Wall clock time and date at job start Tue Mar 31 2020 18:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.44701 * 2 1 4 4 C 1.53043 * 109.46223 * 240.03543 * 2 1 3 5 5 C 1.53626 * 109.24219 * 178.48781 * 4 2 1 6 6 N 1.46929 * 108.54064 * 54.85783 * 5 4 2 7 7 C 1.34777 * 120.62800 * 126.36979 * 6 5 4 8 8 O 1.21280 * 119.99709 * 173.97081 * 7 6 5 9 9 C 1.50700 * 120.00471 * 353.96712 * 7 6 5 10 10 H 1.09009 * 110.65879 * 56.78351 * 9 7 6 11 11 C 1.56777 * 110.86216 * 293.61613 * 9 7 6 12 12 C 1.55821 * 101.97198 * 241.84415 * 11 9 7 13 13 H 1.08995 * 115.39441 * 158.39256 * 12 11 9 14 14 O 1.46531 * 101.92028 * 32.19469 * 12 11 9 15 15 C 1.46533 * 99.68660 * 305.65517 * 14 12 11 16 16 H 1.08998 * 115.68631 * 179.65088 * 15 14 12 17 17 C 1.55814 * 101.24325 * 305.83959 * 15 14 12 18 18 H 1.09003 * 118.71809 * 172.20632 * 17 15 14 19 19 C 1.53000 * 117.24176 * 330.28142 * 17 15 14 20 20 C 1.53001 * 60.86779 * 89.21350 * 19 17 15 21 21 H 1.09000 * 120.22033 * 114.58446 * 20 19 17 22 22 C 1.46919 * 118.73926 * 306.09058 * 6 5 4 23 23 H 1.09004 * 109.58714 * 293.93653 * 22 6 5 24 24 C 1.52997 * 109.59004 * 173.64918 * 22 6 5 25 25 N 1.46502 * 109.47429 * 181.26137 * 24 22 6 26 26 C 1.36938 * 119.99974 * 184.96017 * 25 24 22 27 27 H 1.07996 * 120.00207 * 0.02562 * 26 25 24 28 28 C 1.38811 * 119.99727 * 179.97438 * 26 25 24 29 29 N 1.31620 * 120.00086 * 0.02562 * 28 26 25 30 30 Si 1.86803 * 119.99597 * 180.02562 * 28 26 25 31 31 H 1.48503 * 109.47089 * 60.00627 * 30 28 26 32 32 H 1.48503 * 109.46920 * 180.02562 * 30 28 26 33 33 H 1.48493 * 109.47342 * 300.00112 * 30 28 26 34 34 C 1.53040 * 109.46041 * 119.96729 * 2 1 3 35 35 H 1.08995 * 109.47438 * 300.03700 * 1 2 3 36 36 H 1.09004 * 109.47229 * 60.03415 * 1 2 3 37 37 H 1.09004 * 109.46969 * 180.02562 * 1 2 3 38 38 H 1.09000 * 109.49735 * 298.56502 * 4 2 1 39 39 H 1.09004 * 109.49821 * 58.66000 * 4 2 1 40 40 H 1.08991 * 109.74057 * 295.12036 * 5 4 2 41 41 H 1.09001 * 109.66085 * 174.54907 * 5 4 2 42 42 H 1.08992 * 111.52447 * 123.61905 * 11 9 7 43 43 H 1.09001 * 110.74417 * 359.71439 * 11 9 7 44 44 H 1.08998 * 117.41198 * 341.47505 * 19 17 15 45 45 H 1.09006 * 117.41135 * 196.95548 * 19 17 15 46 46 H 1.09002 * 109.47119 * 301.26782 * 24 22 6 47 47 H 1.09005 * 109.46843 * 61.26104 * 24 22 6 48 48 H 0.96995 * 119.99907 * 4.96446 * 25 24 22 49 49 H 0.97005 * 119.99694 * 179.97438 * 29 28 26 50 50 H 1.08997 * 109.50176 * 61.43625 * 34 2 1 51 51 H 1.09003 * 109.49440 * 301.33630 * 34 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 3.5757 -0.6847 -1.2643 6 7 4.0679 -1.2487 0.0000 7 6 4.9622 -2.2571 0.0000 8 8 5.4434 -2.6408 1.0450 9 6 5.3642 -2.9078 -1.2985 10 1 5.7599 -2.1670 -1.9935 11 6 4.1547 -3.6743 -1.9368 12 6 4.6752 -5.1429 -1.9534 13 1 3.9043 -5.9115 -2.0073 14 8 5.5235 -5.1768 -0.7591 15 6 6.4034 -4.0416 -1.0493 16 1 7.1595 -3.8249 -0.2947 17 6 6.9399 -4.4262 -2.4607 18 1 7.5361 -3.6980 -3.0107 19 6 7.0547 -5.9172 -2.7840 20 6 5.7439 -5.1883 -3.0864 21 1 5.4081 -5.0680 -4.1164 22 6 3.5714 -0.6885 1.2642 23 1 3.9164 0.3402 1.3685 24 6 4.0912 -1.5250 2.4351 25 7 3.5702 -0.9822 3.6922 26 6 3.9829 -1.5072 4.8878 27 1 4.6927 -2.3210 4.9040 28 6 3.4897 -0.9925 6.0789 29 7 2.6250 -0.0004 6.0592 30 14 4.0532 -1.7082 7.7098 31 1 5.5250 -1.5555 7.8352 32 1 3.3838 -0.9892 8.8235 33 1 3.6983 -3.1489 7.7672 34 6 2.0398 -0.7208 1.2501 35 1 -0.3634 0.5144 0.8896 36 1 -0.3634 0.5133 -0.8903 37 1 -0.3633 -1.0277 0.0005 38 1 1.6979 -1.7556 -1.2384 39 1 1.6572 -0.2207 -2.1399 40 1 3.9188 0.3450 -1.3631 41 1 3.9487 -1.2782 -2.0990 42 1 3.9497 -3.3258 -2.9490 43 1 3.2675 -3.5862 -1.3098 44 1 7.0597 -6.6136 -1.9455 45 1 7.6787 -6.2003 -3.6318 46 1 3.7597 -2.5570 2.3198 47 1 5.1806 -1.4928 2.4492 48 1 2.9330 -0.2511 3.6777 49 1 2.2801 0.3590 6.8916 50 1 1.6979 -1.7556 1.2383 51 1 1.6572 -0.2207 2.1398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689094385.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:47 Heat of formation + Delta-G solvation = -26.827622 kcal Electronic energy + Delta-G solvation = -30939.781749 eV Core-core repulsion = 27033.423688 eV Total energy + Delta-G solvation = -3906.358062 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.67109 -41.19336 -38.65781 -36.73208 -35.28582 -34.98953 -34.11227 -32.78069 -31.33930 -30.44248 -29.21205 -27.27365 -25.82668 -24.80935 -24.33730 -23.43932 -22.46477 -21.38875 -21.21585 -20.91333 -19.85753 -19.10211 -18.19922 -17.84502 -17.29077 -16.75042 -16.61038 -16.29082 -15.59829 -15.44275 -15.35227 -15.28233 -14.88585 -14.57039 -14.49141 -14.46852 -14.13523 -13.80634 -13.61553 -13.34885 -13.22748 -12.89454 -12.86689 -12.80757 -12.70952 -12.51107 -12.41399 -12.25832 -12.23445 -12.09661 -12.03905 -11.94449 -11.80177 -11.38288 -11.24167 -11.10538 -11.00733 -10.95527 -10.60105 -10.08768 -9.58239 -8.99095 -7.99365 -5.27583 1.40548 1.45163 1.51638 1.64420 1.91763 2.52938 2.64976 2.78584 3.32648 3.36490 3.51847 3.57305 3.69011 3.77210 3.80827 3.85688 3.92130 4.02580 4.08569 4.10810 4.17853 4.23729 4.25066 4.31985 4.42856 4.55074 4.60913 4.65616 4.69058 4.69969 4.80300 4.83549 4.88593 4.89839 4.90735 4.96171 4.99283 5.08530 5.11481 5.15976 5.19938 5.26160 5.28513 5.34369 5.40371 5.42512 5.54357 5.60002 5.69394 6.23613 6.50930 7.27350 7.29802 8.03755 8.32185 9.23961 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011200 B = 0.003808 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.370222 B = 7350.918485 C = 9313.253336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.076 0.924 4 C -0.121 4.121 5 C 0.100 3.900 6 N -0.602 5.602 7 C 0.506 3.494 8 O -0.571 6.571 9 C -0.122 4.122 10 H 0.143 0.857 11 C -0.118 4.118 12 C 0.071 3.929 13 H 0.138 0.862 14 O -0.406 6.406 15 C 0.101 3.899 16 H 0.107 0.893 17 C -0.190 4.190 18 H 0.149 0.851 19 C -0.145 4.145 20 C -0.174 4.174 21 H 0.158 0.842 22 C 0.150 3.850 23 H 0.067 0.933 24 C 0.175 3.825 25 N -0.744 5.744 26 C -0.248 4.248 27 H 0.058 0.942 28 C -0.070 4.070 29 N -0.966 5.966 30 Si 0.974 3.026 31 H -0.279 1.279 32 H -0.284 1.284 33 H -0.281 1.281 34 C -0.110 4.110 35 H 0.041 0.959 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.118 0.882 42 H 0.134 0.866 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.127 0.873 46 H -0.008 1.008 47 H 0.031 0.969 48 H 0.374 0.626 49 H 0.254 0.746 50 H 0.044 0.956 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.343 -3.718 -31.268 31.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.095 0.905 4 C -0.159 4.159 5 C -0.021 4.021 6 N -0.336 5.336 7 C 0.295 3.705 8 O -0.450 6.450 9 C -0.143 4.143 10 H 0.161 0.839 11 C -0.155 4.155 12 C 0.014 3.986 13 H 0.156 0.844 14 O -0.326 6.326 15 C 0.043 3.957 16 H 0.124 0.876 17 C -0.208 4.208 18 H 0.167 0.833 19 C -0.182 4.182 20 C -0.192 4.192 21 H 0.175 0.825 22 C 0.046 3.954 23 H 0.084 0.916 24 C 0.050 3.950 25 N -0.390 5.390 26 C -0.380 4.380 27 H 0.076 0.924 28 C -0.262 4.262 29 N -0.616 5.616 30 Si 0.802 3.198 31 H -0.206 1.206 32 H -0.210 1.210 33 H -0.208 1.208 34 C -0.148 4.148 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.129 0.871 40 H 0.102 0.898 41 H 0.136 0.864 42 H 0.152 0.848 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.145 0.855 46 H 0.010 0.990 47 H 0.049 0.951 48 H 0.207 0.793 49 H 0.063 0.937 50 H 0.063 0.937 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.673 -4.176 -30.433 30.764 hybrid contribution 0.065 -0.032 1.959 1.960 sum 1.737 -4.208 -28.474 28.836 Atomic orbital electron populations 1.21778 0.94209 1.01735 1.02204 1.21141 0.96442 0.99478 0.93650 0.90527 1.22059 0.94279 1.01398 0.98157 1.22275 0.95031 1.00432 0.84391 1.48224 1.43053 1.34961 1.07359 1.21233 0.78448 0.79205 0.91591 1.90812 1.55530 1.63948 1.34682 1.23262 0.98208 0.98716 0.94108 0.83916 1.23498 0.95417 0.93549 1.03050 1.24550 0.93186 0.97841 0.83022 0.84434 1.90177 1.48810 1.50811 1.42779 1.23997 0.91638 0.84535 0.95503 0.87562 1.24242 1.03941 0.97008 0.95645 0.83340 1.22898 0.98959 0.93156 1.03138 1.24363 0.88975 1.05781 1.00103 0.82457 1.21176 0.94595 0.96410 0.83202 0.91554 1.21081 0.96306 0.93206 0.84452 1.42710 1.53150 1.41760 1.01332 1.19459 1.19955 1.12897 0.85681 0.92389 1.25521 1.00292 0.99520 1.00875 1.69795 1.35701 1.29352 1.26792 0.85213 0.77756 0.77619 0.79187 1.20566 1.20959 1.20763 1.21854 0.93339 1.00359 0.99269 0.93973 0.90105 0.93186 0.91762 0.87074 0.89782 0.86442 0.84807 0.91731 0.90904 0.85538 0.98990 0.95100 0.79324 0.93730 0.93700 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.19 71.98 0.66 -2.17 16 2 C -0.09 -1.94 2.68 -10.77 -0.03 -1.97 16 3 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 4 C -0.12 -1.78 5.38 30.82 0.17 -1.61 16 5 C 0.10 1.54 6.05 86.51 0.52 2.07 16 6 N -0.60 -16.90 2.97 -794.20 -2.36 -19.26 16 7 C 0.51 16.08 6.75 87.66 0.59 16.67 16 8 O -0.57 -25.43 11.47 -3.03 -0.03 -25.46 16 9 C -0.12 -2.45 1.87 -9.24 -0.02 -2.46 16 10 H 0.14 1.74 7.45 -2.38 -0.02 1.73 16 11 C -0.12 -1.75 4.85 32.89 0.16 -1.59 16 12 C 0.07 1.28 5.62 32.54 0.18 1.46 16 13 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 14 O -0.41 -12.06 10.78 -148.98 -1.61 -13.67 16 15 C 0.10 2.48 4.55 32.54 0.15 2.62 16 16 H 0.11 3.17 7.78 -2.39 -0.02 3.16 16 17 C -0.19 -2.86 6.63 -9.14 -0.06 -2.92 16 18 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 19 C -0.14 -2.14 9.80 30.59 0.30 -1.84 16 20 C -0.17 -2.12 6.62 -9.13 -0.06 -2.18 16 21 H 0.16 0.87 8.14 -2.39 -0.02 0.85 16 22 C 0.15 5.58 3.09 44.98 0.14 5.72 16 23 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 24 C 0.18 8.88 4.14 86.38 0.36 9.24 16 25 N -0.74 -43.44 5.38 -343.45 -1.85 -45.29 16 26 C -0.25 -15.83 9.99 84.03 0.84 -14.99 16 27 H 0.06 3.74 7.83 -2.91 -0.02 3.72 16 28 C -0.07 -4.35 5.50 84.86 0.47 -3.89 16 29 N -0.97 -62.25 13.06 21.65 0.28 -61.97 16 30 Si 0.97 50.14 29.55 68.60 2.03 52.17 16 31 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 32 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 33 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 34 C -0.11 -3.69 4.38 30.67 0.13 -3.56 16 35 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.12 1.03 4.98 -2.39 -0.01 1.02 16 42 H 0.13 0.76 7.86 -2.39 -0.02 0.74 16 43 H 0.06 1.24 7.79 -2.39 -0.02 1.22 16 44 H 0.07 1.49 7.65 -2.39 -0.02 1.47 16 45 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 46 H -0.01 -0.44 7.29 -2.39 -0.02 -0.45 16 47 H 0.03 1.74 6.18 -2.38 -0.01 1.72 16 48 H 0.37 22.05 6.39 -92.71 -0.59 21.46 16 49 H 0.25 15.68 8.31 -92.70 -0.77 14.90 16 50 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.05 2.06 6.92 -2.39 -0.02 2.05 16 Total: -1.00 -86.26 383.93 1.30 -84.96 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.33 Total: 29.92 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 4.50 Total: -1.41 kcal Atomic # 7 Polarization: -122.59 SS G_CDS: -3.92 Total: -126.51 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -1.64 Total: -39.13 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.03 Total: 52.17 kcal Total: -86.26 1.30 -84.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689094385.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.135 kcal (2) G-P(sol) polarization free energy of solvation -86.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds