Wall clock time and date at job start Tue Mar 31 2020 17:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49816 * 2 1 4 4 C 1.53041 * 109.49766 * 239.89797 * 2 1 3 5 5 C 1.53034 * 109.53957 * 301.41538 * 4 2 1 6 6 C 1.53190 * 109.31374 * 298.63311 * 5 4 2 7 7 N 1.46931 * 108.77474 * 54.63256 * 6 5 4 8 8 C 1.34782 * 120.62691 * 126.39087 * 7 6 5 9 9 O 1.21280 * 119.99731 * 185.40792 * 8 7 6 10 10 C 1.50701 * 120.00296 * 5.41633 * 8 7 6 11 11 C 1.52999 * 109.47200 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.46848 * 179.97438 * 11 10 8 13 13 C 1.34512 * 125.78932 * 89.71332 * 12 11 10 14 14 C 1.41380 * 106.83893 * 179.88318 * 13 12 11 15 15 C 1.34516 * 106.84050 * 0.37605 * 14 13 12 16 16 O 1.34298 * 125.78468 * 270.01717 * 12 11 10 17 17 C 1.46919 * 118.74212 * 306.39373 * 7 6 5 18 18 H 1.08996 * 109.70724 * 293.75218 * 17 7 6 19 19 C 1.52994 * 109.58975 * 173.39124 * 17 7 6 20 20 C 1.53005 * 109.47352 * 180.62053 * 19 17 7 21 21 N 1.46497 * 109.47173 * 175.08653 * 20 19 17 22 22 C 1.36929 * 120.00244 * 180.02562 * 21 20 19 23 23 H 1.08001 * 119.99765 * 359.97438 * 22 21 20 24 24 C 1.38810 * 120.00492 * 179.97438 * 22 21 20 25 25 N 1.31624 * 119.99779 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00241 * 180.27408 * 24 22 21 27 27 H 1.48501 * 109.47107 * 269.72468 * 26 24 22 28 28 H 1.48499 * 109.47063 * 29.72488 * 26 24 22 29 29 H 1.48500 * 109.46987 * 149.72449 * 26 24 22 30 30 H 1.09000 * 109.47185 * 299.93723 * 1 2 3 31 31 H 1.09002 * 109.47370 * 59.93904 * 1 2 3 32 32 H 1.09002 * 109.47154 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46028 * 61.43290 * 4 2 1 34 34 H 1.08998 * 109.45739 * 181.38971 * 4 2 1 35 35 H 1.09003 * 109.50271 * 58.58246 * 5 4 2 36 36 H 1.09003 * 109.50130 * 178.68338 * 5 4 2 37 37 H 1.09002 * 109.59250 * 174.42253 * 6 5 4 38 38 H 1.08999 * 109.58798 * 294.71174 * 6 5 4 39 39 H 1.09000 * 109.46354 * 299.99664 * 10 8 7 40 40 H 1.09001 * 109.46936 * 59.99343 * 10 8 7 41 41 H 1.09005 * 109.46854 * 299.99412 * 11 10 8 42 42 H 1.08997 * 109.46953 * 59.99693 * 11 10 8 43 43 H 1.08001 * 126.58052 * 0.02600 * 13 12 11 44 44 H 1.07997 * 126.58220 * 180.12189 * 14 13 12 45 45 H 1.07999 * 125.78743 * 179.78448 * 15 14 13 46 46 H 1.09003 * 109.46660 * 60.62422 * 19 17 7 47 47 H 1.09000 * 109.47351 * 300.62473 * 19 17 7 48 48 H 1.08998 * 109.46726 * 55.08669 * 20 19 17 49 49 H 1.09001 * 109.46865 * 295.08291 * 20 19 17 50 50 H 0.97001 * 120.00073 * 359.97438 * 21 20 19 51 51 H 0.96999 * 119.99823 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7235 -1.2481 5 6 1.5030 -2.1562 -1.2653 6 6 2.0140 -2.9040 -0.0298 7 7 1.6516 -2.1377 1.1703 8 6 0.9743 -2.7212 2.1790 9 8 0.5954 -2.0560 3.1196 10 6 0.6881 -4.2003 2.1382 11 6 -0.0869 -4.6046 3.3939 12 6 -0.3736 -6.0835 3.3527 13 6 0.4197 -7.0526 3.8435 14 6 -0.2328 -8.2817 3.5939 15 6 -1.3819 -7.9908 2.9579 16 8 -1.4619 -6.6578 2.8146 17 6 2.0413 -0.7234 1.2499 18 1 3.1272 -0.6436 1.2996 19 6 1.4229 -0.0903 2.4979 20 6 1.8177 1.3861 2.5699 21 7 1.1318 2.0206 3.6982 22 6 1.3317 3.3494 3.9615 23 1 1.9953 3.9296 3.3376 24 6 0.6814 3.9507 5.0303 25 7 -0.1278 3.2437 5.7904 26 14 0.9482 5.7653 5.3848 27 1 2.0910 5.9242 6.3198 28 1 1.2432 6.4792 4.1166 29 1 -0.2775 6.3348 6.0000 30 1 -0.3633 0.5129 0.8905 31 1 -0.3634 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6987 -0.1966 -2.1389 34 1 3.1305 -0.7448 -1.2350 35 1 0.4132 -2.1360 -1.2533 36 1 1.8480 -2.6636 -2.1662 37 1 1.5554 -3.8919 0.0151 38 1 3.0976 -3.0065 -0.0869 39 1 0.0940 -4.4310 1.2540 40 1 1.6278 -4.7512 2.0985 41 1 0.5077 -4.3739 4.2779 42 1 -1.0265 -4.0536 3.4340 43 1 1.3713 -6.9174 4.3361 44 1 0.1249 -9.2657 3.8588 45 1 -2.1157 -8.7075 2.6202 46 1 1.7867 -0.6074 3.3858 47 1 0.3372 -0.1741 2.4479 48 1 1.5311 1.8844 1.6437 49 1 2.8959 1.4676 2.7078 50 1 0.5354 1.4996 4.2584 51 1 -0.5825 3.6640 6.5371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656421854.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:57 Heat of formation + Delta-G solvation = -4.904038 kcal Electronic energy + Delta-G solvation = -29630.417983 eV Core-core repulsion = 25725.010600 eV Total energy + Delta-G solvation = -3905.407384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.76023 -40.78833 -37.92507 -35.34575 -34.23454 -33.54526 -32.98939 -32.66668 -30.76182 -29.30587 -28.16592 -26.69048 -25.51933 -24.06842 -23.75947 -22.19787 -21.95201 -20.76850 -20.61193 -19.82853 -18.39676 -17.64540 -17.04587 -16.51441 -16.27947 -15.95718 -15.67182 -15.23412 -14.94631 -14.54667 -14.25251 -14.23553 -13.75283 -13.59309 -13.27156 -13.06136 -13.02835 -12.91894 -12.81064 -12.76807 -12.48362 -12.31838 -12.24316 -11.76430 -11.53057 -11.31304 -11.19809 -11.04795 -10.99919 -10.77752 -10.75882 -10.50006 -10.33074 -10.13549 -10.09114 -9.91351 -9.56325 -8.82540 -8.73494 -8.60120 -8.41350 -6.75674 -5.62911 -2.90691 1.51061 2.39288 2.69914 2.74720 3.03247 3.50768 3.55016 3.57358 4.28310 4.54200 4.62438 4.70119 4.72526 4.76301 4.78255 4.83525 4.87034 4.95996 5.01733 5.15176 5.17671 5.33401 5.36697 5.49228 5.58141 5.60122 5.61711 5.68471 5.70528 5.75367 5.77272 5.79454 5.81633 5.88270 5.98090 6.07901 6.12043 6.17412 6.29726 6.30694 6.38205 6.47741 6.54798 6.65099 6.73558 6.94334 7.14088 7.26543 7.48415 7.80598 8.30200 8.56261 9.66659 10.29248 10.64023 11.60046 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011288 B = 0.002817 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.841723 B = 9938.384208 C =11914.205681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 H 0.088 0.912 4 C -0.115 4.115 5 C -0.138 4.138 6 C 0.108 3.892 7 N -0.608 5.608 8 C 0.509 3.491 9 O -0.512 6.512 10 C -0.137 4.137 11 C -0.027 4.027 12 C -0.004 4.004 13 C -0.213 4.213 14 C -0.214 4.214 15 C -0.048 4.048 16 O -0.176 6.176 17 C 0.157 3.843 18 H 0.069 0.931 19 C -0.113 4.113 20 C 0.146 3.854 21 N -0.730 5.730 22 C -0.235 4.235 23 H 0.068 0.932 24 C -0.017 4.017 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.283 1.283 29 H -0.292 1.292 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.201 0.799 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.017 0.983 49 H 0.010 0.990 50 H 0.385 0.615 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.722 -24.253 -15.035 28.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 H 0.106 0.894 4 C -0.152 4.152 5 C -0.176 4.176 6 C -0.016 4.016 7 N -0.342 5.342 8 C 0.296 3.704 9 O -0.388 6.388 10 C -0.177 4.177 11 C -0.065 4.065 12 C -0.054 4.054 13 C -0.232 4.232 14 C -0.233 4.233 15 C -0.115 4.115 16 O -0.072 6.072 17 C 0.054 3.946 18 H 0.087 0.913 19 C -0.151 4.151 20 C 0.017 3.983 21 N -0.374 5.374 22 C -0.366 4.366 23 H 0.086 0.914 24 C -0.213 4.213 25 N -0.581 5.581 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.209 1.209 29 H -0.218 1.218 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.110 0.890 43 H 0.166 0.834 44 H 0.164 0.836 45 H 0.217 0.783 46 H 0.099 0.901 47 H 0.100 0.900 48 H 0.034 0.966 49 H 0.028 0.972 50 H 0.219 0.781 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.335 -23.561 -14.674 27.855 hybrid contribution 0.176 0.481 0.343 0.616 sum 2.511 -23.080 -14.332 27.284 Atomic orbital electron populations 1.21868 0.94705 1.01450 1.02244 1.21578 0.96992 1.00008 0.93850 0.89415 1.21561 1.00322 0.95198 0.98159 1.21962 1.01864 0.96538 0.97203 1.21711 1.00258 0.94942 0.84651 1.48107 1.56699 1.11497 1.17884 1.20491 0.78026 0.89426 0.82429 1.90897 1.49981 1.63669 1.34227 1.21733 1.02243 0.93951 0.99762 1.19896 1.02433 0.85337 0.98805 1.22535 0.86634 0.95958 1.00280 1.21636 1.02436 0.91841 1.07307 1.21838 0.96693 0.99519 1.05236 1.24016 1.00793 0.81955 1.04739 1.84039 1.40091 1.20211 1.62834 1.21320 0.98310 0.78710 0.96300 0.91332 1.22269 1.02263 0.94994 0.95586 1.20845 0.94830 0.91205 0.91387 1.42343 1.54132 1.08413 1.32520 1.19236 1.21618 0.86282 1.09498 0.91391 1.24743 1.00095 0.97941 0.98516 1.69685 1.33220 1.35068 1.20166 0.86211 0.76955 0.85360 0.77820 1.21845 1.20877 1.21844 0.91244 0.93295 0.93044 0.91777 0.91953 0.91025 0.91090 0.90013 0.91443 0.88929 0.88770 0.87747 0.88974 0.83448 0.83588 0.78270 0.90123 0.90026 0.96559 0.97231 0.78106 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.20 37.16 0.30 -1.65 16 2 C -0.11 -1.30 2.29 -90.50 -0.21 -1.51 16 3 H 0.09 1.18 6.65 -51.93 -0.35 0.84 16 4 C -0.11 -1.06 5.43 -26.69 -0.14 -1.20 16 5 C -0.14 -1.06 5.74 -26.62 -0.15 -1.21 16 6 C 0.11 0.85 6.33 -3.71 -0.02 0.82 16 7 N -0.61 -7.02 2.41 -165.22 -0.40 -7.42 16 8 C 0.51 6.57 7.61 -10.98 -0.08 6.49 16 9 O -0.51 -8.89 11.38 5.56 0.06 -8.82 16 10 C -0.14 -1.27 4.09 -27.88 -0.11 -1.38 16 11 C -0.03 -0.29 5.04 -27.88 -0.14 -0.43 16 12 C 0.00 -0.04 6.57 -35.62 -0.23 -0.27 16 13 C -0.21 -2.05 10.81 -39.70 -0.43 -2.48 16 14 C -0.21 -1.82 10.91 -39.70 -0.43 -2.25 16 15 C -0.05 -0.39 12.09 29.42 0.36 -0.04 16 16 O -0.18 -1.89 10.65 5.71 0.06 -1.83 16 17 C 0.16 2.16 2.72 -67.60 -0.18 1.97 16 18 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 19 C -0.11 -2.09 2.75 -26.73 -0.07 -2.17 16 20 C 0.15 3.15 6.05 -4.04 -0.02 3.13 16 21 N -0.73 -20.05 5.60 -59.91 -0.34 -20.38 16 22 C -0.23 -6.96 9.99 -15.06 -0.15 -7.11 16 23 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 24 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 25 N -0.93 -29.75 13.06 55.49 0.72 -29.03 16 26 Si 0.91 23.34 29.55 -169.99 -5.02 18.32 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 28 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 30 H 0.07 1.15 6.35 -51.93 -0.33 0.82 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.66 5.97 -51.93 -0.31 0.35 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.62 6.33 -51.93 -0.33 0.29 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.50 5.96 -51.93 -0.31 0.19 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.74 7.46 -51.93 -0.39 0.36 16 40 H 0.09 0.71 8.12 -51.93 -0.42 0.29 16 41 H 0.10 1.13 8.10 -51.93 -0.42 0.71 16 42 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 43 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.20 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.08 1.66 6.50 -51.93 -0.34 1.32 16 47 H 0.08 1.66 5.20 -51.93 -0.27 1.39 16 48 H 0.02 0.35 6.32 -51.93 -0.33 0.02 16 49 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 50 H 0.39 11.34 7.67 -40.82 -0.31 11.02 16 51 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 392.14 15.07 5.91 5.91 Total: -1.00 -35.15 392.14 -9.13 -44.28 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -8.30 Total: 8.88 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -1.83 Total: -9.90 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.01 Total: -56.83 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.12 Total: -10.65 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.15 -9.13 -44.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656421854.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.374 kcal (2) G-P(sol) polarization free energy of solvation -35.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds