Wall clock time and date at job start Tue Mar 31 2020 20:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47026 * 2 1 4 4 C 1.53005 * 109.46926 * 240.00253 * 2 1 3 5 5 C 1.50696 * 109.47087 * 64.99949 * 4 2 1 6 6 C 1.38232 * 120.00276 * 269.72362 * 5 4 2 7 7 C 1.38228 * 120.00339 * 179.76766 * 6 5 4 8 8 C 1.38239 * 119.99750 * 0.50651 * 7 6 5 9 9 C 1.38230 * 119.99938 * 359.75407 * 8 7 6 10 10 C 1.38235 * 119.99793 * 90.00169 * 5 4 2 11 11 C 1.50698 * 109.47402 * 120.00378 * 2 1 3 12 12 O 1.21278 * 120.00097 * 109.20379 * 11 2 1 13 13 N 1.34777 * 119.99730 * 289.20642 * 11 2 1 14 14 C 1.46504 * 119.99922 * 186.08917 * 13 11 2 15 15 C 1.46503 * 120.00177 * 6.09395 * 13 11 2 16 16 C 1.53003 * 109.47294 * 96.12193 * 15 13 11 17 17 H 1.08999 * 109.46981 * 302.59204 * 16 15 13 18 18 O 1.42901 * 109.46606 * 62.58993 * 16 15 13 19 19 C 1.52992 * 109.47023 * 182.58723 * 16 15 13 20 20 N 1.46499 * 109.47348 * 180.02562 * 19 16 15 21 21 C 1.46505 * 119.99875 * 270.00300 * 20 19 16 22 22 C 1.36935 * 120.00467 * 89.99501 * 20 19 16 23 23 H 1.07997 * 119.99754 * 326.58253 * 22 20 19 24 24 C 1.38809 * 119.99986 * 146.29454 * 22 20 19 25 25 N 1.31621 * 119.99750 * 4.14110 * 24 22 20 26 26 Si 1.86797 * 119.99927 * 184.13214 * 24 22 20 27 27 H 1.48499 * 109.47017 * 60.00857 * 26 24 22 28 28 H 1.48503 * 109.46951 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47393 * 300.00414 * 26 24 22 30 30 H 1.08997 * 109.47094 * 309.59880 * 1 2 3 31 31 H 1.09000 * 109.47201 * 69.60251 * 1 2 3 32 32 H 1.09004 * 109.46861 * 189.59950 * 1 2 3 33 33 H 1.08998 * 109.46890 * 185.00072 * 4 2 1 34 34 H 1.09001 * 109.47121 * 304.99929 * 4 2 1 35 35 H 1.08010 * 119.99488 * 0.02562 * 6 5 4 36 36 H 1.08003 * 120.00614 * 180.23260 * 7 6 5 37 37 H 1.08003 * 119.99860 * 179.72136 * 8 7 6 38 38 H 1.07998 * 119.99955 * 179.97438 * 9 8 7 39 39 H 1.07994 * 120.00298 * 359.97438 * 10 5 4 40 40 H 1.09000 * 109.47360 * 275.11729 * 14 13 11 41 41 H 1.08997 * 109.46696 * 35.11939 * 14 13 11 42 42 H 1.09000 * 109.46711 * 155.11647 * 14 13 11 43 43 H 1.08998 * 109.46689 * 336.12715 * 15 13 11 44 44 H 1.08996 * 109.47344 * 216.12456 * 15 13 11 45 45 H 0.96701 * 114.00185 * 60.00129 * 18 16 15 46 46 H 1.09002 * 109.46955 * 60.00067 * 19 16 15 47 47 H 1.09007 * 109.47384 * 300.00275 * 19 16 15 48 48 H 1.08999 * 109.46776 * 274.63038 * 21 20 19 49 49 H 1.09004 * 109.47140 * 34.62923 * 21 20 19 50 50 H 1.08997 * 109.47068 * 154.62741 * 21 20 19 51 51 H 0.97003 * 119.99923 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 6 0.4381 -0.2088 -3.1031 7 6 0.0702 0.5085 -4.2260 8 6 0.9103 1.4845 -4.7286 9 6 2.1159 1.7467 -4.1053 10 6 2.4814 1.0330 -2.9792 11 6 2.0324 -0.7105 1.2304 12 8 2.5603 -1.7977 1.1298 13 7 1.8950 -0.1376 2.4426 14 6 2.5001 -0.7631 3.6212 15 6 1.1406 1.1105 2.5817 16 6 -0.2966 0.7938 3.0002 17 1 -0.7514 0.1305 2.2645 18 8 -0.2906 0.1548 4.2784 19 6 -1.1016 2.0922 3.0829 20 7 -2.4776 1.7891 3.4841 21 6 -3.4934 1.5118 2.4656 22 6 -2.8142 1.7648 4.8112 23 1 -2.0948 1.4323 5.5448 24 6 -4.0783 2.1731 5.2142 25 7 -4.9800 2.5059 4.3150 26 14 -4.4995 2.2498 7.0324 27 1 -3.5821 3.1985 7.7134 28 1 -5.9012 2.7119 7.1967 29 1 -4.3502 0.8997 7.6326 30 1 -0.3633 0.6550 0.7918 31 1 -0.3633 0.3582 -0.9632 32 1 -0.3633 -1.0133 0.1714 33 1 3.1263 -0.7995 -1.2057 34 1 1.6053 -1.7198 -1.2953 35 1 -0.2164 -0.9741 -2.7127 36 1 -0.8716 0.3034 -4.7133 37 1 0.6248 2.0418 -5.6086 38 1 2.7724 2.5089 -4.4982 39 1 3.4232 1.2380 -2.4922 40 1 1.8248 -1.5217 4.0169 41 1 3.4450 -1.2284 3.3407 42 1 2.6805 -0.0044 4.3827 43 1 1.1333 1.6388 1.6284 44 1 1.6103 1.7364 3.3404 45 1 0.1007 0.6888 4.9833 46 1 -1.1061 2.5796 2.1079 47 1 -0.6467 2.7556 3.8186 48 1 -3.9200 2.4508 2.1129 49 1 -3.0348 0.9843 1.6292 50 1 -4.2811 0.8941 2.8968 51 1 -5.8635 2.7909 4.5966 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677184715.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:15 Heat of formation + Delta-G solvation = -36.907766 kcal Electronic energy + Delta-G solvation = -29897.893289 eV Core-core repulsion = 25991.098120 eV Total energy + Delta-G solvation = -3906.795169 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.45228 -39.29580 -37.61640 -35.29711 -35.09747 -34.37195 -31.58511 -31.16288 -30.98174 -29.56273 -27.14951 -26.86031 -25.97660 -25.42137 -23.22646 -22.59828 -22.24479 -21.00834 -20.51878 -18.78877 -17.42007 -16.95572 -16.69441 -16.24648 -15.93324 -15.57173 -15.24657 -15.07046 -14.81189 -14.71998 -14.07066 -13.93397 -13.63357 -13.52483 -13.31981 -13.19195 -12.90412 -12.75094 -12.59779 -12.40245 -12.23554 -11.98488 -11.88615 -11.65989 -11.38155 -11.22763 -11.13554 -11.07201 -10.97325 -10.85016 -10.70569 -10.50725 -10.29278 -10.01332 -9.96971 -9.81958 -9.63447 -9.05791 -8.84031 -8.55253 -8.35414 -6.55082 -5.75697 -3.26844 1.18363 1.23985 2.66258 3.05454 3.38671 3.43961 3.44413 3.63059 4.32983 4.49149 4.64688 4.74858 4.76832 4.81418 4.89036 4.95788 4.99199 5.07139 5.19153 5.24003 5.33949 5.35794 5.42485 5.44652 5.54209 5.62368 5.67137 5.70289 5.74930 5.82559 5.84338 5.89821 5.92527 5.98272 6.00464 6.05982 6.22615 6.30804 6.35856 6.40033 6.50079 6.55048 6.69965 6.81291 6.84845 7.38550 7.41142 7.72708 7.86313 8.20610 8.25036 8.49750 9.26640 9.85201 10.39942 11.31367 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.003038 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.783815 B = 9215.361542 C =10851.144697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.101 4.101 3 H 0.094 0.906 4 C -0.061 4.061 5 C -0.077 4.077 6 C -0.113 4.113 7 C -0.118 4.118 8 C -0.126 4.126 9 C -0.120 4.120 10 C -0.118 4.118 11 C 0.518 3.482 12 O -0.547 6.547 13 N -0.604 5.604 14 C 0.094 3.906 15 C 0.070 3.930 16 C 0.059 3.941 17 H 0.098 0.902 18 O -0.540 6.540 19 C 0.123 3.877 20 N -0.590 5.590 21 C 0.163 3.837 22 C -0.249 4.249 23 H 0.067 0.933 24 C 0.007 3.993 25 N -0.908 5.908 26 Si 0.903 3.097 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.361 0.639 46 H 0.043 0.957 47 H 0.051 0.949 48 H 0.017 0.983 49 H -0.013 1.013 50 H 0.057 0.943 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.406 -0.996 -13.738 20.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.123 4.123 3 H 0.112 0.888 4 C -0.099 4.099 5 C -0.077 4.077 6 C -0.131 4.131 7 C -0.136 4.136 8 C -0.144 4.144 9 C -0.138 4.138 10 C -0.136 4.136 11 C 0.306 3.694 12 O -0.425 6.425 13 N -0.336 5.336 14 C -0.048 4.048 15 C -0.054 4.054 16 C -0.004 4.004 17 H 0.116 0.884 18 O -0.343 6.343 19 C -0.006 4.006 20 N -0.312 5.312 21 C 0.018 3.982 22 C -0.379 4.379 23 H 0.084 0.916 24 C -0.191 4.191 25 N -0.552 5.552 26 Si 0.732 3.268 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.210 1.210 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.207 0.793 46 H 0.061 0.939 47 H 0.069 0.931 48 H 0.035 0.965 49 H 0.006 0.994 50 H 0.076 0.924 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.182 -1.993 -14.091 20.809 hybrid contribution -0.178 0.694 1.306 1.489 sum 15.004 -1.300 -12.785 19.755 Atomic orbital electron populations 1.22269 0.92277 1.03456 1.04106 1.21233 0.98316 1.00404 0.92307 0.88809 1.20408 1.01658 0.98386 0.89466 1.19886 0.94638 0.96673 0.96509 1.21136 0.96207 1.00053 0.95716 1.21175 0.99627 0.96301 0.96526 1.21144 0.94761 0.98341 1.00179 1.21126 0.96868 0.99688 0.96097 1.21060 0.99657 0.96211 0.96666 1.20613 0.78613 0.85671 0.84520 1.90665 1.44781 1.20541 1.86508 1.47730 1.53025 1.25371 1.07442 1.21563 0.98019 0.98387 0.86856 1.22657 0.94100 0.85496 1.03195 1.23558 0.91844 0.98568 0.86407 0.88439 1.86650 1.84760 1.45258 1.17661 1.21351 0.87855 0.92956 0.98465 1.43610 1.03291 1.80847 1.03450 1.20811 0.91242 0.97592 0.88511 1.19078 0.98717 1.36902 0.83206 0.91574 1.25336 0.97724 0.98658 0.97380 1.70012 1.04569 1.48913 1.31689 0.86378 0.77090 0.77928 0.85375 1.20973 1.21734 1.20960 0.90268 0.90805 0.91983 0.90497 0.90040 0.85851 0.86072 0.86300 0.86245 0.86207 0.92069 0.91806 0.91435 0.89369 0.90305 0.79313 0.93913 0.93070 0.96511 0.99440 0.92401 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 8.01 37.16 0.30 -1.64 16 2 C -0.10 -1.15 1.87 -91.77 -0.17 -1.32 16 3 H 0.09 0.93 7.08 -51.93 -0.37 0.57 16 4 C -0.06 -0.67 4.14 -27.88 -0.12 -0.78 16 5 C -0.08 -0.78 4.72 -104.63 -0.49 -1.27 16 6 C -0.11 -1.12 7.84 -39.59 -0.31 -1.43 16 7 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 8 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 9 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 10 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 11 C 0.52 7.27 6.93 -10.99 -0.08 7.19 16 12 O -0.55 -9.38 15.78 5.56 0.09 -9.29 16 13 N -0.60 -7.82 2.86 -181.57 -0.52 -8.34 16 14 C 0.09 1.14 9.55 59.85 0.57 1.72 16 15 C 0.07 0.82 4.62 -4.04 -0.02 0.80 16 16 C 0.06 0.93 2.60 -26.73 -0.07 0.86 16 17 H 0.10 1.71 5.72 -51.93 -0.30 1.41 16 18 O -0.54 -9.42 11.32 -35.23 -0.40 -9.82 16 19 C 0.12 2.24 5.40 -4.05 -0.02 2.22 16 20 N -0.59 -14.18 2.86 -181.12 -0.52 -14.70 16 21 C 0.16 3.95 8.98 59.85 0.54 4.49 16 22 C -0.25 -6.62 9.07 -15.06 -0.14 -6.75 16 23 H 0.07 1.71 7.24 -52.49 -0.38 1.33 16 24 C 0.01 0.21 5.33 -17.43 -0.09 0.11 16 25 N -0.91 -26.15 10.67 55.49 0.59 -25.55 16 26 Si 0.90 21.57 29.56 -169.99 -5.02 16.55 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 29 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 30 H 0.08 1.01 3.75 -51.93 -0.19 0.81 16 31 H 0.07 0.81 5.62 -51.93 -0.29 0.52 16 32 H 0.06 0.80 8.11 -51.93 -0.42 0.38 16 33 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 34 H 0.08 0.95 8.06 -51.93 -0.42 0.54 16 35 H 0.12 1.14 7.92 -52.48 -0.42 0.72 16 36 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 41 H 0.06 0.78 7.68 -51.93 -0.40 0.38 16 42 H 0.07 0.66 7.90 -51.93 -0.41 0.25 16 43 H 0.09 0.92 5.31 -51.93 -0.28 0.64 16 44 H 0.08 0.80 7.96 -51.93 -0.41 0.39 16 45 H 0.36 5.26 9.02 45.56 0.41 5.67 16 46 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 47 H 0.05 0.91 8.04 -51.93 -0.42 0.49 16 48 H 0.02 0.43 7.79 -51.93 -0.40 0.02 16 49 H -0.01 -0.27 8.11 -51.93 -0.42 -0.69 16 50 H 0.06 1.56 6.96 -51.93 -0.36 1.20 16 51 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 400.32 15.07 6.03 6.03 Total: -1.00 -32.82 400.32 -8.99 -41.80 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -7.56 Total: 5.04 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.68 Total: -1.72 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.44 Total: -48.59 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.31 Total: -19.11 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.82 -8.99 -41.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677184715.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.896 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds