Wall clock time and date at job start Tue Mar 31 2020 17:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47054 * 2 1 4 4 C 1.53006 * 109.47034 * 240.00159 * 2 1 3 5 5 C 1.53004 * 109.46894 * 299.99984 * 4 2 1 6 6 C 1.53002 * 109.46946 * 299.99762 * 5 4 2 7 7 C 1.52997 * 109.47236 * 60.00194 * 6 5 4 8 8 C 1.52992 * 109.47389 * 120.00114 * 2 1 3 9 9 C 1.52997 * 109.47176 * 299.99835 * 8 2 1 10 10 N 1.46503 * 109.47162 * 295.02977 * 9 8 2 11 11 C 1.36943 * 119.99882 * 184.97923 * 10 9 8 12 12 H 1.07994 * 119.99840 * 359.97438 * 11 10 9 13 13 C 1.38807 * 119.99484 * 180.02562 * 11 10 9 14 14 N 1.31612 * 120.00440 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99325 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47321 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46781 * 120.00360 * 15 13 11 18 18 H 1.48503 * 109.46902 * 239.99700 * 15 13 11 19 19 N 1.46500 * 109.47196 * 180.02562 * 8 2 1 20 20 C 1.34775 * 119.99996 * 184.36589 * 19 8 2 21 21 O 1.21288 * 120.00347 * 354.61547 * 20 19 8 22 22 C 1.50703 * 120.00041 * 174.60859 * 20 19 8 23 23 C 1.53002 * 109.47076 * 179.97438 * 22 20 19 24 24 C 1.50703 * 109.47076 * 180.02562 * 23 22 20 25 25 C 1.41381 * 126.58269 * 269.71908 * 24 23 22 26 26 C 1.34516 * 106.83948 * 179.83247 * 25 24 23 27 27 O 1.34305 * 108.42026 * 0.43100 * 26 25 24 28 28 C 1.34300 * 109.47621 * 359.71810 * 27 26 25 29 29 H 1.09001 * 109.46930 * 299.99889 * 1 2 3 30 30 H 1.08996 * 109.47616 * 59.99782 * 1 2 3 31 31 H 1.09000 * 109.47054 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46956 * 59.99426 * 4 2 1 33 33 H 1.08995 * 109.47204 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.46986 * 179.97438 * 5 4 2 35 35 H 1.08995 * 109.47469 * 59.99826 * 5 4 2 36 36 H 1.08995 * 109.47089 * 300.00297 * 6 5 4 37 37 H 1.09000 * 109.46983 * 180.02562 * 6 5 4 38 38 H 1.08996 * 109.47441 * 179.97438 * 7 6 5 39 39 H 1.09008 * 109.46962 * 59.99730 * 7 6 5 40 40 H 1.09005 * 109.46895 * 55.03077 * 9 8 2 41 41 H 1.08998 * 109.47243 * 175.02969 * 9 8 2 42 42 H 0.96989 * 119.99929 * 4.97583 * 10 9 8 43 43 H 0.96998 * 120.00230 * 179.97438 * 14 13 11 44 44 H 0.97002 * 120.00037 * 4.36040 * 19 8 2 45 45 H 1.09001 * 109.47417 * 300.00438 * 22 20 19 46 46 H 1.09003 * 109.46942 * 60.00493 * 22 20 19 47 47 H 1.08993 * 109.47669 * 300.00275 * 23 22 20 48 48 H 1.09003 * 109.46677 * 60.00521 * 23 22 20 49 49 H 1.08004 * 126.58034 * 359.97438 * 25 24 23 50 50 H 1.07996 * 125.78969 * 180.11403 * 26 25 24 51 51 H 1.08005 * 125.78944 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5299 -2.1638 -1.2493 6 6 2.0400 -2.8850 -0.0001 7 6 1.5301 -2.1638 1.2492 8 6 2.0400 -0.7212 1.2491 9 6 1.5301 0.0000 2.4984 10 7 2.1137 1.3424 2.5597 11 6 1.8819 2.1407 3.6480 12 1 1.2686 1.7808 4.4608 13 6 2.4344 3.4127 3.7058 14 7 3.1815 3.8514 2.7150 15 14 2.1176 4.5019 5.1900 16 1 1.2526 3.7806 6.1578 17 1 3.4094 4.8430 5.8383 18 1 1.4387 5.7484 4.7533 19 7 3.5050 -0.7207 1.2494 20 6 4.1789 -1.3794 2.2129 21 8 3.5766 -1.8901 3.1335 22 6 5.6810 -1.4817 2.1463 23 6 6.1922 -2.2734 3.3517 24 6 7.6943 -2.3751 3.2854 25 6 8.4428 -3.3982 2.6592 26 6 9.7413 -3.0950 2.8362 27 8 9.8186 -1.9541 3.5406 28 6 8.5803 -1.5130 3.8157 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6765 -0.2074 -2.1393 33 1 3.1299 -0.7209 -1.2496 34 1 1.8928 -2.6775 -2.1395 35 1 0.4399 -2.1638 -1.2492 36 1 3.1299 -2.8850 -0.0001 37 1 1.6770 -3.9128 -0.0003 38 1 1.8931 -2.6778 2.1392 39 1 0.4400 -2.1638 1.2492 40 1 0.4437 0.0777 2.4550 41 1 1.8189 -0.5627 3.3861 42 1 2.6642 1.6656 1.8296 43 1 3.5673 4.7404 2.7552 44 1 3.9900 -0.2462 0.5561 45 1 5.9702 -1.9913 1.2272 46 1 6.1142 -0.4815 2.1589 47 1 5.9032 -1.7634 4.2705 48 1 5.7591 -3.2736 3.3395 49 1 8.0477 -4.2570 2.1369 50 1 10.5796 -3.6738 2.4775 51 1 8.3371 -0.6181 4.3693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568035459.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:42 Heat of formation + Delta-G solvation = -28.417797 kcal Electronic energy + Delta-G solvation = -30416.980313 eV Core-core repulsion = 26510.553296 eV Total energy + Delta-G solvation = -3906.427017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.57876 -40.52289 -38.11197 -34.87137 -34.52745 -33.17999 -31.90066 -31.59820 -30.84196 -29.63759 -29.01978 -26.54113 -25.06016 -24.35475 -22.86315 -22.14341 -21.63798 -20.71143 -20.19640 -19.55111 -18.20868 -17.52617 -17.13562 -16.69594 -15.93876 -15.58541 -15.33252 -15.23699 -14.74508 -14.45680 -14.13394 -14.05137 -13.43252 -13.28993 -13.18776 -12.99718 -12.86474 -12.76954 -12.44374 -12.30974 -12.25437 -11.83977 -11.81939 -11.60792 -11.57987 -11.35435 -11.12168 -10.87002 -10.81620 -10.75576 -10.66809 -10.29277 -10.04823 -9.91081 -9.79403 -9.68483 -9.56050 -9.08251 -8.72844 -8.55097 -8.38196 -6.78841 -5.70667 -2.95838 1.72213 2.53529 3.10684 3.18384 3.46420 3.52987 3.54858 3.66455 4.65193 4.73457 4.81313 4.87204 4.91862 4.95042 5.03491 5.22815 5.30438 5.31724 5.37326 5.39513 5.55779 5.57751 5.65122 5.69423 5.72236 5.75158 5.79727 5.86161 5.90357 5.92416 6.06254 6.09607 6.13398 6.20739 6.23080 6.24894 6.28387 6.33639 6.36549 6.47229 6.49582 6.58466 6.62318 6.72963 6.79028 7.04673 7.07783 7.23414 7.78507 8.05485 8.49412 8.78276 9.60874 10.20292 10.55927 11.52718 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007514 B = 0.004414 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3725.651124 B = 6342.574836 C = 9283.103739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.084 0.916 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.111 4.111 7 C -0.131 4.131 8 C 0.183 3.817 9 C 0.140 3.860 10 N -0.723 5.723 11 C -0.226 4.226 12 H 0.068 0.932 13 C -0.016 4.016 14 N -0.937 5.937 15 Si 0.902 3.098 16 H -0.281 1.281 17 H -0.293 1.293 18 H -0.293 1.293 19 N -0.709 5.709 20 C 0.522 3.478 21 O -0.537 6.537 22 C -0.135 4.135 23 C -0.033 4.033 24 C -0.175 4.175 25 C -0.208 4.208 26 C -0.050 4.050 27 O -0.180 6.180 28 C -0.038 4.038 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.021 0.979 41 H 0.044 0.956 42 H 0.381 0.619 43 H 0.252 0.748 44 H 0.395 0.605 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.146 0.854 50 H 0.199 0.801 51 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.414 -15.459 -8.378 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.102 0.898 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.149 4.149 7 C -0.169 4.169 8 C 0.097 3.903 9 C 0.012 3.988 10 N -0.367 5.367 11 C -0.357 4.357 12 H 0.086 0.914 13 C -0.212 4.212 14 N -0.587 5.587 15 Si 0.734 3.266 16 H -0.207 1.207 17 H -0.221 1.221 18 H -0.221 1.221 19 N -0.360 5.360 20 C 0.308 3.692 21 O -0.415 6.415 22 C -0.175 4.175 23 C -0.071 4.071 24 C -0.177 4.177 25 C -0.227 4.227 26 C -0.117 4.117 27 O -0.075 6.075 28 C -0.106 4.106 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.039 0.961 41 H 0.062 0.938 42 H 0.214 0.786 43 H 0.062 0.938 44 H 0.229 0.771 45 H 0.104 0.896 46 H 0.111 0.889 47 H 0.099 0.901 48 H 0.095 0.905 49 H 0.163 0.837 50 H 0.216 0.784 51 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 6.163 -15.651 -7.466 18.403 hybrid contribution 0.202 1.064 0.092 1.087 sum 6.365 -14.587 -7.373 17.540 Atomic orbital electron populations 1.21917 0.94487 1.01539 1.02337 1.21252 0.96749 0.99983 0.92929 0.89781 1.21585 1.00278 0.95564 0.97733 1.21569 1.00902 0.95733 0.97453 1.21434 1.00640 0.98203 0.94639 1.21930 1.00682 0.95358 0.98960 1.20482 0.79181 0.94681 0.95944 1.21156 0.95410 0.87277 0.94996 1.42203 1.60588 1.11393 1.22548 1.19284 1.24567 0.94870 0.97004 0.91424 1.24643 1.00781 0.97673 0.98065 1.69648 1.38582 1.18520 1.31931 0.86168 0.77252 0.80701 0.82460 1.20666 1.22070 1.22062 1.45896 1.06781 1.53569 1.29728 1.20355 0.89395 0.77918 0.81518 1.90621 1.70079 1.47831 1.32920 1.21630 0.92911 1.02753 1.00176 1.19671 0.87746 1.01339 0.98299 1.20555 0.97026 0.96643 1.03448 1.21767 0.93065 1.01914 1.05991 1.23971 0.98939 0.88635 1.00157 1.84065 1.31246 1.34884 1.57346 1.24019 0.80524 1.01405 1.04646 0.91328 0.93036 0.92543 0.92142 0.92307 0.92787 0.91811 0.92383 0.92738 0.89687 0.91324 0.96125 0.93821 0.78554 0.93846 0.77119 0.89577 0.88944 0.90117 0.90452 0.83653 0.78443 0.78019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.15 37.15 0.30 -1.73 16 2 C -0.09 -1.31 2.15 -90.62 -0.20 -1.51 16 3 H 0.08 1.45 7.08 -51.93 -0.37 1.08 16 4 C -0.11 -1.33 5.28 -26.73 -0.14 -1.47 16 5 C -0.12 -1.28 5.65 -26.73 -0.15 -1.44 16 6 C -0.11 -1.33 5.77 -26.73 -0.15 -1.49 16 7 C -0.13 -1.90 4.18 -26.73 -0.11 -2.01 16 8 C 0.18 2.94 0.09 -131.82 -0.01 2.93 16 9 C 0.14 2.93 4.72 -4.04 -0.02 2.91 16 10 N -0.72 -18.05 5.19 -59.91 -0.31 -18.36 16 11 C -0.23 -6.40 9.99 -15.06 -0.15 -6.55 16 12 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 13 C -0.02 -0.48 5.50 -17.44 -0.10 -0.57 16 14 N -0.94 -28.00 13.06 55.49 0.72 -27.28 16 15 Si 0.90 22.84 29.55 -169.99 -5.02 17.81 16 16 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 18 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 19 N -0.71 -10.89 3.49 -47.61 -0.17 -11.05 16 20 C 0.52 8.51 7.16 -10.98 -0.08 8.43 16 21 O -0.54 -10.49 12.28 5.55 0.07 -10.42 16 22 C -0.13 -1.76 5.68 -27.88 -0.16 -1.91 16 23 C -0.03 -0.43 5.02 -27.88 -0.14 -0.57 16 24 C -0.18 -2.12 5.42 -104.74 -0.57 -2.68 16 25 C -0.21 -2.20 10.87 -39.70 -0.43 -2.63 16 26 C -0.05 -0.48 12.09 29.42 0.36 -0.12 16 27 O -0.18 -2.10 10.65 5.71 0.06 -2.03 16 28 C -0.04 -0.45 12.01 29.42 0.35 -0.10 16 29 H 0.07 1.11 6.32 -51.93 -0.33 0.79 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.70 4.81 -51.93 -0.25 0.45 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.66 6.95 -51.93 -0.36 0.30 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.68 6.43 -51.93 -0.33 0.34 16 36 H 0.06 0.71 7.54 -51.93 -0.39 0.32 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.43 6.05 -51.93 -0.31 1.11 16 39 H 0.07 0.96 6.43 -51.92 -0.33 0.62 16 40 H 0.02 0.44 6.18 -51.93 -0.32 0.12 16 41 H 0.04 1.04 6.45 -51.93 -0.33 0.70 16 42 H 0.38 9.75 6.45 -40.82 -0.26 9.48 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.39 5.44 7.48 -40.82 -0.31 5.13 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 48 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 49 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 50 H 0.20 1.12 8.06 -52.49 -0.42 0.70 16 51 H 0.20 2.00 8.06 -52.48 -0.42 1.57 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -32.86 388.80 -8.28 -41.14 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -8.10 Total: 14.83 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -1.40 Total: -10.51 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.25 Total: -56.69 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.13 Total: -12.46 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.86 -8.28 -41.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568035459.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.725 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds