Wall clock time and date at job start Tue Mar 31 2020 17:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.52309 * 2 1 4 4 C 1.53038 * 109.49995 * 120.08673 * 2 1 3 5 5 C 1.53035 * 109.54099 * 58.58365 * 4 2 1 6 6 C 1.53193 * 109.30911 * 61.36552 * 5 4 2 7 7 N 1.46920 * 108.77784 * 305.36489 * 6 5 4 8 8 C 1.34779 * 120.63159 * 233.63031 * 7 6 5 9 9 O 1.21278 * 120.00362 * 185.54902 * 8 7 6 10 10 C 1.50701 * 119.99769 * 5.54817 * 8 7 6 11 11 C 1.53002 * 109.46822 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.46822 * 179.97438 * 11 10 8 13 13 C 1.34512 * 125.78866 * 89.72215 * 12 11 10 14 14 C 1.41384 * 106.84436 * 179.88825 * 13 12 11 15 15 C 1.34514 * 106.83644 * 0.37038 * 14 13 12 16 16 O 1.34306 * 108.42429 * 359.77159 * 15 14 13 17 17 C 1.46924 * 118.74167 * 53.61079 * 7 6 5 18 18 H 1.09003 * 109.58520 * 66.17501 * 17 7 6 19 19 C 1.52991 * 109.70662 * 186.53676 * 17 7 6 20 20 C 1.53004 * 109.47300 * 178.14977 * 19 17 7 21 21 N 1.46502 * 109.47303 * 184.84763 * 20 19 17 22 22 C 1.36935 * 119.99981 * 179.97438 * 21 20 19 23 23 H 1.08003 * 119.99979 * 0.02562 * 22 21 20 24 24 C 1.38807 * 120.00066 * 180.02562 * 22 21 20 25 25 N 1.31620 * 120.00005 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99991 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.47084 * 90.00084 * 26 24 22 28 28 H 1.48504 * 109.47071 * 210.00192 * 26 24 22 29 29 H 1.48504 * 109.46933 * 329.99960 * 26 24 22 30 30 H 1.09001 * 109.47080 * 299.91329 * 1 2 3 31 31 H 1.09001 * 109.47571 * 59.91388 * 1 2 3 32 32 H 1.09004 * 109.47111 * 179.91641 * 1 2 3 33 33 H 1.09009 * 109.45574 * 298.56296 * 4 2 1 34 34 H 1.09002 * 109.44541 * 178.60332 * 4 2 1 35 35 H 1.09003 * 109.49728 * 301.41850 * 5 4 2 36 36 H 1.08999 * 109.49825 * 181.32015 * 5 4 2 37 37 H 1.08996 * 109.58413 * 65.15814 * 6 5 4 38 38 H 1.09004 * 109.58174 * 185.57656 * 6 5 4 39 39 H 1.08990 * 109.47371 * 300.00057 * 10 8 7 40 40 H 1.09000 * 109.47030 * 60.00437 * 10 8 7 41 41 H 1.08994 * 109.47743 * 299.99891 * 11 10 8 42 42 H 1.09000 * 109.46673 * 60.00572 * 11 10 8 43 43 H 1.08007 * 126.58305 * 0.02562 * 13 12 11 44 44 H 1.07995 * 126.58220 * 180.11655 * 14 13 12 45 45 H 1.07996 * 125.79085 * 179.79379 * 15 14 13 46 46 H 1.09006 * 109.47050 * 298.14619 * 19 17 7 47 47 H 1.08993 * 109.47662 * 58.14534 * 19 17 7 48 48 H 1.09004 * 109.46763 * 304.85200 * 20 19 17 49 49 H 1.09005 * 109.47090 * 64.84588 * 20 19 17 50 50 H 0.96994 * 120.00021 * 0.02562 * 21 20 19 51 51 H 0.97009 * 119.99782 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7232 1.2482 5 6 1.5031 -2.1558 1.2659 6 6 2.0140 -2.9039 0.0305 7 7 1.6515 -2.1381 -1.1697 8 6 0.9739 -2.7217 -2.1781 9 8 0.7683 -2.1097 -3.2047 10 6 0.4719 -4.1349 -2.0299 11 6 -0.2585 -4.5532 -3.3076 12 6 -0.7600 -5.9666 -3.1596 13 6 -1.9571 -6.3287 -2.6647 14 6 -2.0097 -7.7408 -2.7116 15 6 -0.8382 -8.1575 -3.2247 16 8 -0.0851 -7.0785 -3.4943 17 6 2.0412 -0.7237 -1.2497 18 1 3.1274 -0.6462 -1.2982 19 6 1.4255 -0.0888 -2.4981 20 6 1.7965 1.3946 -2.5517 21 7 1.1133 2.0284 -3.6821 22 6 1.2941 3.3628 -3.9306 23 1 1.9408 3.9480 -3.2935 24 6 0.6464 3.9635 -5.0013 25 7 0.8206 5.2460 -5.2404 26 14 -0.4716 2.9512 -6.1036 27 1 -1.8563 2.9841 -5.5683 28 1 -0.4579 3.5176 -7.4763 29 1 0.0109 1.5473 -6.1426 30 1 -0.3633 0.5125 0.8908 31 1 -0.3634 0.5152 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6988 -0.1959 2.1389 34 1 3.1305 -0.7444 1.2349 35 1 0.4133 -2.1355 1.2539 36 1 1.8481 -2.6629 2.1669 37 1 3.0979 -3.0042 0.0865 38 1 1.5554 -3.8918 -0.0140 39 1 1.3149 -4.8037 -1.8573 40 1 -0.2145 -4.1899 -1.1849 41 1 -1.1016 -3.8843 -3.4798 42 1 0.4276 -4.4981 -4.1528 43 1 -2.7309 -5.6676 -2.3031 44 1 -2.8310 -8.3653 -2.3924 45 1 -0.5518 -9.1852 -3.3919 46 1 1.8070 -0.5911 -3.3871 47 1 0.3410 -0.1909 -2.4604 48 1 1.4910 1.8793 -1.6243 49 1 2.8748 1.4952 -2.6761 50 1 0.5322 1.5030 -4.2540 51 1 0.3682 5.6656 -5.9889 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656421856.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:05 Heat of formation + Delta-G solvation = -2.201228 kcal Electronic energy + Delta-G solvation = -29764.272076 eV Core-core repulsion = 25858.981895 eV Total energy + Delta-G solvation = -3905.290181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.82536 -40.88332 -38.03217 -35.52828 -34.34692 -33.62819 -33.05791 -32.72387 -31.04100 -29.42041 -28.48736 -26.82517 -25.64862 -24.12018 -23.80753 -22.02479 -21.95159 -20.89156 -20.67420 -19.92011 -18.48290 -17.79249 -17.39692 -16.74367 -16.38462 -16.03965 -15.67075 -15.32227 -14.83185 -14.67878 -14.47564 -14.26275 -13.95907 -13.61379 -13.40856 -13.14832 -13.09547 -12.93488 -12.88698 -12.81474 -12.55351 -12.44959 -12.26377 -11.89328 -11.73911 -11.41744 -11.31747 -11.27890 -11.08628 -10.90347 -10.80664 -10.55584 -10.34696 -10.19899 -10.15743 -10.02580 -9.48834 -8.93874 -8.76074 -8.65812 -8.55237 -7.08538 -5.66712 -3.00266 1.44282 2.33020 2.58179 2.67922 2.94563 3.48322 3.54731 3.55675 4.19831 4.47815 4.55233 4.65593 4.67130 4.70850 4.71454 4.77039 4.78485 4.89355 4.92769 5.08267 5.09216 5.24388 5.27921 5.41355 5.46159 5.52746 5.54260 5.62089 5.63300 5.67323 5.68679 5.72147 5.73420 5.82333 5.89926 5.93457 6.00411 6.04109 6.17521 6.20265 6.23313 6.26439 6.43526 6.51480 6.61912 6.87480 6.98916 7.10786 7.38453 8.11147 8.19214 8.53446 9.34162 10.07448 10.28935 11.51973 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010190 B = 0.003214 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.123627 B = 8710.354379 C =10894.155580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 H 0.090 0.910 4 C -0.115 4.115 5 C -0.138 4.138 6 C 0.107 3.893 7 N -0.607 5.607 8 C 0.512 3.488 9 O -0.519 6.519 10 C -0.137 4.137 11 C -0.027 4.027 12 C -0.006 4.006 13 C -0.212 4.212 14 C -0.214 4.214 15 C -0.047 4.047 16 O -0.176 6.176 17 C 0.157 3.843 18 H 0.071 0.929 19 C -0.123 4.123 20 C 0.150 3.850 21 N -0.754 5.754 22 C -0.238 4.238 23 H 0.088 0.912 24 C 0.001 3.999 25 N -0.938 5.938 26 Si 0.883 3.117 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.274 1.274 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.148 0.852 44 H 0.147 0.853 45 H 0.201 0.799 46 H 0.090 0.910 47 H 0.073 0.927 48 H 0.025 0.975 49 H 0.019 0.981 50 H 0.362 0.638 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.846 -28.419 14.835 32.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 H 0.108 0.892 4 C -0.153 4.153 5 C -0.176 4.176 6 C -0.016 4.016 7 N -0.341 5.341 8 C 0.299 3.701 9 O -0.395 6.395 10 C -0.177 4.177 11 C -0.064 4.064 12 C -0.056 4.056 13 C -0.231 4.231 14 C -0.233 4.233 15 C -0.114 4.114 16 O -0.072 6.072 17 C 0.054 3.946 18 H 0.089 0.911 19 C -0.160 4.160 20 C 0.023 3.977 21 N -0.400 5.400 22 C -0.368 4.368 23 H 0.106 0.894 24 C -0.194 4.194 25 N -0.586 5.586 26 Si 0.713 3.287 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.200 1.200 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.109 0.891 43 H 0.166 0.834 44 H 0.165 0.835 45 H 0.218 0.782 46 H 0.109 0.891 47 H 0.091 0.909 48 H 0.043 0.957 49 H 0.037 0.963 50 H 0.195 0.805 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.575 -27.857 14.180 31.264 hybrid contribution -1.038 -0.809 -0.541 1.423 sum -1.613 -28.667 13.639 31.787 Atomic orbital electron populations 1.21876 0.94791 1.01384 1.02296 1.21591 0.96922 1.00168 0.93825 0.89170 1.21564 1.00428 0.95150 0.98127 1.21967 1.01814 0.96555 0.97243 1.21740 1.00360 0.94933 0.84578 1.48126 1.56491 1.11483 1.17987 1.20489 0.78007 0.88230 0.83327 1.90838 1.56548 1.63899 1.28228 1.21734 1.01696 0.94712 0.99597 1.19883 1.02127 0.86120 0.98279 1.22511 0.92523 0.88036 1.02513 1.21643 0.98583 0.95566 1.07300 1.21848 0.99480 0.95288 1.06656 1.24022 0.91742 0.91159 1.04502 1.84036 1.42836 1.14249 1.66091 1.21284 0.98584 0.78652 0.96043 0.91110 1.22335 1.01764 0.95275 0.96650 1.20811 0.95269 0.90702 0.90942 1.42694 1.56353 1.08098 1.32821 1.19077 1.23554 0.83846 1.10371 0.89374 1.24656 1.00399 0.95660 0.98686 1.69713 1.47490 1.09583 1.31862 0.86546 0.81362 0.80115 0.80658 1.21177 1.21849 1.20003 0.93082 0.91429 0.93056 0.91661 0.91859 0.91033 0.91030 0.91294 0.89941 0.88852 0.88675 0.87818 0.89071 0.83444 0.83542 0.78229 0.89144 0.90898 0.95711 0.96262 0.80522 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.20 37.16 0.30 -1.49 16 2 C -0.11 -1.23 2.25 -90.50 -0.20 -1.43 16 3 H 0.09 1.15 6.62 -51.93 -0.34 0.81 16 4 C -0.12 -0.99 5.43 -26.69 -0.14 -1.13 16 5 C -0.14 -0.96 5.74 -26.61 -0.15 -1.12 16 6 C 0.11 0.78 6.35 -3.71 -0.02 0.75 16 7 N -0.61 -6.56 2.41 -165.23 -0.40 -6.96 16 8 C 0.51 6.19 7.53 -10.98 -0.08 6.11 16 9 O -0.52 -8.45 11.55 5.56 0.06 -8.39 16 10 C -0.14 -1.18 4.04 -27.88 -0.11 -1.29 16 11 C -0.03 -0.26 5.04 -27.88 -0.14 -0.40 16 12 C -0.01 -0.06 6.58 -35.62 -0.23 -0.29 16 13 C -0.21 -1.95 10.81 -39.70 -0.43 -2.38 16 14 C -0.21 -1.73 10.91 -39.70 -0.43 -2.17 16 15 C -0.05 -0.36 12.09 29.42 0.36 -0.01 16 16 O -0.18 -1.79 10.65 5.69 0.06 -1.73 16 17 C 0.16 2.04 2.73 -67.60 -0.18 1.86 16 18 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 19 C -0.12 -2.12 2.76 -26.73 -0.07 -2.19 16 20 C 0.15 3.10 5.98 -4.04 -0.02 3.08 16 21 N -0.75 -19.40 5.41 -59.90 -0.32 -19.73 16 22 C -0.24 -7.12 10.47 -15.06 -0.16 -7.28 16 23 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 24 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 25 N -0.94 -30.58 13.97 55.49 0.78 -29.81 16 26 Si 0.88 23.51 27.73 -169.99 -4.71 18.80 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 28 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 29 H -0.27 -7.07 6.52 56.52 0.37 -6.70 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.02 6.36 -51.93 -0.33 0.69 16 32 H 0.05 0.59 5.97 -51.93 -0.31 0.28 16 33 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.55 6.34 -51.93 -0.33 0.22 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.45 5.93 -51.93 -0.31 0.14 16 39 H 0.09 0.68 7.71 -51.93 -0.40 0.28 16 40 H 0.09 0.67 7.92 -51.93 -0.41 0.26 16 41 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 42 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 43 H 0.15 1.16 8.06 -52.48 -0.42 0.74 16 44 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.20 0.80 8.06 -52.49 -0.42 0.37 16 46 H 0.09 1.76 6.25 -51.93 -0.32 1.43 16 47 H 0.07 1.35 5.53 -51.93 -0.29 1.06 16 48 H 0.03 0.50 6.28 -51.93 -0.33 0.18 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.36 9.34 5.53 -40.82 -0.23 9.11 16 51 H 0.26 8.00 8.31 -40.82 -0.34 7.66 16 LS Contribution 389.05 15.07 5.86 5.86 Total: -1.00 -35.75 389.05 -8.76 -44.52 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -8.26 Total: 6.86 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.83 Total: -9.44 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.05 Total: -56.49 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.12 Total: -10.12 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -4.71 Total: 18.80 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.75 -8.76 -44.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656421856.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.316 kcal (2) G-P(sol) polarization free energy of solvation -35.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds