Wall clock time and date at job start Tue Mar 31 2020 17:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47176 * 2 1 4 4 C 1.52993 * 109.46792 * 120.00207 * 2 1 3 5 5 C 1.53001 * 109.47046 * 180.02562 * 4 2 1 6 6 C 1.53007 * 109.46956 * 299.99615 * 5 4 2 7 7 C 1.52998 * 109.46995 * 59.99791 * 6 5 4 8 8 C 1.52997 * 109.46883 * 239.99936 * 2 1 3 9 9 C 1.53003 * 109.47560 * 60.00105 * 8 2 1 10 10 N 1.46503 * 109.46846 * 54.96970 * 9 8 2 11 11 C 1.36936 * 120.00043 * 185.06544 * 10 9 8 12 12 H 1.08000 * 119.99590 * 359.97438 * 11 10 9 13 13 C 1.38810 * 120.00049 * 179.97438 * 11 10 9 14 14 N 1.31620 * 120.00193 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99953 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47281 * 59.99526 * 15 13 11 17 17 H 1.48492 * 109.47243 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46848 * 299.99971 * 15 13 11 19 19 N 1.46501 * 109.47099 * 299.99899 * 8 2 1 20 20 C 1.34775 * 119.99993 * 184.19208 * 19 8 2 21 21 O 1.21288 * 120.00074 * 354.57203 * 20 19 8 22 22 C 1.50706 * 120.00138 * 174.56311 * 20 19 8 23 23 C 1.53003 * 109.46974 * 180.02562 * 22 20 19 24 24 C 1.50706 * 109.46580 * 180.02562 * 23 22 20 25 25 C 1.41382 * 126.57328 * 269.71007 * 24 23 22 26 26 C 1.34519 * 106.83733 * 179.83774 * 25 24 23 27 27 O 1.34304 * 108.41927 * 0.43090 * 26 25 24 28 28 C 1.34306 * 109.47534 * 359.72070 * 27 26 25 29 29 H 1.09001 * 109.47248 * 300.00286 * 1 2 3 30 30 H 1.09004 * 109.47035 * 59.99962 * 1 2 3 31 31 H 1.08998 * 109.47176 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47697 * 59.99468 * 4 2 1 33 33 H 1.09001 * 109.47277 * 299.99490 * 4 2 1 34 34 H 1.08998 * 109.47491 * 59.99116 * 5 4 2 35 35 H 1.09004 * 109.47289 * 179.97438 * 5 4 2 36 36 H 1.08994 * 109.47395 * 180.02562 * 6 5 4 37 37 H 1.08998 * 109.46614 * 300.00039 * 6 5 4 38 38 H 1.08998 * 109.46969 * 60.00150 * 7 6 5 39 39 H 1.09001 * 109.46888 * 180.02562 * 7 6 5 40 40 H 1.09001 * 109.47230 * 174.96629 * 9 8 2 41 41 H 1.08997 * 109.46749 * 294.97149 * 9 8 2 42 42 H 0.97001 * 119.99808 * 5.06049 * 10 9 8 43 43 H 0.96993 * 120.00117 * 179.97438 * 14 13 11 44 44 H 0.97002 * 120.00220 * 4.19779 * 19 8 2 45 45 H 1.08997 * 109.47281 * 300.00672 * 22 20 19 46 46 H 1.08998 * 109.46732 * 60.00198 * 22 20 19 47 47 H 1.08992 * 109.47073 * 300.00178 * 23 22 20 48 48 H 1.08994 * 109.46954 * 60.00580 * 23 22 20 49 49 H 1.07997 * 126.58854 * 0.02562 * 25 24 23 50 50 H 1.07996 * 125.79045 * 180.11989 * 26 25 24 51 51 H 1.08002 * 125.79051 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7208 1.2496 6 6 4.0805 -1.4417 0.0003 7 6 3.5705 -0.7205 -1.2489 8 6 2.0400 -0.7213 -1.2492 9 6 1.5300 -0.0001 -2.4986 10 7 1.9171 1.4117 -2.4396 11 6 1.4805 2.2821 -3.4023 12 1 0.8513 1.9277 -4.2054 13 6 1.8468 3.6198 -3.3461 14 7 2.6133 4.0518 -2.3672 15 14 1.2507 4.8074 -4.6591 16 1 -0.2339 4.8415 -4.6586 17 1 1.7767 6.1662 -4.3732 18 1 1.7349 4.3584 -5.9892 19 7 1.5516 -2.1025 -1.2492 20 6 1.9454 -2.9565 -2.2146 21 8 2.6239 -2.5575 -3.1374 22 6 1.5427 -4.4072 -2.1475 23 6 2.1162 -5.1520 -3.3548 24 6 1.7129 -6.6025 -3.2880 25 6 2.4309 -7.6486 -2.6642 26 6 1.7130 -8.7726 -2.8396 27 8 0.6092 -8.4660 -3.5406 28 6 0.6039 -7.1514 -3.8153 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6766 -1.7489 1.2493 33 1 1.6767 -0.2074 2.1392 34 1 3.9330 0.3070 1.2497 35 1 3.9333 -1.2342 2.1398 36 1 5.1704 -1.4418 0.0007 37 1 3.7175 -2.4695 0.0002 38 1 3.9335 0.3073 -1.2487 39 1 3.9338 -1.2344 -2.1389 40 1 1.9651 -0.4593 -3.3862 41 1 0.4438 -0.0774 -2.5447 42 1 2.4825 1.7298 -1.7184 43 1 2.8695 4.9865 -2.3282 44 1 0.9448 -2.4024 -0.5543 45 1 1.9305 -4.8499 -1.2301 46 1 0.4554 -4.4832 -2.1562 47 1 1.7286 -4.7094 -4.2723 48 1 3.2034 -5.0760 -3.3457 49 1 3.3733 -7.5616 -2.1440 50 1 1.9813 -9.7557 -2.4820 51 1 -0.1612 -6.6242 -4.3658 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568035462.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:54 Heat of formation + Delta-G solvation = -29.365976 kcal Electronic energy + Delta-G solvation = -30072.906897 eV Core-core repulsion = 26166.438764 eV Total energy + Delta-G solvation = -3906.468133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.75996 -40.56346 -38.13287 -34.96668 -34.47925 -33.47621 -32.21749 -31.79940 -31.09584 -29.53025 -28.80118 -26.43169 -24.97025 -24.72870 -22.74423 -21.81916 -21.69379 -20.63973 -20.50957 -20.06655 -18.48049 -17.72822 -17.12447 -16.94377 -16.12124 -15.64515 -15.18381 -14.93711 -14.76834 -14.38206 -14.14877 -13.95426 -13.85320 -13.63569 -13.38127 -13.03136 -12.92721 -12.72746 -12.60739 -12.42263 -12.30829 -12.05922 -11.67855 -11.62330 -11.42483 -11.31354 -11.09845 -10.99949 -10.84538 -10.73740 -10.52980 -10.34435 -10.07102 -9.98959 -9.87235 -9.77424 -9.60923 -9.14498 -8.76776 -8.71005 -8.55058 -6.80059 -5.69219 -2.95817 1.53930 2.35588 2.90966 2.92717 3.44832 3.49064 3.53301 3.54993 4.55559 4.61484 4.68708 4.79085 4.91955 4.98328 4.98912 5.02906 5.09517 5.17125 5.37082 5.45628 5.49005 5.51304 5.56801 5.64970 5.69127 5.73287 5.81616 5.83977 5.85865 5.87917 6.02131 6.05240 6.07468 6.12039 6.16856 6.23737 6.31469 6.37420 6.39993 6.50928 6.53776 6.62088 6.65955 6.83126 6.89215 6.91737 7.00807 7.18940 7.77831 7.84730 8.49518 8.55569 9.61351 10.19752 10.54822 11.53932 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013285 B = 0.002909 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.073269 B = 9623.682410 C =10864.731220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.097 0.903 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.113 4.113 7 C -0.128 4.128 8 C 0.182 3.818 9 C 0.146 3.854 10 N -0.726 5.726 11 C -0.231 4.231 12 H 0.067 0.933 13 C -0.015 4.015 14 N -0.936 5.936 15 Si 0.905 3.095 16 H -0.288 1.288 17 H -0.292 1.292 18 H -0.287 1.287 19 N -0.717 5.717 20 C 0.508 3.492 21 O -0.527 6.527 22 C -0.134 4.134 23 C -0.035 4.035 24 C -0.175 4.175 25 C -0.208 4.208 26 C -0.046 4.046 27 O -0.180 6.180 28 C -0.042 4.042 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.020 0.980 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.394 0.606 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.147 0.853 50 H 0.200 0.800 51 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.427 -23.442 7.220 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.115 0.885 4 C -0.149 4.149 5 C -0.158 4.158 6 C -0.150 4.150 7 C -0.166 4.166 8 C 0.097 3.903 9 C 0.018 3.982 10 N -0.372 5.372 11 C -0.362 4.362 12 H 0.085 0.915 13 C -0.210 4.210 14 N -0.585 5.585 15 Si 0.737 3.263 16 H -0.214 1.214 17 H -0.218 1.218 18 H -0.214 1.214 19 N -0.369 5.369 20 C 0.294 3.706 21 O -0.404 6.404 22 C -0.174 4.174 23 C -0.073 4.073 24 C -0.177 4.177 25 C -0.227 4.227 26 C -0.114 4.114 27 O -0.075 6.075 28 C -0.109 4.109 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.056 0.944 41 H 0.038 0.962 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.229 0.771 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.098 0.902 48 H 0.099 0.901 49 H 0.165 0.835 50 H 0.217 0.783 51 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.219 -23.277 6.335 24.225 hybrid contribution -0.280 0.787 0.017 0.835 sum -2.500 -22.490 6.352 23.503 Atomic orbital electron populations 1.21824 0.95146 1.00458 1.02736 1.21348 0.95898 1.01017 0.92636 0.88482 1.21599 0.95671 0.99865 0.97813 1.21550 0.95661 1.01131 0.97408 1.21471 0.99618 0.98970 0.94955 1.21916 0.94234 1.02151 0.98279 1.20498 0.93794 0.79894 0.96146 1.21040 0.96489 0.86062 0.94596 1.42308 1.61039 1.02426 1.31378 1.19163 1.24468 0.89285 1.03311 0.91467 1.24675 1.00739 0.97037 0.98595 1.69634 1.40770 1.15090 1.33007 0.86290 0.78111 0.80500 0.81447 1.21443 1.21793 1.21375 1.46161 1.49606 1.11778 1.29386 1.20554 0.80232 0.87722 0.82061 1.90712 1.38230 1.78438 1.32971 1.21653 1.02615 0.92518 1.00650 1.19693 1.01894 0.87715 0.97972 1.20555 0.96442 0.97170 1.03496 1.21801 1.02555 0.92432 1.05957 1.24007 0.86945 1.00494 0.99940 1.84066 1.39966 1.26027 1.57491 1.23938 1.01177 0.80925 1.04884 0.93051 0.90989 0.93937 0.92740 0.92154 0.91638 0.92765 0.92658 0.92841 0.90367 0.89904 0.94366 0.96213 0.78232 0.93610 0.77140 0.89247 0.89314 0.90160 0.90119 0.83520 0.78325 0.78170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.67 37.16 0.32 -1.73 16 2 C -0.09 -1.37 1.78 -90.62 -0.16 -1.53 16 3 H 0.10 1.81 6.67 -51.93 -0.35 1.46 16 4 C -0.11 -1.36 5.03 -26.73 -0.13 -1.49 16 5 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 6 C -0.11 -1.54 5.77 -26.73 -0.15 -1.69 16 7 C -0.13 -2.19 4.33 -26.71 -0.12 -2.30 16 8 C 0.18 2.97 0.11 -131.79 -0.01 2.96 16 9 C 0.15 3.10 4.56 -4.04 -0.02 3.09 16 10 N -0.73 -18.40 5.00 -59.91 -0.30 -18.70 16 11 C -0.23 -6.57 9.99 -15.06 -0.15 -6.72 16 12 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 13 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 14 N -0.94 -28.32 13.06 55.49 0.72 -27.60 16 15 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 N -0.72 -9.33 3.74 -47.58 -0.18 -9.50 16 20 C 0.51 6.96 7.17 -10.98 -0.08 6.88 16 21 O -0.53 -9.48 12.28 5.55 0.07 -9.41 16 22 C -0.13 -1.30 5.68 -27.88 -0.16 -1.46 16 23 C -0.03 -0.36 5.02 -27.88 -0.14 -0.50 16 24 C -0.18 -1.68 5.42 -104.74 -0.57 -2.25 16 25 C -0.21 -1.82 10.87 -39.70 -0.43 -2.25 16 26 C -0.05 -0.36 12.09 29.42 0.36 0.00 16 27 O -0.18 -1.67 10.65 5.70 0.06 -1.61 16 28 C -0.04 -0.37 12.01 29.41 0.35 -0.01 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.24 6.55 -51.93 -0.34 0.90 16 31 H 0.04 0.49 6.78 -51.93 -0.35 0.14 16 32 H 0.05 0.57 6.95 -51.93 -0.36 0.21 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.69 7.54 -51.93 -0.39 0.29 16 38 H 0.08 1.54 7.08 -51.93 -0.37 1.17 16 39 H 0.08 1.60 6.06 -51.93 -0.31 1.28 16 40 H 0.04 0.92 6.44 -51.93 -0.33 0.58 16 41 H 0.02 0.43 6.71 -51.93 -0.35 0.08 16 42 H 0.38 10.03 5.38 -40.82 -0.22 9.81 16 43 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.39 4.08 6.18 -40.82 -0.25 3.83 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 48 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 49 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 50 H 0.20 0.80 8.06 -52.49 -0.42 0.38 16 51 H 0.20 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 391.37 15.07 5.90 5.90 Total: -1.00 -33.16 391.37 -8.34 -41.50 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -8.24 Total: 12.79 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -1.35 Total: -11.22 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.25 Total: -55.80 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.13 Total: -11.03 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.16 -8.34 -41.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568035462.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.136 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds