Wall clock time and date at job start Tue Mar 31 2020 19:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47663 * 2 1 4 4 C 1.50697 * 109.46984 * 120.00435 * 2 1 3 5 5 O 1.21277 * 120.00462 * 119.99989 * 4 2 1 6 6 N 1.34781 * 119.99612 * 299.99194 * 4 2 1 7 7 C 1.46490 * 120.00270 * 0.02562 * 6 4 2 8 8 C 1.46506 * 119.99785 * 180.02562 * 6 4 2 9 9 C 1.52999 * 109.47168 * 90.00420 * 8 6 4 10 10 O 1.42893 * 109.47076 * 64.99625 * 9 8 6 11 11 C 1.42901 * 113.99678 * 180.02562 * 10 9 8 12 12 C 1.53008 * 109.47079 * 180.02562 * 11 10 9 13 13 N 1.46497 * 109.47083 * 64.99969 * 12 11 10 14 14 C 1.46503 * 119.99917 * 270.00257 * 13 12 11 15 15 C 1.36943 * 120.00016 * 89.99896 * 13 12 11 16 16 H 1.07994 * 119.99666 * 22.67761 * 15 13 12 17 17 C 1.38812 * 119.99780 * 202.67717 * 15 13 12 18 18 N 1.31615 * 120.00601 * 11.50340 * 17 15 13 19 19 Si 1.86808 * 119.99599 * 191.50413 * 17 15 13 20 20 H 1.48503 * 109.46944 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46845 * 120.00073 * 19 17 15 22 22 H 1.48500 * 109.46658 * 239.99963 * 19 17 15 23 23 C 1.50705 * 109.46966 * 239.99605 * 2 1 3 24 24 C 1.38235 * 119.99555 * 120.00100 * 23 2 1 25 25 C 1.38242 * 119.99949 * 180.02562 * 24 23 2 26 26 C 1.38237 * 119.99757 * 359.95526 * 25 24 23 27 27 C 1.38238 * 120.00158 * 0.27842 * 26 25 24 28 28 C 1.38235 * 120.00249 * 300.02964 * 23 2 1 29 29 H 1.08997 * 109.47663 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47255 * 300.00166 * 1 2 3 31 31 H 1.08999 * 109.47191 * 59.99601 * 1 2 3 32 32 H 1.08999 * 109.47304 * 89.99707 * 7 6 4 33 33 H 1.09000 * 109.47508 * 210.00060 * 7 6 4 34 34 H 1.09003 * 109.47433 * 329.99726 * 7 6 4 35 35 H 1.08998 * 109.46749 * 210.00355 * 8 6 4 36 36 H 1.08997 * 109.47243 * 330.00211 * 8 6 4 37 37 H 1.09000 * 109.46796 * 184.99831 * 9 8 6 38 38 H 1.09000 * 109.46982 * 304.99868 * 9 8 6 39 39 H 1.09002 * 109.47325 * 299.99823 * 11 10 9 40 40 H 1.08994 * 109.47382 * 60.00094 * 11 10 9 41 41 H 1.08999 * 109.47043 * 184.99973 * 12 11 10 42 42 H 1.09001 * 109.46888 * 304.99838 * 12 11 10 43 43 H 1.08998 * 109.47237 * 93.93133 * 14 13 12 44 44 H 1.09008 * 109.46590 * 213.92864 * 14 13 12 45 45 H 1.08997 * 109.46832 * 333.92658 * 14 13 12 46 46 H 0.96997 * 120.00397 * 179.97438 * 18 17 15 47 47 H 1.07997 * 120.00682 * 0.02562 * 24 23 2 48 48 H 1.07995 * 119.99918 * 179.97438 * 25 24 23 49 49 H 1.07995 * 120.00172 * 180.02562 * 26 25 24 50 50 H 1.07991 * 120.00209 * 179.72055 * 27 26 25 51 51 H 1.08000 * 119.99973 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 8 2.7295 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4545 7 6 0.8642 0.9409 2.5890 8 6 2.1955 -0.9403 3.6507 9 6 3.5431 -0.3474 4.0669 10 8 3.3628 1.0136 4.4630 11 6 4.5674 1.6643 4.8723 12 6 4.2566 3.1079 5.2728 13 7 3.3930 3.1113 6.4561 14 6 1.9364 3.0997 6.3000 15 6 3.9473 3.1251 7.7083 16 1 4.9524 3.4939 7.8497 17 6 3.2173 2.6651 8.7956 18 7 2.0916 2.0109 8.6032 19 14 3.8326 2.9748 10.5321 20 1 5.1118 3.7270 10.4771 21 1 2.8244 3.7676 11.2804 22 1 4.0504 1.6763 11.2188 23 6 2.0323 -0.7105 -1.2305 24 6 2.8270 -0.0387 -2.1404 25 6 3.2874 -0.6902 -3.2694 26 6 2.9537 -2.0138 -3.4879 27 6 2.1550 -2.6842 -2.5804 28 6 1.6978 -2.0338 -1.4495 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.1837 0.6427 2.6225 33 1 1.1220 1.4665 3.5084 34 1 1.0274 1.5997 1.7360 35 1 1.4776 -0.8151 4.4613 36 1 2.3169 -2.0015 3.4337 37 1 3.9488 -0.9183 4.9022 38 1 4.2351 -0.3924 3.2259 39 1 4.9948 1.1353 5.7242 40 1 5.2803 1.6611 4.0478 41 1 5.1860 3.6301 5.4998 42 1 3.7483 3.6116 4.4506 43 1 1.5749 2.0722 6.3395 44 1 1.4802 3.6766 7.1046 45 1 1.6704 3.5418 5.3399 46 1 1.5816 1.6891 9.3630 47 1 3.0883 0.9951 -1.9694 48 1 3.9079 -0.1653 -3.9805 49 1 3.3137 -2.5230 -4.3696 50 1 1.8906 -3.7169 -2.7533 51 1 1.0769 -2.5586 -0.7386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692307667.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:58 Heat of formation + Delta-G solvation = -24.690413 kcal Electronic energy + Delta-G solvation = -29467.881614 eV Core-core repulsion = 25561.616228 eV Total energy + Delta-G solvation = -3906.265385 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.54921 -38.91243 -37.45418 -35.64473 -35.03890 -34.30754 -31.52468 -31.02721 -30.31576 -29.08579 -27.91686 -26.65800 -25.72330 -24.69229 -23.11241 -22.88169 -22.68179 -21.21268 -20.29907 -19.06179 -17.17430 -16.98815 -16.71672 -16.36994 -15.71539 -15.60328 -15.29263 -15.07696 -14.83574 -14.53616 -14.07267 -13.94765 -13.60379 -13.42505 -13.38286 -13.14679 -13.01439 -12.83498 -12.60554 -12.29704 -12.23706 -12.07323 -11.84942 -11.59938 -11.40816 -11.33496 -11.07976 -11.01353 -10.92711 -10.83220 -10.73001 -10.48704 -10.06740 -9.89072 -9.81043 -9.66469 -8.99813 -8.90328 -8.83495 -8.55339 -8.48606 -6.67009 -5.66647 -3.11939 1.21374 1.31726 2.65111 3.04999 3.38887 3.46226 3.47903 3.70072 4.29973 4.37436 4.48794 4.54208 4.75172 4.85171 4.93740 5.01119 5.02520 5.23467 5.34078 5.35725 5.38594 5.43454 5.45822 5.48654 5.55986 5.59859 5.66510 5.74230 5.81394 5.84689 5.85956 5.92915 5.99365 6.06195 6.15930 6.22090 6.28761 6.33107 6.39397 6.49356 6.58007 6.60070 6.79637 6.87721 6.91940 7.44411 7.49522 7.82407 7.89363 7.94885 8.20722 8.45822 9.30593 9.94164 10.44388 11.37803 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.025598 B = 0.002288 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.581610 B =12237.181365 C =12371.843557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.071 4.071 3 H 0.104 0.896 4 C 0.517 3.483 5 O -0.539 6.539 6 N -0.601 5.601 7 C 0.075 3.925 8 C 0.121 3.879 9 C 0.049 3.951 10 O -0.366 6.366 11 C 0.044 3.956 12 C 0.154 3.846 13 N -0.596 5.596 14 C 0.175 3.825 15 C -0.253 4.253 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.904 5.904 19 Si 0.901 3.099 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.291 1.291 23 C -0.064 4.064 24 C -0.113 4.113 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.123 4.123 28 C -0.083 4.083 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.040 0.960 39 H 0.046 0.954 40 H 0.021 0.979 41 H 0.057 0.943 42 H 0.042 0.958 43 H 0.031 0.969 44 H 0.037 0.963 45 H -0.008 1.008 46 H 0.250 0.750 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.118 0.882 50 H 0.119 0.881 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 -5.226 -22.178 23.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.092 4.092 3 H 0.122 0.878 4 C 0.304 3.696 5 O -0.416 6.416 6 N -0.334 5.334 7 C -0.067 4.067 8 C -0.001 4.001 9 C -0.029 4.029 10 O -0.285 6.285 11 C -0.035 4.035 12 C 0.026 3.974 13 N -0.319 5.319 14 C 0.031 3.969 15 C -0.383 4.383 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.549 5.549 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.219 1.219 23 C -0.064 4.064 24 C -0.131 4.131 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.141 4.141 28 C -0.102 4.102 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.011 0.989 46 H 0.060 0.940 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.136 0.864 50 H 0.137 0.863 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.440 -5.693 -22.080 23.060 hybrid contribution 0.710 -0.126 1.132 1.342 sum -2.730 -5.819 -20.948 21.912 Atomic orbital electron populations 1.22068 0.92029 1.03220 1.03719 1.20269 0.97852 1.00223 0.90854 0.87822 1.20464 0.80225 0.84580 0.84331 1.90696 1.37925 1.26558 1.86395 1.47726 1.50954 1.29297 1.05396 1.22050 0.93460 0.86829 1.04400 1.21543 0.95567 0.96439 0.86588 1.22750 0.96844 0.85426 0.97921 1.87914 1.32258 1.22733 1.85625 1.23447 0.85992 0.97852 0.96228 1.20880 0.95127 0.91404 0.90007 1.43890 1.01659 1.85663 1.00699 1.20684 0.82736 0.99273 0.94217 1.19246 0.99955 1.35216 0.83916 0.91574 1.25016 0.98004 0.98492 0.98182 1.70089 1.16173 1.39785 1.28860 0.86234 0.78064 0.77375 0.85166 1.20429 1.21698 1.21858 1.19340 0.97978 0.94425 0.94654 1.21022 0.97623 0.99894 0.94540 1.21064 1.00423 0.95024 0.97703 1.21119 0.98628 0.94882 0.99436 1.21106 0.98529 0.99786 0.94726 1.20898 0.99061 0.93812 0.96383 0.92039 0.90280 0.91373 0.92571 0.88926 0.91374 0.89223 0.89079 0.93004 0.94200 0.93527 0.96040 0.92516 0.93926 0.95024 0.94449 0.98915 0.94002 0.86174 0.86202 0.86364 0.86269 0.86426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.64 37.16 0.32 -0.94 16 2 C -0.07 -0.74 2.10 -92.92 -0.20 -0.94 16 3 H 0.10 0.97 7.14 -51.93 -0.37 0.60 16 4 C 0.52 7.05 6.95 -10.98 -0.08 6.97 16 5 O -0.54 -9.11 14.69 5.56 0.08 -9.02 16 6 N -0.60 -7.95 2.84 -181.58 -0.52 -8.47 16 7 C 0.08 0.84 8.62 59.84 0.52 1.36 16 8 C 0.12 1.76 5.81 -4.04 -0.02 1.73 16 9 C 0.05 0.81 6.28 37.16 0.23 1.04 16 10 O -0.37 -7.01 8.72 -35.23 -0.31 -7.32 16 11 C 0.04 0.86 6.28 37.16 0.23 1.09 16 12 C 0.15 3.17 6.12 -4.04 -0.02 3.15 16 13 N -0.60 -15.01 2.89 -181.11 -0.52 -15.53 16 14 C 0.18 4.32 8.61 59.85 0.52 4.84 16 15 C -0.25 -6.96 9.67 -15.06 -0.15 -7.11 16 16 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 17 C 0.00 0.04 5.12 -17.43 -0.09 -0.05 16 18 N -0.90 -26.27 10.62 55.49 0.59 -25.68 16 19 Si 0.90 21.89 29.57 -169.99 -5.03 16.86 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 C -0.06 -0.72 4.40 -104.62 -0.46 -1.18 16 24 C -0.11 -1.17 9.67 -39.58 -0.38 -1.55 16 25 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 26 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 27 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 28 C -0.08 -0.96 7.93 -39.58 -0.31 -1.27 16 29 H 0.06 0.53 7.39 -51.93 -0.38 0.14 16 30 H 0.08 0.59 4.53 -51.93 -0.24 0.35 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.52 6.95 -51.93 -0.36 0.16 16 33 H 0.09 1.28 7.11 -51.93 -0.37 0.91 16 34 H 0.07 0.63 6.01 -51.93 -0.31 0.32 16 35 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 36 H 0.09 1.29 7.42 -51.93 -0.39 0.90 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 42 H 0.04 0.81 7.87 -51.93 -0.41 0.40 16 43 H 0.03 0.84 7.43 -51.93 -0.39 0.46 16 44 H 0.04 0.99 7.20 -51.92 -0.37 0.62 16 45 H -0.01 -0.17 7.85 -51.93 -0.41 -0.57 16 46 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.12 1.03 7.95 -52.49 -0.42 0.62 16 48 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 49 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 50 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 51 H 0.12 1.34 7.52 -52.49 -0.39 0.95 16 LS Contribution 406.47 15.07 6.13 6.13 Total: -1.00 -32.86 406.47 -9.23 -42.09 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -8.57 Total: -1.42 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -1.09 Total: 2.36 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: -0.45 Total: -49.68 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.23 Total: -16.34 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.86 -9.23 -42.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692307667.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.403 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds