Wall clock time and date at job start Tue Mar 31 2020 17:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47176 * 2 1 4 4 C 1.52993 * 109.46792 * 120.00207 * 2 1 3 5 5 C 1.53001 * 109.47046 * 180.02562 * 4 2 1 6 6 C 1.53007 * 109.46956 * 299.99615 * 5 4 2 7 7 C 1.52998 * 109.46995 * 59.99791 * 6 5 4 8 8 C 1.52997 * 109.46883 * 239.99936 * 2 1 3 9 9 C 1.53003 * 109.47560 * 60.00105 * 8 2 1 10 10 N 1.46503 * 109.46846 * 54.96970 * 9 8 2 11 11 C 1.36936 * 120.00043 * 185.06544 * 10 9 8 12 12 H 1.08000 * 119.99590 * 359.97438 * 11 10 9 13 13 C 1.38810 * 120.00049 * 179.97438 * 11 10 9 14 14 N 1.31620 * 120.00193 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99953 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47281 * 59.99526 * 15 13 11 17 17 H 1.48492 * 109.47243 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46848 * 299.99971 * 15 13 11 19 19 N 1.46501 * 109.47099 * 299.99899 * 8 2 1 20 20 C 1.34775 * 119.99993 * 184.19208 * 19 8 2 21 21 O 1.21288 * 120.00074 * 354.57203 * 20 19 8 22 22 C 1.50706 * 120.00138 * 174.56311 * 20 19 8 23 23 C 1.53003 * 109.46974 * 180.02562 * 22 20 19 24 24 C 1.50706 * 109.46580 * 180.02562 * 23 22 20 25 25 C 1.41382 * 126.57328 * 269.71007 * 24 23 22 26 26 C 1.34519 * 106.83733 * 179.83774 * 25 24 23 27 27 O 1.34304 * 108.41927 * 0.43090 * 26 25 24 28 28 C 1.34306 * 109.47534 * 359.72070 * 27 26 25 29 29 H 1.09001 * 109.47248 * 300.00286 * 1 2 3 30 30 H 1.09004 * 109.47035 * 59.99962 * 1 2 3 31 31 H 1.08998 * 109.47176 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47697 * 59.99468 * 4 2 1 33 33 H 1.09001 * 109.47277 * 299.99490 * 4 2 1 34 34 H 1.08998 * 109.47491 * 59.99116 * 5 4 2 35 35 H 1.09004 * 109.47289 * 179.97438 * 5 4 2 36 36 H 1.08994 * 109.47395 * 180.02562 * 6 5 4 37 37 H 1.08998 * 109.46614 * 300.00039 * 6 5 4 38 38 H 1.08998 * 109.46969 * 60.00150 * 7 6 5 39 39 H 1.09001 * 109.46888 * 180.02562 * 7 6 5 40 40 H 1.09001 * 109.47230 * 174.96629 * 9 8 2 41 41 H 1.08997 * 109.46749 * 294.97149 * 9 8 2 42 42 H 0.97001 * 119.99808 * 5.06049 * 10 9 8 43 43 H 0.96993 * 120.00117 * 179.97438 * 14 13 11 44 44 H 0.97002 * 120.00220 * 4.19779 * 19 8 2 45 45 H 1.08997 * 109.47281 * 300.00672 * 22 20 19 46 46 H 1.08998 * 109.46732 * 60.00198 * 22 20 19 47 47 H 1.08992 * 109.47073 * 300.00178 * 23 22 20 48 48 H 1.08994 * 109.46954 * 60.00580 * 23 22 20 49 49 H 1.07997 * 126.58854 * 0.02562 * 25 24 23 50 50 H 1.07996 * 125.79045 * 180.11989 * 26 25 24 51 51 H 1.08002 * 125.79051 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7208 1.2496 6 6 4.0805 -1.4417 0.0003 7 6 3.5705 -0.7205 -1.2489 8 6 2.0400 -0.7213 -1.2492 9 6 1.5300 -0.0001 -2.4986 10 7 1.9171 1.4117 -2.4396 11 6 1.4805 2.2821 -3.4023 12 1 0.8513 1.9277 -4.2054 13 6 1.8468 3.6198 -3.3461 14 7 2.6133 4.0518 -2.3672 15 14 1.2507 4.8074 -4.6591 16 1 -0.2339 4.8415 -4.6586 17 1 1.7767 6.1662 -4.3732 18 1 1.7349 4.3584 -5.9892 19 7 1.5516 -2.1025 -1.2492 20 6 1.9454 -2.9565 -2.2146 21 8 2.6239 -2.5575 -3.1374 22 6 1.5427 -4.4072 -2.1475 23 6 2.1162 -5.1520 -3.3548 24 6 1.7129 -6.6025 -3.2880 25 6 2.4309 -7.6486 -2.6642 26 6 1.7130 -8.7726 -2.8396 27 8 0.6092 -8.4660 -3.5406 28 6 0.6039 -7.1514 -3.8153 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6766 -1.7489 1.2493 33 1 1.6767 -0.2074 2.1392 34 1 3.9330 0.3070 1.2497 35 1 3.9333 -1.2342 2.1398 36 1 5.1704 -1.4418 0.0007 37 1 3.7175 -2.4695 0.0002 38 1 3.9335 0.3073 -1.2487 39 1 3.9338 -1.2344 -2.1389 40 1 1.9651 -0.4593 -3.3862 41 1 0.4438 -0.0774 -2.5447 42 1 2.4825 1.7298 -1.7184 43 1 2.8695 4.9865 -2.3282 44 1 0.9448 -2.4024 -0.5543 45 1 1.9305 -4.8499 -1.2301 46 1 0.4554 -4.4832 -2.1562 47 1 1.7286 -4.7094 -4.2723 48 1 3.2034 -5.0760 -3.3457 49 1 3.3733 -7.5616 -2.1440 50 1 1.9813 -9.7557 -2.4820 51 1 -0.1612 -6.6242 -4.3658 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568035462.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:53 Heat of formation + Delta-G solvation = -49.788451 kcal Electronic energy + Delta-G solvation = -30073.792482 eV Core-core repulsion = 26166.438764 eV Total energy + Delta-G solvation = -3907.353718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.39248 -41.82557 -39.33453 -36.34368 -35.73754 -34.80140 -33.52099 -33.21124 -32.28742 -30.73769 -29.79407 -27.81898 -26.55659 -25.70748 -24.60518 -22.98211 -22.41569 -21.76681 -21.58548 -20.89315 -19.79578 -19.21796 -18.51936 -17.89330 -16.88368 -16.79743 -16.39633 -16.35060 -16.04423 -15.64034 -15.30651 -15.19146 -15.13735 -15.10378 -14.75781 -14.41160 -14.17799 -13.78177 -13.61653 -13.32273 -13.24277 -13.10173 -13.00742 -12.96168 -12.85814 -12.73699 -12.69743 -12.50344 -12.28473 -12.18310 -11.87567 -11.83734 -11.74570 -11.38668 -11.14019 -11.06049 -10.86693 -10.59507 -10.30765 -9.85843 -9.38334 -8.95481 -7.94943 -5.22229 0.92607 1.43710 1.47272 1.53280 1.69607 1.80557 2.29043 2.39606 2.57226 3.37370 3.62984 3.81559 3.82303 3.84610 3.96507 4.06067 4.12862 4.19836 4.24099 4.27865 4.37655 4.44382 4.49417 4.53727 4.58608 4.65473 4.72805 4.76642 4.86205 4.89980 4.91517 4.97264 5.00769 5.10498 5.16233 5.18924 5.21905 5.26919 5.28400 5.33022 5.38547 5.39517 5.44773 5.45737 5.54614 5.57882 5.65041 5.79024 6.26895 6.27291 6.76287 7.33694 7.46875 8.09228 8.35363 9.28210 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013285 B = 0.002909 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.073269 B = 9623.682410 C =10864.731220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 H 0.054 0.946 4 C -0.104 4.104 5 C -0.118 4.118 6 C -0.104 4.104 7 C -0.123 4.123 8 C 0.196 3.804 9 C 0.151 3.849 10 N -0.731 5.731 11 C -0.244 4.244 12 H 0.065 0.935 13 C -0.071 4.071 14 N -0.966 5.966 15 Si 0.971 3.029 16 H -0.277 1.277 17 H -0.291 1.291 18 H -0.283 1.283 19 N -0.703 5.703 20 C 0.505 3.495 21 O -0.575 6.575 22 C -0.119 4.119 23 C -0.029 4.029 24 C -0.190 4.190 25 C -0.227 4.227 26 C -0.041 4.041 27 O -0.191 6.191 28 C -0.047 4.047 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.055 0.945 40 H 0.008 0.992 41 H 0.018 0.982 42 H 0.376 0.624 43 H 0.252 0.748 44 H 0.413 0.587 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.064 0.936 48 H 0.063 0.937 49 H 0.157 0.843 50 H 0.233 0.767 51 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.808 -26.088 9.088 27.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 H 0.073 0.927 4 C -0.141 4.141 5 C -0.156 4.156 6 C -0.141 4.141 7 C -0.161 4.161 8 C 0.109 3.891 9 C 0.024 3.976 10 N -0.375 5.375 11 C -0.376 4.376 12 H 0.083 0.917 13 C -0.263 4.263 14 N -0.617 5.617 15 Si 0.800 3.200 16 H -0.203 1.203 17 H -0.217 1.217 18 H -0.210 1.210 19 N -0.357 5.357 20 C 0.293 3.707 21 O -0.454 6.454 22 C -0.159 4.159 23 C -0.067 4.067 24 C -0.192 4.192 25 C -0.246 4.246 26 C -0.108 4.108 27 O -0.087 6.087 28 C -0.114 4.114 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.025 0.975 41 H 0.036 0.964 42 H 0.210 0.790 43 H 0.060 0.940 44 H 0.251 0.749 45 H 0.133 0.867 46 H 0.131 0.869 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.174 0.826 50 H 0.250 0.750 51 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -3.636 -25.971 8.224 27.483 hybrid contribution 0.177 1.561 -0.642 1.697 sum -3.460 -24.410 7.582 25.793 Atomic orbital electron populations 1.21777 0.94131 1.02265 1.01525 1.21241 0.96671 0.98971 0.93621 0.92733 1.21577 0.95161 1.01182 0.96204 1.21552 0.96096 1.00159 0.97771 1.21417 0.99824 0.99412 0.93486 1.21784 0.94952 1.00021 0.99371 1.20070 0.93148 0.81439 0.94405 1.21047 0.96015 0.84324 0.96252 1.42407 1.60729 1.03861 1.30531 1.19502 1.24164 0.90186 1.03733 0.91712 1.25477 1.01333 0.98640 1.00891 1.69793 1.42028 1.15145 1.34704 0.85254 0.78012 0.78003 0.78753 1.20271 1.21725 1.20989 1.45942 1.49716 1.10020 1.29984 1.21348 0.79044 0.89282 0.80999 1.90714 1.40338 1.79501 1.34880 1.21623 1.04046 0.88877 1.01357 1.19543 1.00777 0.88668 0.97735 1.20532 0.97262 0.96687 1.04680 1.22026 1.03268 0.92609 1.06677 1.24674 0.85908 1.01633 0.98588 1.84082 1.40678 1.26148 1.57785 1.24322 1.01474 0.80925 1.04650 0.91699 0.94769 0.90550 0.89697 0.90590 0.93702 0.89671 0.92424 0.90959 0.94110 0.92608 0.97452 0.96404 0.79007 0.93955 0.74870 0.86668 0.86872 0.91766 0.91821 0.82579 0.75030 0.76347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 8.67 71.98 0.62 -3.17 16 2 C -0.09 -2.57 1.78 -10.79 -0.02 -2.59 16 3 H 0.05 2.13 6.67 -2.39 -0.02 2.11 16 4 C -0.10 -2.21 5.03 30.59 0.15 -2.06 16 5 C -0.12 -2.72 5.92 30.60 0.18 -2.54 16 6 C -0.10 -2.73 5.77 30.60 0.18 -2.55 16 7 C -0.12 -4.41 4.33 30.61 0.13 -4.28 16 8 C 0.20 6.52 0.11 3.62 0.00 6.52 16 9 C 0.15 6.77 4.56 86.38 0.39 7.16 16 10 N -0.73 -39.28 5.00 -343.44 -1.72 -40.99 16 11 C -0.24 -14.45 9.99 84.03 0.84 -13.61 16 12 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 13 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 14 N -0.97 -60.50 13.06 21.65 0.28 -60.22 16 15 Si 0.97 48.06 29.55 68.60 2.03 50.08 16 16 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 17 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 18 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 19 N -0.70 -17.19 3.74 -422.83 -1.58 -18.78 16 20 C 0.51 13.42 7.17 87.66 0.63 14.05 16 21 O -0.58 -21.49 12.28 -3.05 -0.04 -21.53 16 22 C -0.12 -2.04 5.68 29.85 0.17 -1.87 16 23 C -0.03 -0.59 5.02 29.85 0.15 -0.44 16 24 C -0.19 -3.35 5.42 -19.94 -0.11 -3.46 16 25 C -0.23 -3.49 10.87 22.19 0.24 -3.25 16 26 C -0.04 -0.53 12.09 66.97 0.81 0.28 16 27 O -0.19 -3.15 10.65 -2.52 -0.03 -3.17 16 28 C -0.05 -0.74 12.01 66.96 0.80 0.07 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.03 1.18 6.55 -2.39 -0.02 1.16 16 31 H 0.08 1.52 6.78 -2.39 -0.02 1.50 16 32 H 0.08 1.34 6.95 -2.39 -0.02 1.32 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.65 7.54 -2.39 -0.02 1.63 16 38 H 0.04 1.74 7.08 -2.39 -0.02 1.72 16 39 H 0.06 2.29 6.06 -2.39 -0.01 2.28 16 40 H 0.01 0.39 6.44 -2.39 -0.02 0.37 16 41 H 0.02 0.81 6.71 -2.39 -0.02 0.79 16 42 H 0.38 21.10 5.38 -92.71 -0.50 20.60 16 43 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.41 6.99 6.18 -92.71 -0.57 6.41 16 45 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 48 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 49 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 50 H 0.23 1.07 8.06 -2.91 -0.02 1.05 16 51 H 0.22 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -77.23 391.37 4.46 -72.77 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: -0.14 Total: 37.34 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 5.65 Total: -15.51 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -3.01 Total: -119.98 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.06 Total: -24.70 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.08 kcal Total: -77.23 4.46 -72.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568035462.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.979 kcal (2) G-P(sol) polarization free energy of solvation -77.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds