Wall clock time and date at job start Tue Mar 31 2020 17:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47054 * 2 1 4 4 C 1.53006 * 109.47034 * 240.00159 * 2 1 3 5 5 C 1.53004 * 109.46894 * 299.99984 * 4 2 1 6 6 C 1.53002 * 109.46946 * 299.99762 * 5 4 2 7 7 C 1.52997 * 109.47236 * 60.00194 * 6 5 4 8 8 C 1.52992 * 109.47389 * 120.00114 * 2 1 3 9 9 C 1.52997 * 109.47176 * 299.99835 * 8 2 1 10 10 N 1.46503 * 109.47162 * 295.02977 * 9 8 2 11 11 C 1.36943 * 119.99882 * 184.97923 * 10 9 8 12 12 H 1.07994 * 119.99840 * 359.97438 * 11 10 9 13 13 C 1.38807 * 119.99484 * 180.02562 * 11 10 9 14 14 N 1.31612 * 120.00440 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99325 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47321 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46781 * 120.00360 * 15 13 11 18 18 H 1.48503 * 109.46902 * 239.99700 * 15 13 11 19 19 N 1.46500 * 109.47196 * 180.02562 * 8 2 1 20 20 C 1.34775 * 119.99996 * 184.36589 * 19 8 2 21 21 O 1.21288 * 120.00347 * 354.61547 * 20 19 8 22 22 C 1.50703 * 120.00041 * 174.60859 * 20 19 8 23 23 C 1.53002 * 109.47076 * 179.97438 * 22 20 19 24 24 C 1.50703 * 109.47076 * 180.02562 * 23 22 20 25 25 C 1.41381 * 126.58269 * 269.71908 * 24 23 22 26 26 C 1.34516 * 106.83948 * 179.83247 * 25 24 23 27 27 O 1.34305 * 108.42026 * 0.43100 * 26 25 24 28 28 C 1.34300 * 109.47621 * 359.71810 * 27 26 25 29 29 H 1.09001 * 109.46930 * 299.99889 * 1 2 3 30 30 H 1.08996 * 109.47616 * 59.99782 * 1 2 3 31 31 H 1.09000 * 109.47054 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46956 * 59.99426 * 4 2 1 33 33 H 1.08995 * 109.47204 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.46986 * 179.97438 * 5 4 2 35 35 H 1.08995 * 109.47469 * 59.99826 * 5 4 2 36 36 H 1.08995 * 109.47089 * 300.00297 * 6 5 4 37 37 H 1.09000 * 109.46983 * 180.02562 * 6 5 4 38 38 H 1.08996 * 109.47441 * 179.97438 * 7 6 5 39 39 H 1.09008 * 109.46962 * 59.99730 * 7 6 5 40 40 H 1.09005 * 109.46895 * 55.03077 * 9 8 2 41 41 H 1.08998 * 109.47243 * 175.02969 * 9 8 2 42 42 H 0.96989 * 119.99929 * 4.97583 * 10 9 8 43 43 H 0.96998 * 120.00230 * 179.97438 * 14 13 11 44 44 H 0.97002 * 120.00037 * 4.36040 * 19 8 2 45 45 H 1.09001 * 109.47417 * 300.00438 * 22 20 19 46 46 H 1.09003 * 109.46942 * 60.00493 * 22 20 19 47 47 H 1.08993 * 109.47669 * 300.00275 * 23 22 20 48 48 H 1.09003 * 109.46677 * 60.00521 * 23 22 20 49 49 H 1.08004 * 126.58034 * 359.97438 * 25 24 23 50 50 H 1.07996 * 125.78969 * 180.11403 * 26 25 24 51 51 H 1.08005 * 125.78944 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5299 -2.1638 -1.2493 6 6 2.0400 -2.8850 -0.0001 7 6 1.5301 -2.1638 1.2492 8 6 2.0400 -0.7212 1.2491 9 6 1.5301 0.0000 2.4984 10 7 2.1137 1.3424 2.5597 11 6 1.8819 2.1407 3.6480 12 1 1.2686 1.7808 4.4608 13 6 2.4344 3.4127 3.7058 14 7 3.1815 3.8514 2.7150 15 14 2.1176 4.5019 5.1900 16 1 1.2526 3.7806 6.1578 17 1 3.4094 4.8430 5.8383 18 1 1.4387 5.7484 4.7533 19 7 3.5050 -0.7207 1.2494 20 6 4.1789 -1.3794 2.2129 21 8 3.5766 -1.8901 3.1335 22 6 5.6810 -1.4817 2.1463 23 6 6.1922 -2.2734 3.3517 24 6 7.6943 -2.3751 3.2854 25 6 8.4428 -3.3982 2.6592 26 6 9.7413 -3.0950 2.8362 27 8 9.8186 -1.9541 3.5406 28 6 8.5803 -1.5130 3.8157 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6765 -0.2074 -2.1393 33 1 3.1299 -0.7209 -1.2496 34 1 1.8928 -2.6775 -2.1395 35 1 0.4399 -2.1638 -1.2492 36 1 3.1299 -2.8850 -0.0001 37 1 1.6770 -3.9128 -0.0003 38 1 1.8931 -2.6778 2.1392 39 1 0.4400 -2.1638 1.2492 40 1 0.4437 0.0777 2.4550 41 1 1.8189 -0.5627 3.3861 42 1 2.6642 1.6656 1.8296 43 1 3.5673 4.7404 2.7552 44 1 3.9900 -0.2462 0.5561 45 1 5.9702 -1.9913 1.2272 46 1 6.1142 -0.4815 2.1589 47 1 5.9032 -1.7634 4.2705 48 1 5.7591 -3.2736 3.3395 49 1 8.0477 -4.2570 2.1369 50 1 10.5796 -3.6738 2.4775 51 1 8.3371 -0.6181 4.3693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568035459.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:41 Heat of formation + Delta-G solvation = -48.162244 kcal Electronic energy + Delta-G solvation = -30417.836496 eV Core-core repulsion = 26510.553296 eV Total energy + Delta-G solvation = -3907.283200 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.42031 -41.80480 -39.36866 -36.43965 -35.74364 -34.66899 -33.40092 -32.67933 -32.17656 -31.07975 -29.95071 -27.86357 -26.70833 -25.43908 -24.60332 -23.34594 -22.42870 -21.97227 -21.16094 -20.77823 -19.44567 -19.20966 -18.47632 -17.82700 -16.93180 -16.80054 -16.71831 -16.48670 -16.24097 -15.63708 -15.47237 -15.22764 -15.04107 -14.73194 -14.57411 -14.26642 -14.09871 -13.63810 -13.54917 -13.45627 -13.42093 -13.16492 -13.05769 -12.91859 -12.82171 -12.78150 -12.76121 -12.41760 -12.28858 -12.05572 -11.92953 -11.84845 -11.78006 -11.28718 -11.10594 -10.92275 -10.84083 -10.60924 -10.26963 -9.75686 -9.41448 -8.90912 -7.94517 -5.19404 0.89279 1.43458 1.44067 1.53939 1.67776 1.87003 2.31616 2.43609 2.55771 3.38567 3.64786 3.80116 3.85559 3.90435 3.93720 4.05270 4.09527 4.21976 4.25613 4.33846 4.40585 4.43155 4.50365 4.56892 4.60738 4.69465 4.75714 4.82654 4.84647 4.86241 4.90814 4.93163 4.99683 5.13040 5.17125 5.18065 5.20739 5.25532 5.26094 5.31841 5.35624 5.46001 5.47408 5.47635 5.56472 5.63019 5.64646 5.85463 6.24294 6.28701 6.78322 7.36074 7.49382 8.12068 8.40479 9.28594 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007514 B = 0.004414 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3725.651124 B = 6342.574836 C = 9283.103739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 H 0.053 0.947 4 C -0.108 4.108 5 C -0.113 4.113 6 C -0.105 4.105 7 C -0.125 4.125 8 C 0.190 3.810 9 C 0.142 3.858 10 N -0.725 5.725 11 C -0.239 4.239 12 H 0.059 0.941 13 C -0.067 4.067 14 N -0.962 5.962 15 Si 0.964 3.036 16 H -0.275 1.275 17 H -0.293 1.293 18 H -0.290 1.290 19 N -0.704 5.704 20 C 0.514 3.486 21 O -0.574 6.574 22 C -0.124 4.124 23 C -0.024 4.024 24 C -0.188 4.188 25 C -0.223 4.223 26 C -0.040 4.040 27 O -0.191 6.191 28 C -0.054 4.054 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.019 0.981 41 H 0.013 0.987 42 H 0.377 0.623 43 H 0.250 0.750 44 H 0.404 0.596 45 H 0.116 0.884 46 H 0.090 0.910 47 H 0.055 0.945 48 H 0.073 0.927 49 H 0.163 0.837 50 H 0.238 0.762 51 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.148 -16.752 -10.383 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 H 0.072 0.928 4 C -0.146 4.146 5 C -0.151 4.151 6 C -0.143 4.143 7 C -0.163 4.163 8 C 0.104 3.896 9 C 0.015 3.985 10 N -0.368 5.368 11 C -0.371 4.371 12 H 0.077 0.923 13 C -0.259 4.259 14 N -0.613 5.613 15 Si 0.794 3.206 16 H -0.200 1.200 17 H -0.220 1.220 18 H -0.217 1.217 19 N -0.354 5.354 20 C 0.302 3.698 21 O -0.454 6.454 22 C -0.164 4.164 23 C -0.062 4.062 24 C -0.189 4.189 25 C -0.241 4.241 26 C -0.107 4.107 27 O -0.087 6.087 28 C -0.121 4.121 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.036 0.964 41 H 0.031 0.969 42 H 0.210 0.790 43 H 0.059 0.941 44 H 0.240 0.760 45 H 0.134 0.866 46 H 0.109 0.891 47 H 0.073 0.927 48 H 0.092 0.908 49 H 0.180 0.820 50 H 0.254 0.746 51 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 6.891 -16.956 -9.489 20.616 hybrid contribution -0.049 1.433 0.762 1.623 sum 6.842 -15.523 -8.727 19.077 Atomic orbital electron populations 1.21892 0.94012 1.02502 1.01578 1.21181 0.97123 0.98438 0.93685 0.92808 1.21561 1.00722 0.96058 0.96223 1.21549 1.01264 0.94727 0.97510 1.21400 1.00525 0.98739 0.93615 1.21847 1.00884 0.93965 0.99630 1.20356 0.79649 0.95373 0.94239 1.21201 0.95148 0.85598 0.96601 1.42240 1.60533 1.12492 1.21539 1.19540 1.24283 0.95632 0.97678 0.92250 1.25337 1.01031 0.98845 1.00705 1.69772 1.39419 1.18706 1.33421 0.85214 0.77009 0.78874 0.79543 1.20015 1.21999 1.21677 1.45888 1.06582 1.53194 1.29780 1.20976 0.90743 0.77193 0.80907 1.90612 1.71110 1.49380 1.34296 1.21596 0.90220 1.03009 1.01526 1.19502 0.88851 1.00697 0.97180 1.20549 0.96221 0.97719 1.04411 1.22014 0.93372 1.02217 1.06539 1.24758 0.99937 0.87619 0.98366 1.84075 1.31030 1.35796 1.57768 1.24224 0.80772 1.01961 1.05156 0.94418 0.91434 0.90686 0.90653 0.91633 0.90420 0.91214 0.92537 0.91272 0.92266 0.90846 0.96352 0.96930 0.79028 0.94066 0.76049 0.86612 0.89126 0.92654 0.90792 0.81953 0.74579 0.77379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 8.15 71.98 0.59 -3.27 16 2 C -0.09 -2.43 2.15 -10.80 -0.02 -2.45 16 3 H 0.05 1.87 7.08 -2.39 -0.02 1.86 16 4 C -0.11 -2.24 5.28 30.60 0.16 -2.07 16 5 C -0.11 -2.03 5.65 30.60 0.17 -1.86 16 6 C -0.11 -2.26 5.77 30.59 0.18 -2.08 16 7 C -0.12 -3.57 4.18 30.59 0.13 -3.44 16 8 C 0.19 6.18 0.09 3.60 0.00 6.18 16 9 C 0.14 6.25 4.72 86.38 0.41 6.65 16 10 N -0.73 -37.58 5.19 -343.45 -1.78 -39.36 16 11 C -0.24 -13.97 9.99 84.03 0.84 -13.13 16 12 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 13 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 14 N -0.96 -58.35 13.06 21.65 0.28 -58.07 16 15 Si 0.96 47.62 29.55 68.60 2.03 49.65 16 16 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 17 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 18 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 19 N -0.70 -21.75 3.49 -422.92 -1.48 -23.23 16 20 C 0.51 17.12 7.16 87.66 0.63 17.75 16 21 O -0.57 -23.48 12.28 -3.05 -0.04 -23.52 16 22 C -0.12 -3.21 5.68 29.85 0.17 -3.04 16 23 C -0.02 -0.65 5.02 29.85 0.15 -0.50 16 24 C -0.19 -4.45 5.42 -19.94 -0.11 -4.56 16 25 C -0.22 -4.29 10.87 22.19 0.24 -4.05 16 26 C -0.04 -0.67 12.09 66.97 0.81 0.14 16 27 O -0.19 -4.21 10.65 -2.48 -0.03 -4.24 16 28 C -0.05 -1.25 12.01 66.97 0.80 -0.45 16 29 H 0.04 1.24 6.32 -2.39 -0.02 1.22 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.73 4.81 -2.39 -0.01 1.72 16 32 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.06 1.28 6.95 -2.39 -0.02 1.27 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.20 6.43 -2.39 -0.02 1.19 16 36 H 0.06 1.25 7.54 -2.39 -0.02 1.23 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 2.03 6.05 -2.39 -0.01 2.02 16 39 H 0.07 1.99 6.43 -2.38 -0.02 1.98 16 40 H 0.02 0.83 6.18 -2.38 -0.01 0.82 16 41 H 0.01 0.64 6.45 -2.39 -0.02 0.62 16 42 H 0.38 19.95 6.45 -92.72 -0.60 19.35 16 43 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.40 10.94 7.48 -92.71 -0.69 10.25 16 45 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 48 H 0.07 2.00 8.10 -2.39 -0.02 1.98 16 49 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 50 H 0.24 1.80 8.06 -2.91 -0.02 1.77 16 51 H 0.21 4.27 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -73.06 388.80 4.26 -68.80 By element: Atomic # 1 Polarization: 43.93 SS G_CDS: -0.34 Total: 43.59 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 5.61 Total: -13.62 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -2.98 Total: -120.65 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.06 Total: -27.76 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -73.06 4.26 -68.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568035459.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.640 kcal (2) G-P(sol) polarization free energy of solvation -73.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds