Wall clock time and date at job start Tue Mar 31 2020 20:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46665 * 2 1 4 4 C 1.53004 * 109.47335 * 240.00254 * 2 1 3 5 5 C 1.50703 * 109.46915 * 64.99546 * 4 2 1 6 6 C 1.34521 * 125.78920 * 89.71962 * 5 4 2 7 7 C 1.41376 * 106.83642 * 179.88874 * 6 5 4 8 8 C 1.34510 * 106.84470 * 0.36916 * 7 6 5 9 9 O 1.34300 * 108.42228 * 359.77504 * 8 7 6 10 10 C 1.50693 * 109.47510 * 120.00139 * 2 1 3 11 11 O 1.21279 * 119.99945 * 22.85136 * 10 2 1 12 12 N 1.34777 * 120.00100 * 202.85850 * 10 2 1 13 13 C 1.46922 * 120.63150 * 4.92448 * 12 10 2 14 14 C 1.53190 * 108.77737 * 233.58922 * 13 12 10 15 15 C 1.53044 * 109.31190 * 305.36308 * 14 13 12 16 16 C 1.53038 * 109.53718 * 61.36622 * 15 14 13 17 17 H 1.09011 * 109.49582 * 58.58306 * 16 15 14 18 18 C 1.52992 * 109.49735 * 178.64610 * 16 15 14 19 19 N 1.46503 * 109.47589 * 295.00115 * 18 16 15 20 20 C 1.46500 * 119.99794 * 270.00158 * 19 18 16 21 21 C 1.36932 * 120.00003 * 89.99722 * 19 18 16 22 22 H 1.08002 * 120.00090 * 22.21623 * 21 19 18 23 23 C 1.38810 * 120.00070 * 202.21292 * 21 19 18 24 24 N 1.31612 * 120.00032 * 11.33902 * 23 21 19 25 25 Si 1.86803 * 119.99798 * 191.33956 * 23 21 19 26 26 H 1.48491 * 109.47175 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46778 * 120.00055 * 25 23 21 28 28 H 1.48503 * 109.46917 * 239.99879 * 25 23 21 29 29 C 1.46931 * 120.63185 * 184.64865 * 12 10 2 30 30 H 1.09000 * 109.47411 * 294.30942 * 1 2 3 31 31 H 1.08997 * 109.47421 * 54.31543 * 1 2 3 32 32 H 1.09005 * 109.46844 * 174.31887 * 1 2 3 33 33 H 1.09001 * 109.46696 * 304.99809 * 4 2 1 34 34 H 1.08994 * 109.47159 * 184.99596 * 4 2 1 35 35 H 1.07991 * 126.57806 * 0.02562 * 6 5 4 36 36 H 1.08010 * 126.57471 * 180.12606 * 7 6 5 37 37 H 1.08003 * 125.79002 * 179.79373 * 8 7 6 38 38 H 1.09002 * 109.58698 * 353.38153 * 13 12 10 39 39 H 1.09007 * 109.58557 * 113.80010 * 13 12 10 40 40 H 1.08997 * 109.49923 * 65.32030 * 14 13 12 41 41 H 1.09009 * 109.49849 * 185.41489 * 14 13 12 42 42 H 1.09000 * 109.45687 * 181.38687 * 15 14 13 43 43 H 1.08995 * 109.46352 * 301.35496 * 15 14 13 44 44 H 1.08999 * 109.47284 * 55.00261 * 18 16 15 45 45 H 1.09010 * 109.47217 * 174.99671 * 18 16 15 46 46 H 1.09004 * 109.47234 * 94.43912 * 20 19 18 47 47 H 1.08999 * 109.47004 * 214.43448 * 20 19 18 48 48 H 1.08996 * 109.47285 * 334.43365 * 20 19 18 49 49 H 0.97001 * 120.00423 * 179.97438 * 24 23 21 50 50 H 1.08999 * 109.58812 * 246.20314 * 29 12 10 51 51 H 1.09007 * 109.58427 * 6.62754 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 6 2.3630 1.0314 -3.0593 7 6 1.6191 1.4812 -4.1741 8 6 0.4835 0.7607 -4.2013 9 8 0.5023 -0.1003 -3.1708 10 6 2.0324 -0.7104 1.2304 11 8 1.3220 -1.5108 1.8010 12 7 3.2710 -0.4561 1.6968 13 6 4.1027 0.5875 1.0822 14 6 5.4533 -0.0228 0.6947 15 6 6.0812 -0.6842 1.9238 16 6 5.1690 -1.8072 2.4227 17 1 5.0229 -2.5379 1.6271 18 6 5.8134 -2.4897 3.6308 19 7 7.0516 -3.1528 3.2143 20 6 7.0190 -4.5436 2.7552 21 6 8.2394 -2.4726 3.2541 22 1 8.3487 -1.6142 3.9003 23 6 9.3029 -2.8864 2.4639 24 7 9.1113 -3.7823 1.5191 25 14 11.0063 -2.1714 2.7415 26 1 10.9561 -1.1913 3.8558 27 1 11.9514 -3.2638 3.0859 28 1 11.4654 -1.4915 1.5037 29 6 3.8130 -1.2132 2.8334 30 1 -0.3634 0.4230 0.9365 31 1 -0.3634 0.5994 -0.8347 32 1 -0.3633 -1.0227 -0.1017 33 1 1.6054 -1.7198 -1.2952 34 1 3.1263 -0.7993 -1.2056 35 1 3.3269 1.3978 -2.7384 36 1 1.9056 2.2575 -4.8683 37 1 -0.3089 0.8579 -4.9288 38 1 3.6067 0.9726 0.1913 39 1 4.2587 1.3974 1.7949 40 1 5.3046 -0.7702 -0.0846 41 1 6.1146 0.7614 0.3259 42 1 7.0536 -1.0979 1.6565 43 1 6.2067 0.0585 2.7115 44 1 6.0395 -1.7432 4.3922 45 1 5.1252 -3.2293 4.0403 46 1 6.9380 -4.5657 1.6684 47 1 7.9348 -5.0490 3.0616 48 1 6.1599 -5.0510 3.1939 49 1 9.8544 -4.0713 0.9666 50 1 3.9458 -0.5473 3.6860 51 1 3.1257 -2.0168 3.0982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566744886.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:34 Heat of formation + Delta-G solvation = -24.460374 kcal Electronic energy + Delta-G solvation = -30026.919140 eV Core-core repulsion = 26120.663730 eV Total energy + Delta-G solvation = -3906.255410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.47174 -41.42918 -39.03618 -37.17481 -36.25858 -34.20249 -33.79714 -32.99284 -31.96303 -30.91685 -28.04429 -27.66415 -27.22528 -26.51193 -24.35721 -23.48127 -22.64586 -22.49611 -21.26361 -20.84805 -19.63698 -18.70552 -18.57272 -18.00937 -17.20104 -16.88583 -16.57325 -16.24836 -15.91371 -15.60879 -15.50002 -15.01754 -14.95227 -14.88205 -14.65628 -14.21587 -14.14347 -13.83319 -13.66634 -13.61424 -13.45346 -13.27971 -13.04536 -12.97697 -12.87947 -12.76601 -12.53200 -12.34588 -12.29068 -12.09328 -11.96129 -11.90337 -11.83306 -11.67613 -11.47665 -11.11836 -10.81985 -10.69413 -10.54492 -9.60553 -9.33343 -8.72645 -7.75886 -5.22118 0.81096 1.47075 1.50041 1.52055 1.58801 1.79072 1.98654 2.19421 2.54909 3.37618 3.38289 3.68682 3.74741 3.85281 3.86743 3.95553 4.05899 4.15168 4.19306 4.25083 4.29236 4.34885 4.45771 4.50660 4.55526 4.61265 4.70280 4.75871 4.83667 4.84466 4.85752 4.90964 4.96773 4.98055 5.00586 5.02531 5.09979 5.21561 5.27690 5.29930 5.31993 5.37162 5.54774 5.63805 5.67152 5.70095 5.74552 5.79240 6.26951 6.38214 6.43991 7.13727 7.20762 7.92425 8.38077 9.28030 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015155 B = 0.002881 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.162620 B = 9716.963053 C =10656.526837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.096 4.096 3 H 0.122 0.878 4 C -0.027 4.027 5 C -0.021 4.021 6 C -0.212 4.212 7 C -0.226 4.226 8 C -0.045 4.045 9 O -0.192 6.192 10 C 0.515 3.485 11 O -0.583 6.583 12 N -0.605 5.605 13 C 0.107 3.893 14 C -0.128 4.128 15 C -0.103 4.103 16 C -0.102 4.102 17 H 0.033 0.967 18 C 0.154 3.846 19 N -0.614 5.614 20 C 0.179 3.821 21 C -0.236 4.236 22 H 0.072 0.928 23 C -0.054 4.054 24 N -0.940 5.940 25 Si 0.959 3.041 26 H -0.265 1.265 27 H -0.298 1.298 28 H -0.294 1.294 29 C 0.124 3.876 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.161 0.839 36 H 0.166 0.834 37 H 0.233 0.767 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.048 0.952 41 H 0.089 0.911 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.047 0.953 46 H 0.000 1.000 47 H 0.018 0.982 48 H 0.021 0.979 49 H 0.244 0.756 50 H 0.081 0.919 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.548 14.663 -8.642 23.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.117 4.117 3 H 0.140 0.860 4 C -0.064 4.064 5 C -0.070 4.070 6 C -0.231 4.231 7 C -0.245 4.245 8 C -0.112 4.112 9 O -0.088 6.088 10 C 0.304 3.696 11 O -0.463 6.463 12 N -0.336 5.336 13 C -0.015 4.015 14 C -0.166 4.166 15 C -0.140 4.140 16 C -0.124 4.124 17 H 0.052 0.948 18 C 0.027 3.973 19 N -0.337 5.337 20 C 0.034 3.966 21 C -0.367 4.367 22 H 0.090 0.910 23 C -0.249 4.249 24 N -0.588 5.588 25 Si 0.789 3.211 26 H -0.190 1.190 27 H -0.226 1.226 28 H -0.221 1.221 29 C 0.001 3.999 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.179 0.821 36 H 0.184 0.816 37 H 0.249 0.751 38 H 0.127 0.873 39 H 0.107 0.893 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.018 0.982 47 H 0.037 0.963 48 H 0.040 0.960 49 H 0.053 0.947 50 H 0.099 0.901 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.015 13.968 -8.328 23.536 hybrid contribution 1.479 -0.237 -0.235 1.517 sum -15.536 13.730 -8.564 22.432 Atomic orbital electron populations 1.21579 0.92173 1.02353 1.02260 1.21345 0.98493 1.01345 0.90558 0.85993 1.19978 1.02064 0.97688 0.86684 1.22162 0.86669 1.01113 0.97094 1.21917 1.02893 0.99757 0.98489 1.22168 0.96032 1.04920 1.01394 1.24757 1.01987 0.92378 0.92075 1.84036 1.37817 1.51857 1.35131 1.21016 0.80887 0.81964 0.85736 1.90661 1.56907 1.37736 1.60975 1.48273 1.14741 1.37352 1.33282 1.22057 0.90573 0.89287 0.99568 1.21887 0.96615 1.00410 0.97672 1.21375 0.98878 0.96453 0.97325 1.21998 0.93972 0.97153 0.99239 0.94819 1.20956 0.86756 0.95268 0.94298 1.44153 1.03525 1.09246 1.76779 1.20498 0.96082 0.84198 0.95814 1.19404 0.89332 1.10814 1.17105 0.91010 1.25668 1.01944 1.00523 0.96726 1.70244 1.30335 1.35999 1.22177 0.85307 0.80924 0.77566 0.77330 1.18952 1.22580 1.22087 1.21642 0.93997 0.95875 0.88393 0.92237 0.90885 0.93136 0.90713 0.87916 0.82109 0.81607 0.75068 0.87293 0.89264 0.93296 0.89298 0.93000 0.92122 0.92678 0.93478 0.98204 0.96306 0.96035 0.94696 0.90072 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.32 71.98 0.60 -1.95 16 2 C -0.10 -1.91 1.86 -11.54 -0.02 -1.93 16 3 H 0.12 1.79 6.39 -2.39 -0.02 1.77 16 4 C -0.03 -0.53 5.02 29.85 0.15 -0.38 16 5 C -0.02 -0.40 5.75 24.84 0.14 -0.26 16 6 C -0.21 -3.59 10.81 22.19 0.24 -3.35 16 7 C -0.23 -3.33 10.91 22.19 0.24 -3.09 16 8 C -0.05 -0.64 12.09 66.97 0.81 0.17 16 9 O -0.19 -3.80 10.26 -2.47 -0.03 -3.82 16 10 C 0.51 13.96 6.82 87.65 0.60 14.56 16 11 O -0.58 -20.58 15.61 -3.03 -0.05 -20.63 16 12 N -0.61 -15.44 2.97 -818.06 -2.43 -17.86 16 13 C 0.11 2.05 6.07 86.36 0.52 2.58 16 14 C -0.13 -3.22 6.08 30.67 0.19 -3.03 16 15 C -0.10 -3.47 4.76 30.62 0.15 -3.32 16 16 C -0.10 -3.57 2.56 -10.57 -0.03 -3.60 16 17 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 18 C 0.15 6.01 5.22 86.38 0.45 6.46 16 19 N -0.61 -30.04 2.80 -726.94 -2.04 -32.08 16 20 C 0.18 9.05 9.01 127.77 1.15 10.20 16 21 C -0.24 -12.33 7.58 84.03 0.64 -11.70 16 22 H 0.07 3.63 7.84 -2.91 -0.02 3.61 16 23 C -0.05 -2.95 5.13 84.86 0.44 -2.52 16 24 N -0.94 -54.84 10.57 21.65 0.23 -54.61 16 25 Si 0.96 44.15 29.57 68.60 2.03 46.17 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 28 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 29 C 0.12 3.64 5.73 86.51 0.50 4.14 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.29 7.24 -2.39 -0.02 1.27 16 32 H 0.05 1.18 8.06 -2.38 -0.02 1.16 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.10 2.00 7.72 -2.39 -0.02 1.98 16 35 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.23 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.11 1.49 5.17 -2.39 -0.01 1.48 16 39 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.05 2.30 6.26 -2.39 -0.01 2.28 16 43 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.05 2.03 8.03 -2.39 -0.02 2.02 16 45 H 0.05 1.74 7.86 -2.38 -0.02 1.72 16 46 H 0.00 -0.02 7.41 -2.38 -0.02 -0.04 16 47 H 0.02 1.01 7.19 -2.39 -0.02 0.99 16 48 H 0.02 0.94 7.84 -2.39 -0.02 0.92 16 49 H 0.24 13.96 8.31 -92.71 -0.77 13.19 16 50 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 51 H 0.07 2.32 7.03 -2.38 -0.02 2.30 16 Total: -1.00 -69.38 398.50 5.38 -64.00 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.90 Total: 15.85 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 6.76 Total: 2.97 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -4.23 Total: -104.55 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.07 Total: -24.45 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -69.38 5.38 -64.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566744886.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.540 kcal (2) G-P(sol) polarization free energy of solvation -69.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds