Wall clock time and date at job start Tue Mar 31 2020 17:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49816 * 2 1 4 4 C 1.53041 * 109.49766 * 239.89797 * 2 1 3 5 5 C 1.53034 * 109.53957 * 301.41538 * 4 2 1 6 6 C 1.53190 * 109.31374 * 298.63311 * 5 4 2 7 7 N 1.46931 * 108.77474 * 54.63256 * 6 5 4 8 8 C 1.34782 * 120.62691 * 126.39087 * 7 6 5 9 9 O 1.21280 * 119.99731 * 185.40792 * 8 7 6 10 10 C 1.50701 * 120.00296 * 5.41633 * 8 7 6 11 11 C 1.52999 * 109.47200 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.46848 * 179.97438 * 11 10 8 13 13 C 1.34512 * 125.78932 * 89.71332 * 12 11 10 14 14 C 1.41380 * 106.83893 * 179.88318 * 13 12 11 15 15 C 1.34516 * 106.84050 * 0.37605 * 14 13 12 16 16 O 1.34298 * 125.78468 * 270.01717 * 12 11 10 17 17 C 1.46919 * 118.74212 * 306.39373 * 7 6 5 18 18 H 1.08996 * 109.70724 * 293.75218 * 17 7 6 19 19 C 1.52994 * 109.58975 * 173.39124 * 17 7 6 20 20 C 1.53005 * 109.47352 * 180.62053 * 19 17 7 21 21 N 1.46497 * 109.47173 * 175.08653 * 20 19 17 22 22 C 1.36929 * 120.00244 * 180.02562 * 21 20 19 23 23 H 1.08001 * 119.99765 * 359.97438 * 22 21 20 24 24 C 1.38810 * 120.00492 * 179.97438 * 22 21 20 25 25 N 1.31624 * 119.99779 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00241 * 180.27408 * 24 22 21 27 27 H 1.48501 * 109.47107 * 269.72468 * 26 24 22 28 28 H 1.48499 * 109.47063 * 29.72488 * 26 24 22 29 29 H 1.48500 * 109.46987 * 149.72449 * 26 24 22 30 30 H 1.09000 * 109.47185 * 299.93723 * 1 2 3 31 31 H 1.09002 * 109.47370 * 59.93904 * 1 2 3 32 32 H 1.09002 * 109.47154 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46028 * 61.43290 * 4 2 1 34 34 H 1.08998 * 109.45739 * 181.38971 * 4 2 1 35 35 H 1.09003 * 109.50271 * 58.58246 * 5 4 2 36 36 H 1.09003 * 109.50130 * 178.68338 * 5 4 2 37 37 H 1.09002 * 109.59250 * 174.42253 * 6 5 4 38 38 H 1.08999 * 109.58798 * 294.71174 * 6 5 4 39 39 H 1.09000 * 109.46354 * 299.99664 * 10 8 7 40 40 H 1.09001 * 109.46936 * 59.99343 * 10 8 7 41 41 H 1.09005 * 109.46854 * 299.99412 * 11 10 8 42 42 H 1.08997 * 109.46953 * 59.99693 * 11 10 8 43 43 H 1.08001 * 126.58052 * 0.02600 * 13 12 11 44 44 H 1.07997 * 126.58220 * 180.12189 * 14 13 12 45 45 H 1.07999 * 125.78743 * 179.78448 * 15 14 13 46 46 H 1.09003 * 109.46660 * 60.62422 * 19 17 7 47 47 H 1.09000 * 109.47351 * 300.62473 * 19 17 7 48 48 H 1.08998 * 109.46726 * 55.08669 * 20 19 17 49 49 H 1.09001 * 109.46865 * 295.08291 * 20 19 17 50 50 H 0.97001 * 120.00073 * 359.97438 * 21 20 19 51 51 H 0.96999 * 119.99823 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7235 -1.2481 5 6 1.5030 -2.1562 -1.2653 6 6 2.0140 -2.9040 -0.0298 7 7 1.6516 -2.1377 1.1703 8 6 0.9743 -2.7212 2.1790 9 8 0.5954 -2.0560 3.1196 10 6 0.6881 -4.2003 2.1382 11 6 -0.0869 -4.6046 3.3939 12 6 -0.3736 -6.0835 3.3527 13 6 0.4197 -7.0526 3.8435 14 6 -0.2328 -8.2817 3.5939 15 6 -1.3819 -7.9908 2.9579 16 8 -1.4619 -6.6578 2.8146 17 6 2.0413 -0.7234 1.2499 18 1 3.1272 -0.6436 1.2996 19 6 1.4229 -0.0903 2.4979 20 6 1.8177 1.3861 2.5699 21 7 1.1318 2.0206 3.6982 22 6 1.3317 3.3494 3.9615 23 1 1.9953 3.9296 3.3376 24 6 0.6814 3.9507 5.0303 25 7 -0.1278 3.2437 5.7904 26 14 0.9482 5.7653 5.3848 27 1 2.0910 5.9242 6.3198 28 1 1.2432 6.4792 4.1166 29 1 -0.2775 6.3348 6.0000 30 1 -0.3633 0.5129 0.8905 31 1 -0.3634 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6987 -0.1966 -2.1389 34 1 3.1305 -0.7448 -1.2350 35 1 0.4132 -2.1360 -1.2533 36 1 1.8480 -2.6636 -2.1662 37 1 1.5554 -3.8919 0.0151 38 1 3.0976 -3.0065 -0.0869 39 1 0.0940 -4.4310 1.2540 40 1 1.6278 -4.7512 2.0985 41 1 0.5077 -4.3739 4.2779 42 1 -1.0265 -4.0536 3.4340 43 1 1.3713 -6.9174 4.3361 44 1 0.1249 -9.2657 3.8588 45 1 -2.1157 -8.7075 2.6202 46 1 1.7867 -0.6074 3.3858 47 1 0.3372 -0.1741 2.4479 48 1 1.5311 1.8844 1.6437 49 1 2.8959 1.4676 2.7078 50 1 0.5354 1.4996 4.2584 51 1 -0.5825 3.6640 6.5371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656421854.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:56 Heat of formation + Delta-G solvation = -26.379785 kcal Electronic energy + Delta-G solvation = -29631.349241 eV Core-core repulsion = 25725.010600 eV Total energy + Delta-G solvation = -3906.338642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.46378 -41.81289 -38.95128 -37.00435 -35.39085 -34.58868 -34.10815 -33.64404 -32.51693 -30.23141 -29.50715 -27.78938 -26.62608 -25.52949 -24.81788 -23.72794 -22.63432 -22.08401 -21.36876 -20.80516 -19.38123 -19.17168 -18.29734 -17.50948 -17.24219 -16.87299 -16.82879 -16.40557 -16.29565 -15.75030 -15.41303 -15.30472 -15.01886 -14.88879 -14.58319 -14.52687 -14.13304 -13.85275 -13.70285 -13.54111 -13.49442 -13.25763 -13.17570 -12.99798 -12.89540 -12.80376 -12.51275 -12.35300 -12.32080 -12.11293 -12.04915 -11.86389 -11.73505 -11.67830 -11.31010 -11.19831 -10.89573 -10.82447 -9.99281 -9.44338 -9.34168 -9.00432 -7.94975 -5.25333 0.81043 1.43724 1.47705 1.56107 1.70448 1.72445 1.96832 2.21814 2.55126 3.37071 3.44544 3.73070 3.81282 3.87269 3.92902 4.03218 4.09179 4.14071 4.15554 4.18598 4.26049 4.34627 4.41151 4.50027 4.54323 4.60539 4.64969 4.71800 4.74901 4.79566 4.82406 4.87045 4.93848 4.96450 4.99861 5.01308 5.09558 5.13071 5.24197 5.26771 5.27678 5.33333 5.43290 5.46660 5.53604 5.58551 5.65135 5.80000 6.25129 6.26197 6.53169 7.30038 7.31426 8.08568 8.32690 9.29205 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011288 B = 0.002817 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.841723 B = 9938.384208 C =11914.205681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.074 0.926 4 C -0.109 4.109 5 C -0.134 4.134 6 C 0.101 3.899 7 N -0.604 5.604 8 C 0.501 3.499 9 O -0.569 6.569 10 C -0.121 4.121 11 C -0.023 4.023 12 C -0.024 4.024 13 C -0.217 4.217 14 C -0.225 4.225 15 C -0.045 4.045 16 O -0.195 6.195 17 C 0.161 3.839 18 H 0.079 0.921 19 C -0.090 4.090 20 C 0.146 3.854 21 N -0.747 5.747 22 C -0.246 4.246 23 H 0.077 0.923 24 C -0.083 4.083 25 N -0.973 5.973 26 Si 0.980 3.020 27 H -0.285 1.285 28 H -0.266 1.266 29 H -0.294 1.294 30 H 0.026 0.974 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.157 0.843 44 H 0.168 0.832 45 H 0.235 0.765 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.025 0.975 49 H 0.013 0.987 50 H 0.369 0.631 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.167 -26.026 -17.819 31.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 H 0.092 0.908 4 C -0.147 4.147 5 C -0.172 4.172 6 C -0.020 4.020 7 N -0.337 5.337 8 C 0.290 3.710 9 O -0.448 6.448 10 C -0.160 4.160 11 C -0.060 4.060 12 C -0.074 4.074 13 C -0.236 4.236 14 C -0.244 4.244 15 C -0.112 4.112 16 O -0.092 6.092 17 C 0.058 3.942 18 H 0.097 0.903 19 C -0.128 4.128 20 C 0.019 3.981 21 N -0.389 5.389 22 C -0.378 4.378 23 H 0.095 0.905 24 C -0.274 4.274 25 N -0.624 5.624 26 Si 0.808 3.192 27 H -0.212 1.212 28 H -0.191 1.191 29 H -0.220 1.220 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.105 0.895 39 H 0.131 0.869 40 H 0.139 0.861 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.175 0.825 44 H 0.186 0.814 45 H 0.252 0.748 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.043 0.957 49 H 0.031 0.969 50 H 0.200 0.800 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.830 -25.360 -17.536 31.069 hybrid contribution -0.283 0.943 1.181 1.538 sum 3.546 -24.417 -16.355 29.601 Atomic orbital electron populations 1.21790 0.95769 1.01347 1.00705 1.21541 0.95964 0.99678 0.95020 0.90803 1.21535 1.01093 0.95869 0.96159 1.21970 1.01289 0.95618 0.98302 1.22082 1.01804 0.95441 0.82711 1.48194 1.55901 1.10620 1.18964 1.21187 0.77191 0.90827 0.81784 1.90886 1.52338 1.65184 1.36432 1.21667 1.03566 0.91029 0.99776 1.19734 1.01340 0.85763 0.99203 1.22432 0.87316 0.95723 1.01915 1.21908 1.02756 0.92273 1.06642 1.22173 0.96796 1.00069 1.05375 1.24792 1.01388 0.81351 1.03665 1.84026 1.40324 1.21542 1.63284 1.21112 0.98350 0.80307 0.94477 0.90327 1.21941 1.00818 0.92807 0.97260 1.21025 0.94219 0.93165 0.89710 1.42620 1.54376 1.08136 1.33760 1.19692 1.21259 0.87318 1.09506 0.90469 1.25710 1.00174 1.02991 0.98556 1.69878 1.34587 1.37150 1.20804 0.85040 0.76635 0.79390 0.78094 1.21165 1.19095 1.22044 0.95495 0.91959 0.92470 0.90805 0.90610 0.91944 0.87950 0.87560 0.89457 0.86942 0.86087 0.88927 0.91284 0.82517 0.81422 0.74845 0.92815 0.92513 0.95670 0.96937 0.79964 0.94032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 8.20 71.98 0.59 -3.19 16 2 C -0.10 -2.47 2.29 -10.71 -0.02 -2.49 16 3 H 0.07 1.97 6.65 -2.39 -0.02 1.95 16 4 C -0.11 -1.67 5.43 30.62 0.17 -1.50 16 5 C -0.13 -1.54 5.74 30.67 0.18 -1.37 16 6 C 0.10 1.22 6.33 86.36 0.55 1.76 16 7 N -0.60 -13.30 2.41 -795.03 -1.92 -15.22 16 8 C 0.50 13.12 7.61 87.66 0.67 13.79 16 9 O -0.57 -21.34 11.38 -3.03 -0.03 -21.37 16 10 C -0.12 -2.12 4.09 29.85 0.12 -1.99 16 11 C -0.02 -0.50 5.04 29.85 0.15 -0.35 16 12 C -0.02 -0.50 6.57 24.83 0.16 -0.33 16 13 C -0.22 -3.93 10.81 22.19 0.24 -3.69 16 14 C -0.23 -3.38 10.91 22.19 0.24 -3.13 16 15 C -0.05 -0.65 12.09 66.97 0.81 0.16 16 16 O -0.19 -4.03 10.65 -2.47 -0.03 -4.06 16 17 C 0.16 4.43 2.72 44.98 0.12 4.55 16 18 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 19 C -0.09 -3.55 2.75 30.59 0.08 -3.46 16 20 C 0.15 6.59 6.05 86.38 0.52 7.12 16 21 N -0.75 -43.05 5.60 -343.46 -1.92 -44.98 16 22 C -0.25 -14.93 9.99 84.03 0.84 -14.09 16 23 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 24 C -0.08 -5.10 5.50 84.86 0.47 -4.63 16 25 N -0.97 -64.38 13.06 21.65 0.28 -64.09 16 26 Si 0.98 48.77 29.55 68.60 2.03 50.80 16 27 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 28 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 29 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 30 H 0.03 0.94 6.35 -2.39 -0.02 0.93 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.46 5.97 -2.39 -0.01 1.45 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 0.87 6.33 -2.39 -0.02 0.86 16 36 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.11 0.81 5.96 -2.39 -0.01 0.80 16 38 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.11 1.55 7.46 -2.39 -0.02 1.53 16 40 H 0.12 1.50 8.12 -2.39 -0.02 1.48 16 41 H 0.09 2.19 8.10 -2.38 -0.02 2.17 16 42 H 0.07 1.79 8.10 -2.39 -0.02 1.77 16 43 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 44 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 45 H 0.24 1.37 8.06 -2.91 -0.02 1.34 16 46 H 0.05 2.39 6.50 -2.39 -0.02 2.38 16 47 H 0.06 2.52 5.20 -2.39 -0.01 2.51 16 48 H 0.03 1.11 6.32 -2.39 -0.02 1.10 16 49 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.37 23.23 7.67 -92.71 -0.71 22.52 16 51 H 0.25 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -81.16 392.14 4.51 -76.65 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: 0.22 Total: 35.13 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 5.88 Total: -12.86 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -3.56 Total: -124.29 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.06 Total: -25.43 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 2.03 Total: 50.80 kcal Total: -81.16 4.51 -76.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656421854.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.268 kcal (2) G-P(sol) polarization free energy of solvation -81.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds