842 11.601 -8.305 20.587 Atomic orbital electron populations 1.21632 0.92211 1.03179 1.01855 1.21367 0.98556 1.00592 0.92333 0.88573 1.20106 1.02182 0.98357 0.86366 1.22251 0.86021 1.00222 0.96580 1.21630 1.02530 1.00298 0.98430 1.21835 0.95977 1.04192 1.01180 1.24013 1.01197 0.93625 0.92604 1.84046 1.37557 1.50987 1.34333 1.20431 0.81203 0.82550 0.85327 1.90678 1.55715 1.35913 1.59633 1.48198 1.14517 1.37200 1.33745 1.21887 0.92288 0.89926 0.97843 1.21963 0.95001 1.00353 0.99917 1.21522 1.01233 0.96477 0.95289 1.22291 0.92386 0.97678 1.01414 0.91607 1.20790 0.88095 0.94786 0.93348 1.43945 1.02274 1.09174 1.76858 1.20786 0.96384 0.83495 0.97387 1.19172 0.88696 1.11381 1.18098 0.91472 1.24993 0.98719 0.99605 0.96488 1.70074 1.29983 1.34222 1.20967 0.86261 0.85018 0.78381 0.77382 1.20398 1.21754 1.21818 1.21905 0.96115 0.95631 0.87182 0.92141 0.92135 0.91446 0.89150 0.88026 0.83353 0.83548 0.78281 0.90313 0.91438 0.91897 0.91298 0.88095 0.93232 0.93792 0.94432 0.95464 0.93773 0.98618 0.93909 0.91963 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 8.32 37.15 0.31 -1.10 16 2 C -0.11 -1.16 1.86 -91.78 -0.17 -1.33 16 3 H 0.10 0.88 6.39 -51.93 -0.33 0.55 16 4 C -0.03 -0.34 5.02 -27.88 -0.14 -0.48 16 5 C 0.00 -0.01 5.75 -35.62 -0.20 -0.21 16 6 C -0.21 -2.04 10.81 -39.70 -0.43 -2.47 16 7 C -0.21 -1.86 10.91 -39.71 -0.43 -2.29 16 8 C -0.05 -0.39 12.09 29.41 0.36 -0.04 16 9 O -0.17 -1.85 10.26 5.71 0.06 -1.79 16 10 C 0.52 7.32 6.82 -10.99 -0.07 7.24 16 11 O -0.54 -9.58 15.61 5.56 0.09 -9.49 16 12 N -0.60 -8.26 2.97 -172.50 -0.51 -8.78 16 13 C 0.10 1.17 6.07 -3.71 -0.02 1.14 16 14 C -0.13 -1.81 6.08 -26.61 -0.16 -1.98 16 15 C -0.11 -1.86 4.76 -26.69 -0.13 -1.98 16 16 C -0.12 -2.03 2.56 -90.28 -0.23 -2.27 16 17 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 18 C 0.16 3.11 5.22 -4.04 -0.02 3.09 16 19 N -0.60 -14.48 2.80 -181.12 -0.51 -14.98 16 20 C 0.16 4.02 9.01 59.85 0.54 4.56 16 21 C -0.24 -6.32 7.58 -15.06 -0.11 -6.43 16 22 H 0.07 1.72 7.84 -52.49 -0.41 1.31 16 23 C 0.00 0.00 5.13 -17.43 -0.09 -0.09 16 24 N -0.91 -25.57 10.57 55.49 0.59 -24.99 16 25 Si 0.90 21.23 29.57 -169.99 -5.03 16.20 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 C 0.11 1.74 5.73 -3.48 -0.02 1.72 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.59 7.24 -51.93 -0.38 0.21 16 32 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.10 1.05 7.72 -51.93 -0.40 0.65 16 35 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.20 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.08 0.71 5.17 -51.93 -0.27 0.44 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 42 H 0.10 2.21 6.26 -51.93 -0.33 1.88 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.04 0.84 8.03 -51.93 -0.42 0.43 16 45 H 0.04 0.70 7.86 -51.92 -0.41 0.29 16 46 H 0.03 0.72 7.41 -51.93 -0.38 0.33 16 47 H 0.04 1.16 7.19 -51.93 -0.37 0.79 16 48 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 49 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 50 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 51 H 0.09 1.41 7.03 -51.92 -0.37 1.04 16 LS Contribution 398.50 15.07 6.01 6.01 Total: -1.00 -30.86 398.50 -9.02 -39.88 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.67 Total: 0.86 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -1.04 Total: -2.91 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.43 Total: -48.75 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.15 Total: -11.29 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.86 -9.02 -39.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566744886.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.500 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds