Wall clock time and date at job start Tue Mar 31 2020 17:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.52381 * 2 1 4 4 C 1.53043 * 109.49358 * 120.07860 * 2 1 3 5 5 C 1.53041 * 109.53865 * 181.31786 * 4 2 1 6 6 C 1.53184 * 109.31269 * 298.63552 * 5 4 2 7 7 N 1.46931 * 108.89695 * 54.56168 * 6 5 4 8 8 C 1.34769 * 120.62950 * 126.46253 * 7 6 5 9 9 O 1.21286 * 119.99721 * 183.49842 * 8 7 6 10 10 C 1.50702 * 120.00508 * 3.49702 * 8 7 6 11 11 C 1.53000 * 109.47181 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.46858 * 179.97438 * 11 10 8 13 13 C 1.34513 * 125.78700 * 89.71687 * 12 11 10 14 14 C 1.41380 * 106.84126 * 179.88984 * 13 12 11 15 15 C 1.34519 * 106.84196 * 0.36770 * 14 13 12 16 16 O 1.34303 * 108.41767 * 359.77466 * 15 14 13 17 17 C 1.46960 * 118.71130 * 306.64309 * 7 6 5 18 18 H 1.08998 * 109.46630 * 293.56821 * 17 7 6 19 19 C 1.53004 * 109.70786 * 173.28267 * 17 7 6 20 20 C 1.52994 * 109.47307 * 292.57090 * 19 17 7 21 21 N 1.46501 * 109.47140 * 173.64382 * 20 19 17 22 22 C 1.36940 * 120.00068 * 179.97438 * 21 20 19 23 23 H 1.08001 * 119.99674 * 359.97438 * 22 21 20 24 24 C 1.38810 * 120.00014 * 180.02562 * 22 21 20 25 25 N 1.31623 * 119.99887 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00076 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47116 * 90.00011 * 26 24 22 28 28 H 1.48500 * 109.46968 * 209.99965 * 26 24 22 29 29 H 1.48502 * 109.46896 * 329.99669 * 26 24 22 30 30 H 1.08994 * 109.47143 * 299.92214 * 1 2 3 31 31 H 1.09004 * 109.46693 * 59.92842 * 1 2 3 32 32 H 1.08997 * 109.47111 * 179.91853 * 1 2 3 33 33 H 1.08998 * 109.46190 * 61.29562 * 4 2 1 34 34 H 1.09000 * 109.45825 * 301.33516 * 4 2 1 35 35 H 1.09003 * 109.50269 * 178.67855 * 5 4 2 36 36 H 1.09007 * 109.49590 * 58.58317 * 5 4 2 37 37 H 1.09000 * 109.59226 * 174.42118 * 6 5 4 38 38 H 1.09007 * 109.58616 * 294.70188 * 6 5 4 39 39 H 1.08997 * 109.46782 * 299.99774 * 10 8 7 40 40 H 1.08997 * 109.47094 * 59.99897 * 10 8 7 41 41 H 1.08997 * 109.46969 * 299.99527 * 11 10 8 42 42 H 1.08997 * 109.47298 * 59.99890 * 11 10 8 43 43 H 1.08002 * 126.58254 * 0.02618 * 13 12 11 44 44 H 1.08004 * 126.58543 * 180.17171 * 14 13 12 45 45 H 1.07999 * 125.79100 * 179.79359 * 15 14 13 46 46 H 1.08997 * 109.46664 * 52.57258 * 19 17 7 47 47 H 1.09007 * 109.46622 * 172.56911 * 19 17 7 48 48 H 1.09008 * 109.47416 * 293.64472 * 20 19 17 49 49 H 1.08998 * 109.47139 * 53.64322 * 20 19 17 50 50 H 0.97000 * 119.99920 * 0.02562 * 21 20 19 51 51 H 0.96994 * 119.99706 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7231 1.2484 5 6 3.5708 -0.6950 1.2662 6 6 4.1052 -1.4267 0.0311 7 7 3.5049 -0.8323 -1.1710 8 6 4.2817 -0.3917 -2.1804 9 8 3.7782 0.1544 -3.1391 10 6 5.7759 -0.5776 -2.1178 11 6 6.4158 0.0074 -3.3784 12 6 7.9101 -0.1779 -3.3155 13 6 8.5907 -1.2428 -3.7761 14 6 9.9586 -0.9988 -3.5150 15 6 10.0314 0.1969 -2.9030 16 8 8.7875 0.6894 -2.7849 17 6 2.0414 -0.7239 -1.2495 18 1 1.6054 -1.7217 -1.2979 19 6 1.6489 0.0685 -2.4980 20 6 2.0988 1.5224 -2.3417 21 7 1.8605 2.2447 -3.5938 22 6 2.1867 3.5710 -3.6920 23 1 2.6193 4.0847 -2.8461 24 6 1.9604 4.2555 -4.8782 25 7 1.4318 3.6298 -5.9085 26 14 2.4061 6.0646 -5.0123 27 1 3.8049 6.1954 -5.4933 28 1 1.4886 6.7306 -5.9713 29 1 2.2791 6.7058 -3.6789 30 1 -0.3633 0.5126 0.8906 31 1 -0.3633 0.5150 -0.8894 32 1 -0.3633 -1.0276 -0.0015 33 1 1.6966 -1.7572 1.2354 34 1 1.6580 -0.2244 2.1389 35 1 3.9333 -1.1896 2.1674 36 1 3.9158 0.3389 1.2542 37 1 5.1896 -1.3247 -0.0134 38 1 3.8397 -2.4824 0.0883 39 1 6.1692 -0.0652 -1.2398 40 1 6.0073 -1.6407 -2.0521 41 1 6.0225 -0.5047 -4.2566 42 1 6.1844 1.0705 -3.4436 43 1 8.1728 -2.1156 -4.2556 44 1 10.7862 -1.6492 -3.7572 45 1 10.9365 0.6791 -2.5645 46 1 2.1308 -0.3690 -3.3723 47 1 0.5667 0.0346 -2.6245 48 1 1.5335 1.9933 -1.5374 49 1 3.1619 1.5501 -2.1030 50 1 1.4709 1.7836 -4.3531 51 1 1.2733 4.1082 -6.7372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656421855.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:00 Heat of formation + Delta-G solvation = -10.413844 kcal Electronic energy + Delta-G solvation = -30332.586087 eV Core-core repulsion = 26426.939780 eV Total energy + Delta-G solvation = -3905.646307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.47150 -41.87423 -38.74136 -36.92027 -35.36838 -34.68505 -33.96149 -33.62203 -32.56587 -30.40207 -29.35454 -27.52211 -26.64863 -25.54426 -24.41826 -23.62683 -22.63417 -22.20673 -21.38540 -20.82113 -19.71327 -19.05325 -18.34748 -17.67530 -17.06027 -17.02329 -16.76804 -16.50968 -15.81849 -15.75041 -15.40636 -15.32802 -15.09036 -14.72020 -14.45090 -14.27734 -14.25167 -13.70148 -13.65150 -13.50261 -13.41597 -13.22967 -13.18148 -13.01037 -12.90491 -12.79289 -12.50701 -12.38070 -12.24537 -12.10636 -11.95296 -11.87615 -11.67360 -11.55095 -11.35803 -11.14746 -10.82613 -10.79557 -9.87735 -9.37556 -9.31712 -8.81607 -7.91322 -5.16631 0.80968 1.40862 1.44869 1.52717 1.72295 1.80811 2.01832 2.25771 2.56437 3.40597 3.51526 3.78180 3.83969 3.87803 3.94387 4.03307 4.13021 4.14975 4.18207 4.18657 4.32434 4.34077 4.41117 4.55317 4.60373 4.64734 4.67218 4.72029 4.75854 4.88812 4.89409 4.94288 4.96244 4.98135 5.01251 5.07554 5.09546 5.15442 5.26425 5.28601 5.29968 5.38596 5.44850 5.49475 5.55099 5.59937 5.66117 5.87908 6.25730 6.31534 6.59988 7.35500 7.44855 8.19906 8.42804 9.33389 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.006697 B = 0.004762 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4180.193883 B = 5878.205938 C = 9221.246769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.050 0.950 4 C -0.107 4.107 5 C -0.134 4.134 6 C 0.103 3.897 7 N -0.609 5.609 8 C 0.485 3.515 9 O -0.535 6.535 10 C -0.117 4.117 11 C -0.022 4.022 12 C -0.025 4.025 13 C -0.213 4.213 14 C -0.222 4.222 15 C -0.049 4.049 16 O -0.199 6.199 17 C 0.166 3.834 18 H 0.088 0.912 19 C -0.116 4.116 20 C 0.186 3.814 21 N -0.735 5.735 22 C -0.234 4.234 23 H 0.063 0.937 24 C -0.080 4.080 25 N -0.972 5.972 26 Si 0.971 3.029 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.270 1.270 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.048 0.952 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.123 0.877 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.160 0.840 44 H 0.172 0.828 45 H 0.235 0.765 46 H 0.079 0.921 47 H 0.044 0.956 48 H -0.011 1.011 49 H 0.020 0.980 50 H 0.368 0.632 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.916 -18.086 17.466 28.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 H 0.068 0.932 4 C -0.145 4.145 5 C -0.172 4.172 6 C -0.019 4.019 7 N -0.343 5.343 8 C 0.274 3.726 9 O -0.412 6.412 10 C -0.157 4.157 11 C -0.059 4.059 12 C -0.075 4.075 13 C -0.232 4.232 14 C -0.241 4.241 15 C -0.115 4.115 16 O -0.096 6.096 17 C 0.062 3.938 18 H 0.106 0.894 19 C -0.154 4.154 20 C 0.060 3.940 21 N -0.375 5.375 22 C -0.366 4.366 23 H 0.081 0.919 24 C -0.272 4.272 25 N -0.624 5.624 26 Si 0.800 3.200 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.195 1.195 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.067 0.933 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.141 0.859 41 H 0.111 0.889 42 H 0.074 0.926 43 H 0.178 0.822 44 H 0.189 0.811 45 H 0.251 0.749 46 H 0.097 0.903 47 H 0.062 0.938 48 H 0.006 0.994 49 H 0.037 0.963 50 H 0.198 0.802 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.635 -17.374 17.182 27.509 hybrid contribution -0.053 1.176 -1.041 1.571 sum 12.582 -16.199 16.142 26.101 Atomic orbital electron populations 1.21765 0.94181 1.02552 1.01486 1.21587 0.96441 0.99349 0.95156 0.93160 1.21561 0.95496 1.01217 0.96217 1.21933 0.95891 1.00818 0.98529 1.22022 0.99127 0.97956 0.82746 1.48146 1.05997 1.61456 1.18696 1.21061 0.90101 0.78349 0.83058 1.91002 1.74298 1.40833 1.35103 1.21607 0.90351 1.04739 0.98999 1.19696 0.84647 1.02246 0.99351 1.22455 0.92156 0.90612 1.02245 1.21891 0.94119 1.00535 1.06688 1.22176 0.97565 0.98994 1.05350 1.24816 0.86121 0.96452 1.04125 1.84038 1.17241 1.44562 1.63795 1.21193 0.79740 0.98646 0.94208 0.89421 1.22120 0.98630 0.95531 0.99113 1.20820 0.96048 0.90641 0.86480 1.42445 1.75014 1.07817 1.12259 1.19554 1.32183 0.87828 0.97035 0.91893 1.25519 1.03197 1.02497 0.95950 1.69844 1.52082 1.37044 1.03412 0.85164 0.77119 0.80233 0.77465 1.21676 1.21656 1.19511 0.91720 0.94573 0.90830 0.90052 0.91051 0.87848 0.93280 0.88248 0.89053 0.87917 0.85861 0.88916 0.92626 0.82197 0.81065 0.74886 0.90276 0.93753 0.99373 0.96268 0.80160 0.94200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.96 71.98 0.65 -2.62 16 2 C -0.11 -2.55 1.95 -10.71 -0.02 -2.57 16 3 H 0.05 1.56 6.16 -2.39 -0.01 1.54 16 4 C -0.11 -1.69 5.17 30.62 0.16 -1.53 16 5 C -0.13 -1.84 6.08 30.67 0.19 -1.65 16 6 C 0.10 1.46 6.33 86.36 0.55 2.00 16 7 N -0.61 -14.66 2.94 -794.94 -2.34 -17.00 16 8 C 0.49 14.61 6.58 87.66 0.58 15.19 16 9 O -0.53 -22.34 9.40 -3.05 -0.03 -22.37 16 10 C -0.12 -2.64 4.06 29.85 0.12 -2.52 16 11 C -0.02 -0.61 5.04 29.85 0.15 -0.46 16 12 C -0.03 -0.65 6.58 24.83 0.16 -0.48 16 13 C -0.21 -4.62 10.81 22.19 0.24 -4.38 16 14 C -0.22 -4.03 10.91 22.19 0.24 -3.79 16 15 C -0.05 -0.90 12.09 66.97 0.81 -0.09 16 16 O -0.20 -5.23 10.65 -2.51 -0.03 -5.26 16 17 C 0.17 4.44 2.65 44.97 0.12 4.56 16 18 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 19 C -0.12 -4.46 4.17 30.59 0.13 -4.33 16 20 C 0.19 8.80 4.26 86.38 0.37 9.17 16 21 N -0.73 -43.24 5.53 -343.45 -1.90 -45.15 16 22 C -0.23 -14.71 9.99 84.03 0.84 -13.87 16 23 H 0.06 3.87 7.83 -2.91 -0.02 3.85 16 24 C -0.08 -5.06 5.50 84.86 0.47 -4.59 16 25 N -0.97 -64.88 13.06 21.65 0.28 -64.60 16 26 Si 0.97 50.29 29.55 68.60 2.03 52.32 16 27 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 28 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 29 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.04 1.04 6.79 -2.39 -0.02 1.02 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.10 1.09 5.95 -2.39 -0.01 1.08 16 38 H 0.09 0.90 8.14 -2.38 -0.02 0.89 16 39 H 0.10 2.06 7.54 -2.39 -0.02 2.04 16 40 H 0.12 1.96 8.07 -2.39 -0.02 1.94 16 41 H 0.09 2.74 8.10 -2.39 -0.02 2.72 16 42 H 0.05 1.99 8.10 -2.39 -0.02 1.97 16 43 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 44 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 45 H 0.23 2.28 8.06 -2.91 -0.02 2.26 16 46 H 0.08 3.44 5.78 -16.68 -0.10 3.34 16 47 H 0.04 1.70 7.00 -2.38 -0.02 1.69 16 48 H -0.01 -0.54 6.61 -2.38 -0.02 -0.56 16 49 H 0.02 0.97 5.27 -2.39 -0.01 0.96 16 50 H 0.37 23.18 7.67 -92.71 -0.71 22.47 16 51 H 0.25 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -82.91 392.07 3.89 -79.03 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: 0.13 Total: 34.99 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 5.74 Total: -11.96 kcal Atomic # 7 Polarization: -122.79 SS G_CDS: -3.95 Total: -126.74 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.06 Total: -27.63 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 2.03 Total: 52.32 kcal Total: -82.91 3.89 -79.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656421855.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.614 kcal (2) G-P(sol) polarization free energy of solvation -82.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds