Wall clock time and date at job start Tue Mar 31 2020 17:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.52309 * 2 1 4 4 C 1.53038 * 109.49995 * 120.08673 * 2 1 3 5 5 C 1.53035 * 109.54099 * 58.58365 * 4 2 1 6 6 C 1.53193 * 109.30911 * 61.36552 * 5 4 2 7 7 N 1.46920 * 108.77784 * 305.36489 * 6 5 4 8 8 C 1.34779 * 120.63159 * 233.63031 * 7 6 5 9 9 O 1.21278 * 120.00362 * 185.54902 * 8 7 6 10 10 C 1.50701 * 119.99769 * 5.54817 * 8 7 6 11 11 C 1.53002 * 109.46822 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.46822 * 179.97438 * 11 10 8 13 13 C 1.34512 * 125.78866 * 89.72215 * 12 11 10 14 14 C 1.41384 * 106.84436 * 179.88825 * 13 12 11 15 15 C 1.34514 * 106.83644 * 0.37038 * 14 13 12 16 16 O 1.34306 * 108.42429 * 359.77159 * 15 14 13 17 17 C 1.46924 * 118.74167 * 53.61079 * 7 6 5 18 18 H 1.09003 * 109.58520 * 66.17501 * 17 7 6 19 19 C 1.52991 * 109.70662 * 186.53676 * 17 7 6 20 20 C 1.53004 * 109.47300 * 178.14977 * 19 17 7 21 21 N 1.46502 * 109.47303 * 184.84763 * 20 19 17 22 22 C 1.36935 * 119.99981 * 179.97438 * 21 20 19 23 23 H 1.08003 * 119.99979 * 0.02562 * 22 21 20 24 24 C 1.38807 * 120.00066 * 180.02562 * 22 21 20 25 25 N 1.31620 * 120.00005 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99991 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.47084 * 90.00084 * 26 24 22 28 28 H 1.48504 * 109.47071 * 210.00192 * 26 24 22 29 29 H 1.48504 * 109.46933 * 329.99960 * 26 24 22 30 30 H 1.09001 * 109.47080 * 299.91329 * 1 2 3 31 31 H 1.09001 * 109.47571 * 59.91388 * 1 2 3 32 32 H 1.09004 * 109.47111 * 179.91641 * 1 2 3 33 33 H 1.09009 * 109.45574 * 298.56296 * 4 2 1 34 34 H 1.09002 * 109.44541 * 178.60332 * 4 2 1 35 35 H 1.09003 * 109.49728 * 301.41850 * 5 4 2 36 36 H 1.08999 * 109.49825 * 181.32015 * 5 4 2 37 37 H 1.08996 * 109.58413 * 65.15814 * 6 5 4 38 38 H 1.09004 * 109.58174 * 185.57656 * 6 5 4 39 39 H 1.08990 * 109.47371 * 300.00057 * 10 8 7 40 40 H 1.09000 * 109.47030 * 60.00437 * 10 8 7 41 41 H 1.08994 * 109.47743 * 299.99891 * 11 10 8 42 42 H 1.09000 * 109.46673 * 60.00572 * 11 10 8 43 43 H 1.08007 * 126.58305 * 0.02562 * 13 12 11 44 44 H 1.07995 * 126.58220 * 180.11655 * 14 13 12 45 45 H 1.07996 * 125.79085 * 179.79379 * 15 14 13 46 46 H 1.09006 * 109.47050 * 298.14619 * 19 17 7 47 47 H 1.08993 * 109.47662 * 58.14534 * 19 17 7 48 48 H 1.09004 * 109.46763 * 304.85200 * 20 19 17 49 49 H 1.09005 * 109.47090 * 64.84588 * 20 19 17 50 50 H 0.96994 * 120.00021 * 0.02562 * 21 20 19 51 51 H 0.97009 * 119.99782 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7232 1.2482 5 6 1.5031 -2.1558 1.2659 6 6 2.0140 -2.9039 0.0305 7 7 1.6515 -2.1381 -1.1697 8 6 0.9739 -2.7217 -2.1781 9 8 0.7683 -2.1097 -3.2047 10 6 0.4719 -4.1349 -2.0299 11 6 -0.2585 -4.5532 -3.3076 12 6 -0.7600 -5.9666 -3.1596 13 6 -1.9571 -6.3287 -2.6647 14 6 -2.0097 -7.7408 -2.7116 15 6 -0.8382 -8.1575 -3.2247 16 8 -0.0851 -7.0785 -3.4943 17 6 2.0412 -0.7237 -1.2497 18 1 3.1274 -0.6462 -1.2982 19 6 1.4255 -0.0888 -2.4981 20 6 1.7965 1.3946 -2.5517 21 7 1.1133 2.0284 -3.6821 22 6 1.2941 3.3628 -3.9306 23 1 1.9408 3.9480 -3.2935 24 6 0.6464 3.9635 -5.0013 25 7 0.8206 5.2460 -5.2404 26 14 -0.4716 2.9512 -6.1036 27 1 -1.8563 2.9841 -5.5683 28 1 -0.4579 3.5176 -7.4763 29 1 0.0109 1.5473 -6.1426 30 1 -0.3633 0.5125 0.8908 31 1 -0.3634 0.5152 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6988 -0.1959 2.1389 34 1 3.1305 -0.7444 1.2349 35 1 0.4133 -2.1355 1.2539 36 1 1.8481 -2.6629 2.1669 37 1 3.0979 -3.0042 0.0865 38 1 1.5554 -3.8918 -0.0140 39 1 1.3149 -4.8037 -1.8573 40 1 -0.2145 -4.1899 -1.1849 41 1 -1.1016 -3.8843 -3.4798 42 1 0.4276 -4.4981 -4.1528 43 1 -2.7309 -5.6676 -2.3031 44 1 -2.8310 -8.3653 -2.3924 45 1 -0.5518 -9.1852 -3.3919 46 1 1.8070 -0.5911 -3.3871 47 1 0.3410 -0.1909 -2.4604 48 1 1.4910 1.8793 -1.6243 49 1 2.8748 1.4952 -2.6761 50 1 0.5322 1.5030 -4.2540 51 1 0.3682 5.6656 -5.9889 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656421856.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:04 Heat of formation + Delta-G solvation = -24.227977 kcal Electronic energy + Delta-G solvation = -29765.227228 eV Core-core repulsion = 25858.981895 eV Total energy + Delta-G solvation = -3906.245332 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.46973 -41.82653 -38.97836 -37.16906 -35.40660 -34.60638 -34.13860 -33.66189 -32.87074 -30.32801 -29.68331 -27.83433 -26.63709 -25.37826 -24.81809 -23.57891 -22.64426 -22.19076 -21.37175 -20.82243 -19.72999 -19.31570 -18.33750 -17.62372 -17.26243 -16.86323 -16.76821 -16.35173 -16.33009 -15.77238 -15.55770 -15.31249 -15.18223 -14.84430 -14.68407 -14.37036 -14.21923 -13.91744 -13.84652 -13.71492 -13.50828 -13.28282 -13.27271 -13.06526 -12.97581 -12.86459 -12.51122 -12.39197 -12.28050 -12.09804 -12.05856 -11.87173 -11.80131 -11.69780 -11.32679 -11.22211 -10.96425 -10.83407 -10.00271 -9.48275 -9.35582 -9.30095 -8.06465 -5.38594 0.80197 1.34370 1.35897 1.44967 1.67694 1.71070 1.95810 2.20400 2.44672 3.24601 3.38232 3.64524 3.78056 3.85396 3.91982 3.96183 4.03286 4.10839 4.14294 4.17521 4.24804 4.33361 4.38205 4.43428 4.51829 4.59752 4.60326 4.69376 4.73880 4.79764 4.81768 4.85577 4.93148 4.95828 4.99444 5.01217 5.08709 5.13597 5.23325 5.26774 5.27419 5.32600 5.41633 5.47538 5.56526 5.63789 5.71397 5.77037 6.18863 6.24016 6.51540 7.04222 7.27730 7.82517 8.01598 9.15143 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010190 B = 0.003214 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.123627 B = 8710.354379 C =10894.155580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.072 0.928 4 C -0.111 4.111 5 C -0.133 4.133 6 C 0.101 3.899 7 N -0.603 5.603 8 C 0.505 3.495 9 O -0.570 6.570 10 C -0.123 4.123 11 C -0.022 4.022 12 C -0.024 4.024 13 C -0.218 4.218 14 C -0.227 4.227 15 C -0.044 4.044 16 O -0.194 6.194 17 C 0.161 3.839 18 H 0.075 0.925 19 C -0.101 4.101 20 C 0.148 3.852 21 N -0.760 5.760 22 C -0.233 4.233 23 H 0.059 0.941 24 C -0.062 4.062 25 N -0.981 5.981 26 Si 0.952 3.048 27 H -0.276 1.276 28 H -0.289 1.289 29 H -0.264 1.264 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.156 0.844 44 H 0.167 0.833 45 H 0.235 0.765 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.031 0.969 49 H 0.016 0.984 50 H 0.362 0.638 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.219 -32.157 16.863 36.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.090 0.910 4 C -0.148 4.148 5 C -0.171 4.171 6 C -0.020 4.020 7 N -0.336 5.336 8 C 0.294 3.706 9 O -0.450 6.450 10 C -0.162 4.162 11 C -0.060 4.060 12 C -0.073 4.073 13 C -0.237 4.237 14 C -0.246 4.246 15 C -0.111 4.111 16 O -0.091 6.091 17 C 0.057 3.943 18 H 0.093 0.907 19 C -0.139 4.139 20 C 0.022 3.978 21 N -0.405 5.405 22 C -0.364 4.364 23 H 0.077 0.923 24 C -0.253 4.253 25 N -0.632 5.632 26 Si 0.780 3.220 27 H -0.203 1.203 28 H -0.216 1.216 29 H -0.189 1.189 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.173 0.827 44 H 0.184 0.816 45 H 0.251 0.749 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.049 0.951 49 H 0.034 0.966 50 H 0.195 0.805 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.929 -31.645 16.274 35.596 hybrid contribution -0.871 0.338 -1.098 1.441 sum -1.800 -31.307 15.176 34.838 Atomic orbital electron populations 1.21816 0.95336 1.01677 1.00986 1.21547 0.96363 0.99564 0.94871 0.90956 1.21541 1.00940 0.96047 0.96285 1.21963 1.01539 0.95374 0.98175 1.22083 1.01580 0.95546 0.82837 1.48200 1.55774 1.10554 1.19059 1.21137 0.77402 0.89357 0.82689 1.90816 1.58517 1.65390 1.30266 1.21672 1.02594 0.92268 0.99675 1.19741 1.01407 0.86431 0.98392 1.22450 0.93079 0.87926 1.03882 1.21904 0.98409 0.96536 1.06833 1.22175 1.00401 0.95010 1.06977 1.24777 0.91361 0.91903 1.03075 1.84026 1.43643 1.14858 1.66539 1.21071 0.98414 0.80293 0.94481 0.90707 1.22055 1.00981 0.92599 0.98253 1.21003 0.94475 0.92982 0.89337 1.42780 1.56774 1.06770 1.34170 1.19078 1.22315 0.85410 1.09592 0.92259 1.25442 1.02504 0.96845 1.00534 1.69872 1.49085 1.11433 1.32824 0.85443 0.79385 0.78805 0.78395 1.20255 1.21560 1.18890 0.92026 0.95016 0.91945 0.90858 0.91016 0.91398 0.88180 0.89914 0.87360 0.86784 0.86365 0.88948 0.90869 0.82653 0.81564 0.74866 0.91322 0.92274 0.95117 0.96572 0.80523 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.20 71.98 0.59 -2.78 16 2 C -0.10 -2.31 2.25 -10.72 -0.02 -2.34 16 3 H 0.07 1.85 6.62 -2.39 -0.02 1.83 16 4 C -0.11 -1.57 5.43 30.62 0.17 -1.41 16 5 C -0.13 -1.31 5.74 30.67 0.18 -1.13 16 6 C 0.10 1.07 6.35 86.36 0.55 1.62 16 7 N -0.60 -11.94 2.41 -795.04 -1.91 -13.85 16 8 C 0.50 11.74 7.53 87.66 0.66 12.40 16 9 O -0.57 -19.02 11.55 -3.02 -0.03 -19.06 16 10 C -0.12 -1.86 4.04 29.85 0.12 -1.74 16 11 C -0.02 -0.42 5.04 29.85 0.15 -0.27 16 12 C -0.02 -0.44 6.58 24.83 0.16 -0.28 16 13 C -0.22 -3.64 10.81 22.19 0.24 -3.40 16 14 C -0.23 -3.14 10.91 22.19 0.24 -2.90 16 15 C -0.04 -0.58 12.09 66.97 0.81 0.23 16 16 O -0.19 -3.64 10.65 -2.55 -0.03 -3.67 16 17 C 0.16 4.09 2.73 44.97 0.12 4.21 16 18 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 19 C -0.10 -3.59 2.76 30.59 0.08 -3.50 16 20 C 0.15 6.32 5.98 86.38 0.52 6.84 16 21 N -0.76 -40.08 5.41 -343.43 -1.86 -41.94 16 22 C -0.23 -14.36 10.47 84.03 0.88 -13.48 16 23 H 0.06 3.92 8.06 -2.91 -0.02 3.90 16 24 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16 25 N -0.98 -65.66 13.97 21.65 0.30 -65.36 16 26 Si 0.95 49.58 27.73 68.60 1.90 51.49 16 27 H -0.28 -13.94 7.11 99.48 0.71 -13.24 16 28 H -0.29 -14.86 7.11 99.48 0.71 -14.16 16 29 H -0.26 -13.14 6.52 99.48 0.65 -12.49 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.03 0.97 6.36 -2.39 -0.02 0.96 16 32 H 0.06 1.33 5.97 -2.38 -0.01 1.32 16 33 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 0.76 6.34 -2.39 -0.02 0.75 16 36 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.11 0.65 5.93 -2.39 -0.01 0.63 16 39 H 0.11 1.29 7.71 -2.39 -0.02 1.27 16 40 H 0.12 1.28 7.92 -2.39 -0.02 1.26 16 41 H 0.09 1.94 8.10 -2.39 -0.02 1.92 16 42 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 43 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 44 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 45 H 0.24 1.07 8.06 -2.91 -0.02 1.04 16 46 H 0.07 2.77 6.25 -2.38 -0.01 2.75 16 47 H 0.06 2.27 5.53 -2.39 -0.01 2.26 16 48 H 0.03 1.29 6.28 -2.39 -0.01 1.27 16 49 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 50 H 0.36 18.96 5.53 -92.71 -0.51 18.44 16 51 H 0.26 16.41 8.31 -92.70 -0.77 15.64 16 Total: -1.00 -80.82 389.05 4.64 -76.18 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.36 Total: 27.54 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 5.91 Total: -11.33 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -3.47 Total: -121.15 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.06 Total: -22.72 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 1.90 Total: 51.49 kcal Total: -80.82 4.64 -76.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656421856.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.950 kcal (2) G-P(sol) polarization free energy of solvation -80.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds