Wall clock time and date at job start Tue Mar 31 2020 20:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46936 * 2 1 4 4 C 1.53001 * 109.47236 * 119.99066 * 2 1 3 5 5 C 1.50695 * 109.47349 * 295.00696 * 4 2 1 6 6 C 1.34508 * 125.79235 * 89.99728 * 5 4 2 7 7 C 1.41384 * 106.84358 * 179.97438 * 6 5 4 8 8 C 1.34516 * 106.84041 * 0.02562 * 7 6 5 9 9 O 1.34305 * 125.78816 * 269.68945 * 5 4 2 10 10 C 1.50697 * 109.47454 * 239.99636 * 2 1 3 11 11 O 1.21279 * 119.99673 * 255.79481 * 10 2 1 12 12 N 1.34773 * 119.99946 * 75.79208 * 10 2 1 13 13 C 1.46928 * 120.62852 * 174.50185 * 12 10 2 14 14 C 1.53197 * 108.77423 * 233.62598 * 13 12 10 15 15 C 1.53039 * 109.31536 * 305.37066 * 14 13 12 16 16 C 1.53033 * 109.54027 * 61.36008 * 15 14 13 17 17 H 1.09001 * 109.49566 * 58.59153 * 16 15 14 18 18 C 1.53004 * 109.49881 * 178.68208 * 16 15 14 19 19 N 1.46503 * 109.47169 * 294.84236 * 18 16 15 20 20 C 1.46496 * 119.99842 * 269.99692 * 19 18 16 21 21 C 1.36937 * 119.99848 * 89.99701 * 19 18 16 22 22 H 1.07998 * 119.99766 * 18.15432 * 21 19 18 23 23 C 1.38813 * 119.99690 * 198.15342 * 21 19 18 24 24 N 1.31620 * 119.99983 * 15.92155 * 23 21 19 25 25 Si 1.86805 * 119.99672 * 195.92276 * 23 21 19 26 26 H 1.48495 * 109.47086 * 90.00025 * 25 23 21 27 27 H 1.48504 * 109.46752 * 209.99668 * 25 23 21 28 28 H 1.48493 * 109.47076 * 329.99728 * 25 23 21 29 29 C 1.46928 * 120.63078 * 354.52446 * 12 10 2 30 30 H 1.08996 * 109.47238 * 62.70256 * 1 2 3 31 31 H 1.08999 * 109.46702 * 182.69653 * 1 2 3 32 32 H 1.08999 * 109.47269 * 302.69644 * 1 2 3 33 33 H 1.09001 * 109.46622 * 55.00400 * 4 2 1 34 34 H 1.08997 * 109.47239 * 175.00019 * 4 2 1 35 35 H 1.08006 * 126.58132 * 359.96708 * 6 5 4 36 36 H 1.08002 * 126.58496 * 180.02562 * 7 6 5 37 37 H 1.07999 * 125.79135 * 180.02562 * 8 7 6 38 38 H 1.08989 * 109.59008 * 353.41831 * 13 12 10 39 39 H 1.09001 * 109.58690 * 113.84743 * 13 12 10 40 40 H 1.09005 * 109.49269 * 65.31865 * 14 13 12 41 41 H 1.08995 * 109.49904 * 185.41276 * 14 13 12 42 42 H 1.09000 * 109.45573 * 181.38990 * 15 14 13 43 43 H 1.09001 * 109.45714 * 301.35775 * 15 14 13 44 44 H 1.09001 * 109.46737 * 54.84049 * 18 16 15 45 45 H 1.08993 * 109.47178 * 174.84010 * 18 16 15 46 46 H 1.09005 * 109.47087 * 94.05198 * 20 19 18 47 47 H 1.09001 * 109.47360 * 214.04752 * 20 19 18 48 48 H 1.08994 * 109.47210 * 334.05384 * 20 19 18 49 49 H 0.97006 * 119.99285 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.58428 * 246.15806 * 29 12 10 51 51 H 1.08993 * 109.58791 * 6.58260 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7210 1.2494 5 6 1.6413 0.0573 2.4766 6 6 0.5008 -0.1006 3.1721 7 6 0.5395 0.8271 4.2384 8 6 1.7011 1.4968 4.1303 9 8 2.3669 1.0223 3.0648 10 6 2.0324 -0.7105 -1.2304 11 8 2.4775 -1.8351 -1.1418 12 7 1.9870 -0.0961 -2.4290 13 6 2.5814 -0.7258 -3.6160 14 6 3.5583 0.2622 -4.2613 15 6 2.8325 1.5792 -4.5454 16 6 2.3333 2.1825 -3.2305 17 1 3.1783 2.3474 -2.5620 18 6 1.6366 3.5153 -3.5122 19 7 2.6131 4.4771 -4.0297 20 6 3.3527 5.3395 -3.1048 21 6 2.8345 4.5698 -5.3779 22 1 2.1112 4.1691 -6.0726 23 6 3.9884 5.1790 -5.8514 24 7 5.0046 5.3841 -5.0404 25 14 4.0990 5.7075 -7.6397 26 1 3.6053 7.1014 -7.7753 27 1 5.5123 5.6370 -8.0901 28 1 3.2675 4.8044 -8.4751 29 6 1.3425 1.2164 -2.5736 30 1 -0.3633 0.4713 -0.9132 31 1 -0.3633 -1.0265 0.0483 32 1 -0.3634 0.5551 0.8648 33 1 1.6054 -1.7196 1.2953 34 1 3.1263 -0.7993 1.2057 35 1 -0.2924 -0.8014 2.9573 36 1 -0.2181 0.9706 4.9946 37 1 2.0428 2.2795 4.7913 38 1 3.1161 -1.6287 -3.3215 39 1 1.7954 -0.9796 -4.3273 40 1 4.3918 0.4451 -3.5829 41 1 3.9339 -0.1551 -5.1955 42 1 3.5190 2.2755 -5.0271 43 1 1.9843 1.3917 -5.2037 44 1 0.8488 3.3646 -4.2503 45 1 1.2016 3.8999 -2.5898 46 1 4.3076 4.8746 -2.8594 47 1 3.5299 6.3075 -3.5736 48 1 2.7712 5.4780 -2.1935 49 1 5.8108 5.8101 -5.3713 50 1 0.4555 1.1209 -3.1998 51 1 1.0598 1.5948 -1.5913 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566744887.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:38 Heat of formation + Delta-G solvation = -23.927759 kcal Electronic energy + Delta-G solvation = -30000.130876 eV Core-core repulsion = 26093.898562 eV Total energy + Delta-G solvation = -3906.232314 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.47382 -41.45632 -39.07653 -37.14124 -36.26115 -34.15976 -33.79504 -33.23869 -31.95569 -30.73603 -27.96198 -27.59412 -27.31500 -26.54340 -24.32014 -23.69401 -22.58947 -22.31794 -21.25227 -20.83265 -19.86601 -18.69956 -18.49739 -17.75545 -17.29848 -16.79683 -16.69933 -16.34765 -15.83837 -15.56807 -15.34693 -15.22249 -15.03761 -14.90765 -14.69497 -14.25525 -13.97534 -13.72712 -13.68952 -13.64982 -13.42149 -13.25108 -13.10578 -12.99816 -12.83360 -12.75160 -12.52773 -12.31558 -12.30441 -12.05971 -11.97458 -11.92158 -11.86261 -11.69900 -11.40599 -11.19956 -10.77955 -10.66441 -10.51022 -9.62088 -9.32632 -8.75211 -7.76680 -5.17254 0.82720 1.47572 1.49712 1.56075 1.56702 1.75054 1.97525 2.22799 2.55584 3.35151 3.40683 3.69713 3.73869 3.84446 3.93695 3.98498 4.07221 4.14667 4.20304 4.24567 4.31088 4.32033 4.42742 4.53337 4.60420 4.62781 4.74379 4.75229 4.78877 4.87598 4.88484 4.89622 4.98470 4.99128 5.00931 5.08573 5.10066 5.19556 5.27512 5.27907 5.28877 5.40260 5.55173 5.61403 5.68505 5.70036 5.73882 5.79157 6.28139 6.36682 6.41879 7.10956 7.21476 7.95785 8.37773 9.27653 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014659 B = 0.002949 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.567844 B = 9493.566014 C =10692.445583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.097 0.903 4 C -0.016 4.016 5 C -0.026 4.026 6 C -0.206 4.206 7 C -0.223 4.223 8 C -0.049 4.049 9 O -0.199 6.199 10 C 0.519 3.481 11 O -0.582 6.582 12 N -0.605 5.605 13 C 0.118 3.882 14 C -0.125 4.125 15 C -0.101 4.101 16 C -0.110 4.110 17 H 0.036 0.964 18 C 0.154 3.846 19 N -0.614 5.614 20 C 0.179 3.821 21 C -0.235 4.235 22 H 0.075 0.925 23 C -0.058 4.058 24 N -0.940 5.940 25 Si 0.955 3.045 26 H -0.291 1.291 27 H -0.303 1.303 28 H -0.267 1.267 29 C 0.116 3.884 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.163 0.837 36 H 0.169 0.831 37 H 0.230 0.770 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.038 0.962 41 H 0.079 0.921 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.062 0.938 46 H -0.006 1.006 47 H 0.018 0.982 48 H 0.029 0.971 49 H 0.242 0.758 50 H 0.092 0.908 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.692 -10.963 14.773 22.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.115 0.885 4 C -0.053 4.053 5 C -0.076 4.076 6 C -0.225 4.225 7 C -0.242 4.242 8 C -0.116 4.116 9 O -0.097 6.097 10 C 0.309 3.691 11 O -0.463 6.463 12 N -0.336 5.336 13 C -0.004 4.004 14 C -0.164 4.164 15 C -0.139 4.139 16 C -0.132 4.132 17 H 0.055 0.945 18 C 0.028 3.972 19 N -0.337 5.337 20 C 0.034 3.966 21 C -0.365 4.365 22 H 0.093 0.907 23 C -0.252 4.252 24 N -0.588 5.588 25 Si 0.785 3.215 26 H -0.218 1.218 27 H -0.231 1.231 28 H -0.192 1.192 29 C -0.007 4.007 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.086 0.914 35 H 0.181 0.819 36 H 0.187 0.813 37 H 0.246 0.754 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.012 0.988 47 H 0.037 0.963 48 H 0.048 0.952 49 H 0.052 0.948 50 H 0.110 0.890 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.059 -11.375 14.657 22.128 hybrid contribution 0.993 0.624 -0.977 1.526 sum -11.067 -10.751 13.680 20.621 Atomic orbital electron populations 1.21902 0.90265 1.03631 1.04143 1.21253 0.99802 1.00376 0.90784 0.88493 1.19831 1.01845 0.97243 0.86424 1.22412 0.92977 0.93790 0.98377 1.21868 0.99156 1.03938 0.97524 1.22179 1.00131 0.99637 1.02270 1.24751 0.93669 1.02495 0.90693 1.84037 1.45144 1.43731 1.36742 1.20920 0.77444 0.85808 0.84945 1.90645 1.48881 1.20356 1.86425 1.48204 1.56574 1.20613 1.08242 1.21577 0.96689 0.95622 0.86554 1.21844 0.97754 0.96268 1.00492 1.21371 1.00044 0.95323 0.97168 1.22027 0.98097 0.96576 0.96469 0.94528 1.21003 0.91012 0.87347 0.97857 1.44212 1.46173 1.40248 1.03060 1.20500 0.92802 0.93269 0.90076 1.19430 1.01062 1.32564 0.83442 0.90695 1.25552 0.95414 1.03579 1.00664 1.70271 1.04296 1.48572 1.35697 0.85423 0.76072 0.78350 0.81623 1.21825 1.23064 1.19167 1.22031 0.95246 0.80688 1.02732 0.90634 0.91397 0.90050 0.87521 0.91353 0.81936 0.81340 0.75399 0.90393 0.89731 0.94341 0.90278 0.93133 0.91873 0.92434 0.92013 0.98787 0.96297 0.95248 0.94824 0.89027 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.46 71.98 0.61 -1.61 16 2 C -0.10 -2.13 1.85 -11.54 -0.02 -2.15 16 3 H 0.10 2.12 7.08 -2.38 -0.02 2.10 16 4 C -0.02 -0.34 4.56 29.85 0.14 -0.20 16 5 C -0.03 -0.54 6.05 24.83 0.15 -0.39 16 6 C -0.21 -3.58 9.48 22.19 0.21 -3.37 16 7 C -0.22 -3.48 10.91 22.19 0.24 -3.24 16 8 C -0.05 -0.82 12.09 66.97 0.81 -0.01 16 9 O -0.20 -4.58 10.65 -2.52 -0.03 -4.61 16 10 C 0.52 14.04 6.91 87.66 0.61 14.64 16 11 O -0.58 -19.34 15.53 -3.02 -0.05 -19.38 16 12 N -0.61 -15.75 2.97 -818.92 -2.43 -18.18 16 13 C 0.12 3.13 6.42 86.36 0.55 3.68 16 14 C -0.13 -3.83 6.08 30.67 0.19 -3.64 16 15 C -0.10 -3.51 4.77 30.62 0.15 -3.37 16 16 C -0.11 -3.54 2.54 -10.72 -0.03 -3.56 16 17 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 18 C 0.15 5.38 5.22 86.38 0.45 5.83 16 19 N -0.61 -28.62 2.81 -726.94 -2.04 -30.67 16 20 C 0.18 8.61 9.02 127.77 1.15 9.76 16 21 C -0.23 -12.03 7.61 84.03 0.64 -11.39 16 22 H 0.08 3.71 7.86 -2.91 -0.02 3.68 16 23 C -0.06 -3.15 5.05 84.86 0.43 -2.72 16 24 N -0.94 -54.99 10.60 21.65 0.23 -54.76 16 25 Si 0.96 44.41 29.58 68.60 2.03 46.43 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 27 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 28 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 29 C 0.12 2.70 4.65 86.36 0.40 3.10 16 30 H 0.07 1.06 6.27 -2.39 -0.01 1.05 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.15 6.58 -2.39 -0.02 1.14 16 33 H 0.11 2.15 8.08 -2.39 -0.02 2.13 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.23 2.05 8.06 -2.91 -0.02 2.02 16 38 H 0.08 2.21 7.04 -2.39 -0.02 2.19 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.05 2.28 6.27 -2.39 -0.01 2.27 16 43 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.06 1.89 8.03 -2.39 -0.02 1.87 16 45 H 0.06 1.87 7.86 -2.39 -0.02 1.85 16 46 H -0.01 -0.33 7.52 -2.38 -0.02 -0.35 16 47 H 0.02 0.98 7.01 -2.39 -0.02 0.97 16 48 H 0.03 1.19 7.85 -2.39 -0.02 1.17 16 49 H 0.24 14.04 8.31 -92.70 -0.77 13.26 16 50 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 51 H 0.10 2.01 4.78 -2.39 -0.01 2.00 16 Total: -1.00 -68.22 394.96 5.28 -62.94 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.90 Total: 16.88 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 6.67 Total: 1.35 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -4.25 Total: -103.62 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.07 Total: -23.99 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -68.22 5.28 -62.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566744887.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.011 kcal (2) G-P(sol) polarization free energy of solvation -68.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds