Wall clock time and date at job start Tue Mar 31 2020 20:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47026 * 2 1 4 4 C 1.53005 * 109.46926 * 240.00253 * 2 1 3 5 5 C 1.50696 * 109.47087 * 64.99949 * 4 2 1 6 6 C 1.38232 * 120.00276 * 269.72362 * 5 4 2 7 7 C 1.38228 * 120.00339 * 179.76766 * 6 5 4 8 8 C 1.38239 * 119.99750 * 0.50651 * 7 6 5 9 9 C 1.38230 * 119.99938 * 359.75407 * 8 7 6 10 10 C 1.38235 * 119.99793 * 90.00169 * 5 4 2 11 11 C 1.50698 * 109.47402 * 120.00378 * 2 1 3 12 12 O 1.21278 * 120.00097 * 109.20379 * 11 2 1 13 13 N 1.34777 * 119.99730 * 289.20642 * 11 2 1 14 14 C 1.46504 * 119.99922 * 186.08917 * 13 11 2 15 15 C 1.46503 * 120.00177 * 6.09395 * 13 11 2 16 16 C 1.53003 * 109.47294 * 96.12193 * 15 13 11 17 17 H 1.08999 * 109.46981 * 302.59204 * 16 15 13 18 18 O 1.42901 * 109.46606 * 62.58993 * 16 15 13 19 19 C 1.52992 * 109.47023 * 182.58723 * 16 15 13 20 20 N 1.46499 * 109.47348 * 180.02562 * 19 16 15 21 21 C 1.46505 * 119.99875 * 270.00300 * 20 19 16 22 22 C 1.36935 * 120.00467 * 89.99501 * 20 19 16 23 23 H 1.07997 * 119.99754 * 326.58253 * 22 20 19 24 24 C 1.38809 * 119.99986 * 146.29454 * 22 20 19 25 25 N 1.31621 * 119.99750 * 4.14110 * 24 22 20 26 26 Si 1.86797 * 119.99927 * 184.13214 * 24 22 20 27 27 H 1.48499 * 109.47017 * 60.00857 * 26 24 22 28 28 H 1.48503 * 109.46951 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47393 * 300.00414 * 26 24 22 30 30 H 1.08997 * 109.47094 * 309.59880 * 1 2 3 31 31 H 1.09000 * 109.47201 * 69.60251 * 1 2 3 32 32 H 1.09004 * 109.46861 * 189.59950 * 1 2 3 33 33 H 1.08998 * 109.46890 * 185.00072 * 4 2 1 34 34 H 1.09001 * 109.47121 * 304.99929 * 4 2 1 35 35 H 1.08010 * 119.99488 * 0.02562 * 6 5 4 36 36 H 1.08003 * 120.00614 * 180.23260 * 7 6 5 37 37 H 1.08003 * 119.99860 * 179.72136 * 8 7 6 38 38 H 1.07998 * 119.99955 * 179.97438 * 9 8 7 39 39 H 1.07994 * 120.00298 * 359.97438 * 10 5 4 40 40 H 1.09000 * 109.47360 * 275.11729 * 14 13 11 41 41 H 1.08997 * 109.46696 * 35.11939 * 14 13 11 42 42 H 1.09000 * 109.46711 * 155.11647 * 14 13 11 43 43 H 1.08998 * 109.46689 * 336.12715 * 15 13 11 44 44 H 1.08996 * 109.47344 * 216.12456 * 15 13 11 45 45 H 0.96701 * 114.00185 * 60.00129 * 18 16 15 46 46 H 1.09002 * 109.46955 * 60.00067 * 19 16 15 47 47 H 1.09007 * 109.47384 * 300.00275 * 19 16 15 48 48 H 1.08999 * 109.46776 * 274.63038 * 21 20 19 49 49 H 1.09004 * 109.47140 * 34.62923 * 21 20 19 50 50 H 1.08997 * 109.47068 * 154.62741 * 21 20 19 51 51 H 0.97003 * 119.99923 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 6 0.4381 -0.2088 -3.1031 7 6 0.0702 0.5085 -4.2260 8 6 0.9103 1.4845 -4.7286 9 6 2.1159 1.7467 -4.1053 10 6 2.4814 1.0330 -2.9792 11 6 2.0324 -0.7105 1.2304 12 8 2.5603 -1.7977 1.1298 13 7 1.8950 -0.1376 2.4426 14 6 2.5001 -0.7631 3.6212 15 6 1.1406 1.1105 2.5817 16 6 -0.2966 0.7938 3.0002 17 1 -0.7514 0.1305 2.2645 18 8 -0.2906 0.1548 4.2784 19 6 -1.1016 2.0922 3.0829 20 7 -2.4776 1.7891 3.4841 21 6 -3.4934 1.5118 2.4656 22 6 -2.8142 1.7648 4.8112 23 1 -2.0948 1.4323 5.5448 24 6 -4.0783 2.1731 5.2142 25 7 -4.9800 2.5059 4.3150 26 14 -4.4995 2.2498 7.0324 27 1 -3.5821 3.1985 7.7134 28 1 -5.9012 2.7119 7.1967 29 1 -4.3502 0.8997 7.6326 30 1 -0.3633 0.6550 0.7918 31 1 -0.3633 0.3582 -0.9632 32 1 -0.3633 -1.0133 0.1714 33 1 3.1263 -0.7995 -1.2057 34 1 1.6053 -1.7198 -1.2953 35 1 -0.2164 -0.9741 -2.7127 36 1 -0.8716 0.3034 -4.7133 37 1 0.6248 2.0418 -5.6086 38 1 2.7724 2.5089 -4.4982 39 1 3.4232 1.2380 -2.4922 40 1 1.8248 -1.5217 4.0169 41 1 3.4450 -1.2284 3.3407 42 1 2.6805 -0.0044 4.3827 43 1 1.1333 1.6388 1.6284 44 1 1.6103 1.7364 3.3404 45 1 0.1007 0.6888 4.9833 46 1 -1.1061 2.5796 2.1079 47 1 -0.6467 2.7556 3.8186 48 1 -3.9200 2.4508 2.1129 49 1 -3.0348 0.9843 1.6292 50 1 -4.2811 0.8941 2.8968 51 1 -5.8635 2.7909 4.5966 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677184715.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:14 Heat of formation + Delta-G solvation = -56.880784 kcal Electronic energy + Delta-G solvation = -29898.759384 eV Core-core repulsion = 25991.098120 eV Total energy + Delta-G solvation = -3907.661264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.48050 -40.06134 -38.96607 -36.82420 -36.02085 -35.76422 -33.31421 -32.06636 -31.71297 -30.91646 -28.25467 -27.91079 -27.67816 -26.89202 -24.12670 -23.75192 -23.30447 -22.11893 -21.77412 -19.86270 -18.77218 -18.34954 -17.53091 -17.44618 -17.11556 -16.75005 -16.58343 -16.15547 -15.95836 -15.81023 -15.32280 -15.10364 -14.96706 -14.79790 -14.41675 -14.20383 -14.13621 -13.72075 -13.59818 -13.49220 -13.34677 -13.20973 -13.05911 -12.98539 -12.72247 -12.55629 -12.51990 -12.29665 -12.20677 -12.05631 -12.03166 -11.84847 -11.82019 -11.75676 -11.54002 -11.21039 -10.75240 -10.49435 -9.74565 -9.60905 -9.54978 -8.46397 -7.79994 -5.32179 0.48250 0.55659 1.49073 1.50704 1.56017 1.56897 2.05529 2.54616 2.92789 3.35392 3.38662 3.62105 3.79872 3.81971 3.93273 4.04596 4.10870 4.14226 4.20388 4.22980 4.30937 4.36353 4.48532 4.53940 4.57612 4.62202 4.65664 4.70366 4.72185 4.79365 4.84862 4.90992 4.91660 4.97731 5.03146 5.08891 5.20837 5.22140 5.25125 5.30419 5.42288 5.55592 5.63647 5.69150 5.71803 5.77400 5.77721 6.17987 6.35533 6.48034 7.06239 7.13930 7.25688 7.93439 8.42238 9.25282 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.003038 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.783815 B = 9215.361542 C =10851.144697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.093 4.093 3 H 0.117 0.883 4 C -0.054 4.054 5 C -0.087 4.087 6 C -0.127 4.127 7 C -0.128 4.128 8 C -0.131 4.131 9 C -0.124 4.124 10 C -0.125 4.125 11 C 0.511 3.489 12 O -0.584 6.584 13 N -0.603 5.603 14 C 0.093 3.907 15 C 0.079 3.921 16 C 0.072 3.928 17 H 0.078 0.922 18 O -0.563 6.563 19 C 0.121 3.879 20 N -0.610 5.610 21 C 0.177 3.823 22 C -0.246 4.246 23 H 0.073 0.927 24 C -0.052 4.052 25 N -0.941 5.941 26 Si 0.963 3.037 27 H -0.271 1.271 28 H -0.300 1.300 29 H -0.283 1.283 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.122 0.878 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.133 0.867 40 H 0.040 0.960 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.374 0.626 46 H 0.061 0.939 47 H 0.061 0.939 48 H -0.004 1.004 49 H 0.017 0.983 50 H 0.021 0.979 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.340 0.480 -14.071 22.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.114 4.114 3 H 0.134 0.866 4 C -0.092 4.092 5 C -0.087 4.087 6 C -0.145 4.145 7 C -0.146 4.146 8 C -0.149 4.149 9 C -0.142 4.142 10 C -0.143 4.143 11 C 0.301 3.699 12 O -0.465 6.465 13 N -0.333 5.333 14 C -0.049 4.049 15 C -0.045 4.045 16 C 0.009 3.991 17 H 0.096 0.904 18 O -0.369 6.369 19 C -0.006 4.006 20 N -0.332 5.332 21 C 0.032 3.968 22 C -0.377 4.377 23 H 0.091 0.909 24 C -0.247 4.247 25 N -0.587 5.587 26 Si 0.792 3.208 27 H -0.197 1.197 28 H -0.227 1.227 29 H -0.209 1.209 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.159 0.841 39 H 0.151 0.849 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.222 0.778 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.014 0.986 49 H 0.035 0.965 50 H 0.040 0.960 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 17.164 -0.503 -14.411 22.417 hybrid contribution -0.722 0.186 1.356 1.547 sum 16.442 -0.317 -13.056 20.997 Atomic orbital electron populations 1.22185 0.92608 1.02222 1.04327 1.21215 0.97722 1.01227 0.91205 0.86563 1.20288 1.01324 0.97713 0.89862 1.19843 0.95110 0.97277 0.96468 1.21243 0.96442 1.00489 0.96370 1.21414 1.00426 0.96396 0.96389 1.21463 0.94658 0.98105 1.00701 1.21435 0.97153 0.99875 0.95718 1.21271 1.00020 0.95948 0.97023 1.21124 0.77977 0.85288 0.85532 1.90647 1.46530 1.22194 1.87106 1.47815 1.52504 1.25606 1.07390 1.21613 0.97205 0.98870 0.87229 1.22593 0.91431 0.85267 1.05181 1.23274 0.93891 0.96291 0.85596 0.90418 1.86622 1.85240 1.46268 1.18721 1.21566 0.85026 0.94461 0.99567 1.43847 1.05390 1.81385 1.02617 1.20509 0.90897 0.96133 0.89243 1.19430 0.98566 1.35137 0.84567 0.90902 1.26052 0.98142 0.99554 1.00967 1.70184 1.04562 1.50835 1.33156 0.85409 0.76378 0.77844 0.81155 1.19709 1.22655 1.20932 0.90815 0.89867 0.93762 0.90673 0.91694 0.86031 0.84810 0.84350 0.84114 0.84887 0.94117 0.92131 0.88520 0.87304 0.87441 0.77847 0.92035 0.92105 0.98575 0.96490 0.96000 0.94532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 8.01 71.98 0.58 -2.96 16 2 C -0.09 -1.96 1.87 -11.54 -0.02 -1.98 16 3 H 0.12 1.95 7.08 -2.39 -0.02 1.93 16 4 C -0.05 -1.14 4.14 29.85 0.12 -1.02 16 5 C -0.09 -1.66 4.72 -19.87 -0.09 -1.75 16 6 C -0.13 -2.43 7.84 22.27 0.17 -2.26 16 7 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 8 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 9 C -0.12 -1.85 10.05 22.27 0.22 -1.62 16 10 C -0.12 -2.07 9.70 22.27 0.22 -1.86 16 11 C 0.51 13.81 6.93 87.66 0.61 14.42 16 12 O -0.58 -20.05 15.78 -3.02 -0.05 -20.10 16 13 N -0.60 -14.36 2.86 -846.75 -2.42 -16.78 16 14 C 0.09 2.11 9.55 127.77 1.22 3.33 16 15 C 0.08 1.59 4.62 86.38 0.40 1.99 16 16 C 0.07 2.10 2.60 30.59 0.08 2.18 16 17 H 0.08 2.62 5.72 -2.39 -0.01 2.61 16 18 O -0.56 -18.64 11.32 -148.98 -1.69 -20.32 16 19 C 0.12 4.12 5.40 86.38 0.47 4.59 16 20 N -0.61 -28.79 2.86 -726.94 -2.08 -30.87 16 21 C 0.18 8.65 8.98 127.77 1.15 9.80 16 22 C -0.25 -12.92 9.07 84.03 0.76 -12.15 16 23 H 0.07 3.66 7.24 -2.91 -0.02 3.64 16 24 C -0.05 -2.89 5.33 84.86 0.45 -2.44 16 25 N -0.94 -55.26 10.67 21.65 0.23 -55.03 16 26 Si 0.96 44.49 29.56 68.60 2.03 46.52 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 28 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 29 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 30 H 0.07 1.74 3.75 -2.39 -0.01 1.73 16 31 H 0.08 1.72 5.62 -2.39 -0.01 1.71 16 32 H 0.04 1.14 8.11 -2.38 -0.02 1.12 16 33 H 0.07 1.59 8.05 -2.39 -0.02 1.57 16 34 H 0.06 1.56 8.06 -2.39 -0.02 1.54 16 35 H 0.12 2.25 7.92 -2.91 -0.02 2.23 16 36 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.04 1.09 8.13 -2.39 -0.02 1.07 16 41 H 0.06 1.41 7.68 -2.39 -0.02 1.39 16 42 H 0.10 1.59 7.90 -2.39 -0.02 1.57 16 43 H 0.11 1.81 5.31 -2.39 -0.01 1.79 16 44 H 0.11 1.66 7.96 -2.39 -0.02 1.64 16 45 H 0.37 9.94 9.02 -74.06 -0.67 9.28 16 46 H 0.06 1.88 8.07 -2.39 -0.02 1.86 16 47 H 0.06 1.97 8.04 -2.38 -0.02 1.95 16 48 H 0.00 -0.21 7.79 -2.39 -0.02 -0.23 16 49 H 0.02 0.70 8.11 -2.38 -0.02 0.69 16 50 H 0.02 1.18 6.96 -2.39 -0.02 1.17 16 51 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -71.83 400.32 3.06 -68.77 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.25 Total: 23.28 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 6.78 Total: 4.54 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -4.27 Total: -102.68 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -1.73 Total: -40.42 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -71.83 3.06 -68.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677184715.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.887 kcal (2) G-P(sol) polarization free energy of solvation -71.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds