Wall clock time and date at job start Tue Mar 31 2020 18:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.44701 * 2 1 4 4 C 1.53043 * 109.46223 * 240.03543 * 2 1 3 5 5 C 1.53626 * 109.24219 * 178.48781 * 4 2 1 6 6 N 1.46929 * 108.54064 * 54.85783 * 5 4 2 7 7 C 1.34777 * 120.62800 * 126.36979 * 6 5 4 8 8 O 1.21280 * 119.99709 * 173.97081 * 7 6 5 9 9 C 1.50700 * 120.00471 * 353.96712 * 7 6 5 10 10 H 1.09009 * 110.65879 * 56.78351 * 9 7 6 11 11 C 1.56777 * 110.86216 * 293.61613 * 9 7 6 12 12 C 1.55821 * 101.97198 * 241.84415 * 11 9 7 13 13 H 1.08995 * 115.39441 * 158.39256 * 12 11 9 14 14 O 1.46531 * 101.92028 * 32.19469 * 12 11 9 15 15 C 1.46533 * 99.68660 * 305.65517 * 14 12 11 16 16 H 1.08998 * 115.68631 * 179.65088 * 15 14 12 17 17 C 1.55814 * 101.24325 * 305.83959 * 15 14 12 18 18 H 1.09003 * 118.71809 * 172.20632 * 17 15 14 19 19 C 1.53000 * 117.24176 * 330.28142 * 17 15 14 20 20 C 1.53001 * 60.86779 * 89.21350 * 19 17 15 21 21 H 1.09000 * 120.22033 * 114.58446 * 20 19 17 22 22 C 1.46919 * 118.73926 * 306.09058 * 6 5 4 23 23 H 1.09004 * 109.58714 * 293.93653 * 22 6 5 24 24 C 1.52997 * 109.59004 * 173.64918 * 22 6 5 25 25 N 1.46502 * 109.47429 * 181.26137 * 24 22 6 26 26 C 1.36938 * 119.99974 * 184.96017 * 25 24 22 27 27 H 1.07996 * 120.00207 * 0.02562 * 26 25 24 28 28 C 1.38811 * 119.99727 * 179.97438 * 26 25 24 29 29 N 1.31620 * 120.00086 * 0.02562 * 28 26 25 30 30 Si 1.86803 * 119.99597 * 180.02562 * 28 26 25 31 31 H 1.48503 * 109.47089 * 60.00627 * 30 28 26 32 32 H 1.48503 * 109.46920 * 180.02562 * 30 28 26 33 33 H 1.48493 * 109.47342 * 300.00112 * 30 28 26 34 34 C 1.53040 * 109.46041 * 119.96729 * 2 1 3 35 35 H 1.08995 * 109.47438 * 300.03700 * 1 2 3 36 36 H 1.09004 * 109.47229 * 60.03415 * 1 2 3 37 37 H 1.09004 * 109.46969 * 180.02562 * 1 2 3 38 38 H 1.09000 * 109.49735 * 298.56502 * 4 2 1 39 39 H 1.09004 * 109.49821 * 58.66000 * 4 2 1 40 40 H 1.08991 * 109.74057 * 295.12036 * 5 4 2 41 41 H 1.09001 * 109.66085 * 174.54907 * 5 4 2 42 42 H 1.08992 * 111.52447 * 123.61905 * 11 9 7 43 43 H 1.09001 * 110.74417 * 359.71439 * 11 9 7 44 44 H 1.08998 * 117.41198 * 341.47505 * 19 17 15 45 45 H 1.09006 * 117.41135 * 196.95548 * 19 17 15 46 46 H 1.09002 * 109.47119 * 301.26782 * 24 22 6 47 47 H 1.09005 * 109.46843 * 61.26104 * 24 22 6 48 48 H 0.96995 * 119.99907 * 4.96446 * 25 24 22 49 49 H 0.97005 * 119.99694 * 179.97438 * 29 28 26 50 50 H 1.08997 * 109.50176 * 61.43625 * 34 2 1 51 51 H 1.09003 * 109.49440 * 301.33630 * 34 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 3.5757 -0.6847 -1.2643 6 7 4.0679 -1.2487 0.0000 7 6 4.9622 -2.2571 0.0000 8 8 5.4434 -2.6408 1.0450 9 6 5.3642 -2.9078 -1.2985 10 1 5.7599 -2.1670 -1.9935 11 6 4.1547 -3.6743 -1.9368 12 6 4.6752 -5.1429 -1.9534 13 1 3.9043 -5.9115 -2.0073 14 8 5.5235 -5.1768 -0.7591 15 6 6.4034 -4.0416 -1.0493 16 1 7.1595 -3.8249 -0.2947 17 6 6.9399 -4.4262 -2.4607 18 1 7.5361 -3.6980 -3.0107 19 6 7.0547 -5.9172 -2.7840 20 6 5.7439 -5.1883 -3.0864 21 1 5.4081 -5.0680 -4.1164 22 6 3.5714 -0.6885 1.2642 23 1 3.9164 0.3402 1.3685 24 6 4.0912 -1.5250 2.4351 25 7 3.5702 -0.9822 3.6922 26 6 3.9829 -1.5072 4.8878 27 1 4.6927 -2.3210 4.9040 28 6 3.4897 -0.9925 6.0789 29 7 2.6250 -0.0004 6.0592 30 14 4.0532 -1.7082 7.7098 31 1 5.5250 -1.5555 7.8352 32 1 3.3838 -0.9892 8.8235 33 1 3.6983 -3.1489 7.7672 34 6 2.0398 -0.7208 1.2501 35 1 -0.3634 0.5144 0.8896 36 1 -0.3634 0.5133 -0.8903 37 1 -0.3633 -1.0277 0.0005 38 1 1.6979 -1.7556 -1.2384 39 1 1.6572 -0.2207 -2.1399 40 1 3.9188 0.3450 -1.3631 41 1 3.9487 -1.2782 -2.0990 42 1 3.9497 -3.3258 -2.9490 43 1 3.2675 -3.5862 -1.3098 44 1 7.0597 -6.6136 -1.9455 45 1 7.6787 -6.2003 -3.6318 46 1 3.7597 -2.5570 2.3198 47 1 5.1806 -1.4928 2.4492 48 1 2.9330 -0.2511 3.6777 49 1 2.2801 0.3590 6.8916 50 1 1.6979 -1.7556 1.2383 51 1 1.6572 -0.2207 2.1398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689094385.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:48 Heat of formation + Delta-G solvation = -2.959161 kcal Electronic energy + Delta-G solvation = -30938.746735 eV Core-core repulsion = 27033.423688 eV Total energy + Delta-G solvation = -3905.323047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.80558 -40.04089 -37.47151 -34.89591 -34.39098 -33.89981 -32.49943 -31.43308 -29.70201 -29.64329 -28.11065 -25.53180 -24.65606 -23.49391 -23.27381 -22.30583 -21.10968 -20.50029 -20.27905 -20.08828 -18.64916 -17.32005 -17.00468 -16.79774 -16.27250 -15.50284 -15.20811 -14.70012 -14.45672 -14.44505 -14.05287 -14.00804 -13.60387 -13.51554 -13.11743 -12.98053 -12.82568 -12.69950 -12.55671 -12.27729 -11.95530 -11.84990 -11.76027 -11.67649 -11.46076 -11.37986 -11.33368 -10.95188 -10.86737 -10.73253 -10.63337 -10.45227 -10.36060 -10.19348 -10.11257 -9.92866 -9.92448 -9.56825 -8.82802 -8.59541 -8.29485 -6.70662 -5.61476 -2.87332 2.81379 3.01136 3.31345 3.55810 3.57553 3.58487 3.61700 4.25544 4.29460 4.33867 4.51201 4.55916 4.65603 4.71509 4.76100 4.81682 4.87525 4.91809 4.94566 5.08141 5.19543 5.25158 5.28447 5.32174 5.42604 5.50650 5.54214 5.59219 5.62627 5.63940 5.73053 5.74694 5.77404 5.80133 5.87540 5.90664 5.94528 5.97965 6.08939 6.20675 6.29451 6.33428 6.35877 6.36489 6.62109 6.82027 7.17517 7.36673 7.64765 7.89570 8.46083 8.61123 9.69320 10.28803 10.63883 11.62209 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011200 B = 0.003808 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.370222 B = 7350.918485 C = 9313.253336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.069 0.931 4 C -0.128 4.128 5 C 0.107 3.893 6 N -0.607 5.607 7 C 0.518 3.482 8 O -0.506 6.506 9 C -0.135 4.135 10 H 0.104 0.896 11 C -0.128 4.128 12 C 0.086 3.914 13 H 0.130 0.870 14 O -0.357 6.357 15 C 0.118 3.882 16 H 0.140 0.860 17 C -0.194 4.194 18 H 0.122 0.878 19 C -0.135 4.135 20 C -0.198 4.198 21 H 0.121 0.879 22 C 0.140 3.860 23 H 0.069 0.931 24 C 0.160 3.840 25 N -0.737 5.737 26 C -0.223 4.223 27 H 0.069 0.931 28 C -0.019 4.019 29 N -0.940 5.940 30 Si 0.906 3.094 31 H -0.287 1.287 32 H -0.292 1.292 33 H -0.287 1.287 34 C -0.120 4.120 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.023 0.977 47 H 0.057 0.943 48 H 0.378 0.622 49 H 0.253 0.747 50 H 0.064 0.936 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.807 -4.352 -26.873 27.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.088 0.912 4 C -0.166 4.166 5 C -0.016 4.016 6 N -0.341 5.341 7 C 0.305 3.695 8 O -0.380 6.380 9 C -0.157 4.157 10 H 0.122 0.878 11 C -0.166 4.166 12 C 0.028 3.972 13 H 0.148 0.852 14 O -0.275 6.275 15 C 0.060 3.940 16 H 0.157 0.843 17 C -0.213 4.213 18 H 0.140 0.860 19 C -0.172 4.172 20 C -0.216 4.216 21 H 0.139 0.861 22 C 0.038 3.962 23 H 0.087 0.913 24 C 0.034 3.966 25 N -0.383 5.383 26 C -0.355 4.355 27 H 0.087 0.913 28 C -0.214 4.214 29 N -0.590 5.590 30 Si 0.737 3.263 31 H -0.214 1.214 32 H -0.218 1.218 33 H -0.214 1.214 34 C -0.158 4.158 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.041 0.959 47 H 0.075 0.925 48 H 0.212 0.788 49 H 0.062 0.938 50 H 0.083 0.917 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.149 -4.819 -25.972 26.503 hybrid contribution -0.086 0.228 0.524 0.578 sum 2.063 -4.591 -25.448 25.941 Atomic orbital electron populations 1.21802 0.95137 1.01731 1.01551 1.21153 0.95699 0.99522 0.94845 0.91209 1.22061 0.94775 1.01431 0.98347 1.21829 0.94646 0.99055 0.86111 1.48126 1.43588 1.35368 1.07052 1.20237 0.79275 0.79604 0.90417 1.90839 1.53192 1.62117 1.31870 1.23266 0.97520 0.98520 0.96369 0.87831 1.23455 0.97445 0.94513 1.01213 1.24207 0.92633 0.96844 0.83518 0.85211 1.90212 1.47425 1.49805 1.40095 1.23983 0.91661 0.84283 0.94040 0.84272 1.24319 1.02690 0.96321 0.97936 0.85987 1.22809 0.97518 0.93770 1.03101 1.24303 0.90424 1.07408 0.99511 0.86062 1.21579 0.93541 0.97890 0.83212 0.91257 1.21288 0.98017 0.93897 0.83416 1.42568 1.53234 1.41979 1.00563 1.19213 1.19641 1.12646 0.84002 0.91253 1.24685 1.00185 0.99069 0.97490 1.69649 1.35001 1.28473 1.25902 0.86269 0.77966 0.78243 0.83796 1.21383 1.21847 1.21405 1.21997 0.94765 1.01271 0.97764 0.92262 0.93127 0.92844 0.91525 0.91162 0.91493 0.90023 0.89607 0.89877 0.88126 0.88097 0.95931 0.92530 0.78816 0.93753 0.91746 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.19 37.16 0.34 -1.23 16 2 C -0.09 -1.10 2.68 -90.58 -0.24 -1.35 16 3 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 4 C -0.13 -1.20 5.38 -26.38 -0.14 -1.34 16 5 C 0.11 1.04 6.05 -3.48 -0.02 1.01 16 6 N -0.61 -8.59 2.97 -164.96 -0.49 -9.08 16 7 C 0.52 7.99 6.75 -10.99 -0.07 7.92 16 8 O -0.51 -10.28 11.47 5.56 0.06 -10.21 16 9 C -0.13 -1.47 1.87 -88.23 -0.17 -1.64 16 10 H 0.10 0.87 7.45 -51.92 -0.39 0.49 16 11 C -0.13 -1.16 4.85 -23.19 -0.11 -1.28 16 12 C 0.09 0.85 5.62 -23.72 -0.13 0.71 16 13 H 0.13 1.10 8.14 -51.93 -0.42 0.67 16 14 O -0.36 -5.06 10.78 -35.23 -0.38 -5.44 16 15 C 0.12 1.42 4.55 -23.73 -0.11 1.31 16 16 H 0.14 1.85 7.78 -51.93 -0.40 1.44 16 17 C -0.19 -1.70 6.63 -88.06 -0.58 -2.29 16 18 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 19 C -0.14 -1.13 9.80 -26.73 -0.26 -1.39 16 20 C -0.20 -1.58 6.62 -88.06 -0.58 -2.16 16 21 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 22 C 0.14 2.48 3.09 -67.60 -0.21 2.27 16 23 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 24 C 0.16 3.72 4.14 -4.04 -0.02 3.70 16 25 N -0.74 -20.07 5.38 -59.91 -0.32 -20.39 16 26 C -0.22 -6.76 9.99 -15.06 -0.15 -6.91 16 27 H 0.07 2.10 7.83 -52.49 -0.41 1.69 16 28 C -0.02 -0.59 5.50 -17.43 -0.10 -0.69 16 29 N -0.94 -29.48 13.06 55.49 0.72 -28.76 16 30 Si 0.91 23.78 29.55 -169.99 -5.02 18.75 16 31 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 32 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 33 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 34 C -0.12 -1.92 4.38 -26.61 -0.12 -2.04 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.60 4.98 -51.93 -0.26 0.34 16 42 H 0.09 0.53 7.86 -51.93 -0.41 0.13 16 43 H 0.08 0.88 7.79 -51.93 -0.40 0.48 16 44 H 0.10 1.00 7.65 -51.93 -0.40 0.60 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.02 0.58 7.29 -51.93 -0.38 0.20 16 47 H 0.06 1.44 6.18 -51.93 -0.32 1.12 16 48 H 0.38 10.44 6.39 -40.82 -0.26 10.18 16 49 H 0.25 7.67 8.31 -40.82 -0.34 7.34 16 50 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 51 H 0.09 1.58 6.92 -51.93 -0.36 1.22 16 LS Contribution 383.93 15.07 5.79 5.79 Total: -1.00 -35.36 383.93 -10.94 -46.30 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -8.62 Total: 8.42 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -2.68 Total: -5.38 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.09 Total: -58.23 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.32 Total: -15.65 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.02 Total: 18.75 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.36 -10.94 -46.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689094385.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.336 kcal (2) G-P(sol) polarization free energy of solvation -35.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds