Wall clock time and date at job start Tue Mar 31 2020 19:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47663 * 2 1 4 4 C 1.50697 * 109.46984 * 120.00435 * 2 1 3 5 5 O 1.21277 * 120.00462 * 119.99989 * 4 2 1 6 6 N 1.34781 * 119.99612 * 299.99194 * 4 2 1 7 7 C 1.46490 * 120.00270 * 0.02562 * 6 4 2 8 8 C 1.46506 * 119.99785 * 180.02562 * 6 4 2 9 9 C 1.52999 * 109.47168 * 90.00420 * 8 6 4 10 10 O 1.42893 * 109.47076 * 64.99625 * 9 8 6 11 11 C 1.42901 * 113.99678 * 180.02562 * 10 9 8 12 12 C 1.53008 * 109.47079 * 180.02562 * 11 10 9 13 13 N 1.46497 * 109.47083 * 64.99969 * 12 11 10 14 14 C 1.46503 * 119.99917 * 270.00257 * 13 12 11 15 15 C 1.36943 * 120.00016 * 89.99896 * 13 12 11 16 16 H 1.07994 * 119.99666 * 22.67761 * 15 13 12 17 17 C 1.38812 * 119.99780 * 202.67717 * 15 13 12 18 18 N 1.31615 * 120.00601 * 11.50340 * 17 15 13 19 19 Si 1.86808 * 119.99599 * 191.50413 * 17 15 13 20 20 H 1.48503 * 109.46944 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46845 * 120.00073 * 19 17 15 22 22 H 1.48500 * 109.46658 * 239.99963 * 19 17 15 23 23 C 1.50705 * 109.46966 * 239.99605 * 2 1 3 24 24 C 1.38235 * 119.99555 * 120.00100 * 23 2 1 25 25 C 1.38242 * 119.99949 * 180.02562 * 24 23 2 26 26 C 1.38237 * 119.99757 * 359.95526 * 25 24 23 27 27 C 1.38238 * 120.00158 * 0.27842 * 26 25 24 28 28 C 1.38235 * 120.00249 * 300.02964 * 23 2 1 29 29 H 1.08997 * 109.47663 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47255 * 300.00166 * 1 2 3 31 31 H 1.08999 * 109.47191 * 59.99601 * 1 2 3 32 32 H 1.08999 * 109.47304 * 89.99707 * 7 6 4 33 33 H 1.09000 * 109.47508 * 210.00060 * 7 6 4 34 34 H 1.09003 * 109.47433 * 329.99726 * 7 6 4 35 35 H 1.08998 * 109.46749 * 210.00355 * 8 6 4 36 36 H 1.08997 * 109.47243 * 330.00211 * 8 6 4 37 37 H 1.09000 * 109.46796 * 184.99831 * 9 8 6 38 38 H 1.09000 * 109.46982 * 304.99868 * 9 8 6 39 39 H 1.09002 * 109.47325 * 299.99823 * 11 10 9 40 40 H 1.08994 * 109.47382 * 60.00094 * 11 10 9 41 41 H 1.08999 * 109.47043 * 184.99973 * 12 11 10 42 42 H 1.09001 * 109.46888 * 304.99838 * 12 11 10 43 43 H 1.08998 * 109.47237 * 93.93133 * 14 13 12 44 44 H 1.09008 * 109.46590 * 213.92864 * 14 13 12 45 45 H 1.08997 * 109.46832 * 333.92658 * 14 13 12 46 46 H 0.96997 * 120.00397 * 179.97438 * 18 17 15 47 47 H 1.07997 * 120.00682 * 0.02562 * 24 23 2 48 48 H 1.07995 * 119.99918 * 179.97438 * 25 24 23 49 49 H 1.07995 * 120.00172 * 180.02562 * 26 25 24 50 50 H 1.07991 * 120.00209 * 179.72055 * 27 26 25 51 51 H 1.08000 * 119.99973 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 8 2.7295 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4545 7 6 0.8642 0.9409 2.5890 8 6 2.1955 -0.9403 3.6507 9 6 3.5431 -0.3474 4.0669 10 8 3.3628 1.0136 4.4630 11 6 4.5674 1.6643 4.8723 12 6 4.2566 3.1079 5.2728 13 7 3.3930 3.1113 6.4561 14 6 1.9364 3.0997 6.3000 15 6 3.9473 3.1251 7.7083 16 1 4.9524 3.4939 7.8497 17 6 3.2173 2.6651 8.7956 18 7 2.0916 2.0109 8.6032 19 14 3.8326 2.9748 10.5321 20 1 5.1118 3.7270 10.4771 21 1 2.8244 3.7676 11.2804 22 1 4.0504 1.6763 11.2188 23 6 2.0323 -0.7105 -1.2305 24 6 2.8270 -0.0387 -2.1404 25 6 3.2874 -0.6902 -3.2694 26 6 2.9537 -2.0138 -3.4879 27 6 2.1550 -2.6842 -2.5804 28 6 1.6978 -2.0338 -1.4495 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.1837 0.6427 2.6225 33 1 1.1220 1.4665 3.5084 34 1 1.0274 1.5997 1.7360 35 1 1.4776 -0.8151 4.4613 36 1 2.3169 -2.0015 3.4337 37 1 3.9488 -0.9183 4.9022 38 1 4.2351 -0.3924 3.2259 39 1 4.9948 1.1353 5.7242 40 1 5.2803 1.6611 4.0478 41 1 5.1860 3.6301 5.4998 42 1 3.7483 3.6116 4.4506 43 1 1.5749 2.0722 6.3395 44 1 1.4802 3.6766 7.1046 45 1 1.6704 3.5418 5.3399 46 1 1.5816 1.6891 9.3630 47 1 3.0883 0.9951 -1.9694 48 1 3.9079 -0.1653 -3.9805 49 1 3.3137 -2.5230 -4.3696 50 1 1.8906 -3.7169 -2.7533 51 1 1.0769 -2.5586 -0.7386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692307667.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:57 Heat of formation + Delta-G solvation = -42.499411 kcal Electronic energy + Delta-G solvation = -29468.653870 eV Core-core repulsion = 25561.616228 eV Total energy + Delta-G solvation = -3907.037641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.51534 -39.79137 -38.92244 -37.21879 -36.42987 -35.19845 -33.42983 -31.76597 -31.53081 -30.15577 -29.39296 -27.78355 -27.64863 -25.57868 -24.79582 -24.09853 -23.43414 -22.21290 -22.03042 -20.05176 -18.76530 -18.11456 -17.84288 -17.50804 -17.14856 -16.89724 -16.54936 -16.38782 -15.96493 -15.69220 -15.30731 -15.18210 -15.14336 -14.69558 -14.47141 -14.15997 -14.09831 -13.96319 -13.68724 -13.51671 -13.40237 -13.09302 -13.02878 -12.97347 -12.72296 -12.66108 -12.57626 -12.44016 -12.36724 -12.21790 -11.97049 -11.82891 -11.77307 -11.73470 -11.68993 -10.74520 -10.60593 -10.38850 -9.75932 -9.65421 -9.58779 -8.70734 -7.76969 -5.24035 0.45528 0.55932 1.46351 1.47967 1.57574 1.61161 2.03383 2.53282 2.89151 2.92889 3.35987 3.53457 3.68155 3.77980 3.95808 4.10541 4.13839 4.16985 4.25452 4.27830 4.31636 4.36078 4.44378 4.50593 4.53594 4.60491 4.63833 4.64667 4.69300 4.70265 4.81253 4.86726 4.93485 4.96199 5.00717 5.07531 5.13838 5.17923 5.19201 5.30044 5.43642 5.49337 5.60232 5.65548 5.69075 5.72653 5.89160 6.14870 6.35879 6.39214 6.48486 7.15642 7.21883 7.94809 8.39047 9.25964 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.025598 B = 0.002288 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.581610 B =12237.181365 C =12371.843557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.064 4.064 3 H 0.120 0.880 4 C 0.513 3.487 5 O -0.577 6.577 6 N -0.602 5.602 7 C 0.075 3.925 8 C 0.126 3.874 9 C 0.053 3.947 10 O -0.378 6.378 11 C 0.052 3.948 12 C 0.151 3.849 13 N -0.613 5.613 14 C 0.194 3.806 15 C -0.260 4.260 16 H 0.070 0.930 17 C -0.054 4.054 18 N -0.933 5.933 19 Si 0.964 3.036 20 H -0.267 1.267 21 H -0.292 1.292 22 H -0.296 1.296 23 C -0.080 4.080 24 C -0.124 4.124 25 C -0.129 4.129 26 C -0.128 4.128 27 C -0.135 4.135 28 C -0.103 4.103 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.044 0.956 38 H 0.038 0.962 39 H 0.018 0.982 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.005 0.995 44 H 0.008 0.992 45 H 0.024 0.976 46 H 0.245 0.755 47 H 0.136 0.864 48 H 0.143 0.857 49 H 0.142 0.858 50 H 0.133 0.867 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.067 -4.111 -23.955 24.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 H 0.138 0.862 4 C 0.302 3.698 5 O -0.457 6.457 6 N -0.333 5.333 7 C -0.067 4.067 8 C 0.003 3.997 9 C -0.025 4.025 10 O -0.297 6.297 11 C -0.027 4.027 12 C 0.024 3.976 13 N -0.336 5.336 14 C 0.049 3.951 15 C -0.390 4.390 16 H 0.088 0.912 17 C -0.249 4.249 18 N -0.580 5.580 19 Si 0.793 3.207 20 H -0.191 1.191 21 H -0.219 1.219 22 H -0.223 1.223 23 C -0.080 4.080 24 C -0.142 4.142 25 C -0.147 4.147 26 C -0.146 4.146 27 C -0.153 4.153 28 C -0.121 4.121 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.024 0.976 44 H 0.027 0.973 45 H 0.043 0.957 46 H 0.054 0.946 47 H 0.154 0.846 48 H 0.161 0.839 49 H 0.159 0.841 50 H 0.151 0.849 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.011 -4.550 -23.881 24.496 hybrid contribution 0.621 -0.487 1.584 1.770 sum -2.389 -5.037 -22.297 22.983 Atomic orbital electron populations 1.22055 0.90338 1.03153 1.04939 1.20295 0.99154 1.00255 0.88801 0.86247 1.21068 0.79441 0.84168 0.85073 1.90673 1.39712 1.28341 1.86941 1.47807 1.50937 1.29679 1.04896 1.22165 0.94180 0.86209 1.04103 1.21390 0.94486 0.96553 0.87275 1.22783 0.98018 0.84272 0.97427 1.87901 1.32303 1.23845 1.85614 1.23234 0.86584 0.96649 0.96266 1.21063 0.95160 0.92350 0.89000 1.44119 1.02229 1.85759 1.01455 1.20376 0.82687 0.97394 0.94623 1.19568 0.99995 1.34276 0.85168 0.91239 1.25747 0.98499 0.98947 1.01705 1.70253 1.17316 1.41073 1.29369 0.85253 0.77865 0.76864 0.80761 1.19121 1.21888 1.22317 1.19517 0.98665 0.94589 0.95265 1.21306 0.97404 1.00816 0.94700 1.21422 1.00225 0.95228 0.97846 1.21455 0.98053 0.95129 0.99943 1.21371 0.98684 1.00642 0.94620 1.20980 0.99853 0.94353 0.96942 0.92811 0.89324 0.89771 0.90475 0.91456 0.89008 0.89569 0.88973 0.93829 0.94331 0.96344 0.93102 0.91367 0.91824 0.97627 0.97307 0.95737 0.94584 0.84579 0.83900 0.84063 0.84926 0.87418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.64 71.98 0.62 -1.53 16 2 C -0.06 -1.24 2.10 -12.29 -0.03 -1.27 16 3 H 0.12 1.91 7.14 -2.39 -0.02 1.89 16 4 C 0.51 13.66 6.95 87.66 0.61 14.27 16 5 O -0.58 -19.64 14.69 -3.02 -0.04 -19.69 16 6 N -0.60 -15.45 2.84 -846.78 -2.40 -17.85 16 7 C 0.08 1.55 8.62 127.77 1.10 2.66 16 8 C 0.13 3.69 5.81 86.38 0.50 4.19 16 9 C 0.05 1.77 6.28 71.98 0.45 2.22 16 10 O -0.38 -14.26 8.72 -148.98 -1.30 -15.56 16 11 C 0.05 1.96 6.28 71.98 0.45 2.41 16 12 C 0.15 5.95 6.12 86.38 0.53 6.48 16 13 N -0.61 -30.47 2.89 -726.92 -2.10 -32.57 16 14 C 0.19 9.56 8.61 127.77 1.10 10.66 16 15 C -0.26 -14.18 9.67 84.03 0.81 -13.37 16 16 H 0.07 3.68 7.85 -2.91 -0.02 3.65 16 17 C -0.05 -3.03 5.12 84.86 0.43 -2.59 16 18 N -0.93 -55.23 10.62 21.65 0.23 -55.00 16 19 Si 0.96 45.26 29.57 68.60 2.03 47.28 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 23 C -0.08 -1.73 4.40 -19.86 -0.09 -1.81 16 24 C -0.12 -2.35 9.67 22.27 0.22 -2.14 16 25 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 26 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 27 C -0.14 -2.66 10.05 22.27 0.22 -2.44 16 28 C -0.10 -2.35 7.93 22.27 0.18 -2.17 16 29 H 0.05 0.87 7.39 -2.39 -0.02 0.85 16 30 H 0.09 1.10 4.53 -2.38 -0.01 1.08 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.27 6.95 -2.39 -0.02 1.26 16 33 H 0.07 1.79 7.11 -2.39 -0.02 1.77 16 34 H 0.09 1.44 6.01 -2.39 -0.01 1.43 16 35 H 0.09 2.57 8.07 -2.39 -0.02 2.55 16 36 H 0.09 2.67 7.42 -2.39 -0.02 2.65 16 37 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.07 2.53 8.03 -2.39 -0.02 2.51 16 42 H 0.06 2.25 7.87 -2.39 -0.02 2.23 16 43 H 0.01 0.29 7.43 -2.39 -0.02 0.28 16 44 H 0.01 0.45 7.20 -2.38 -0.02 0.43 16 45 H 0.02 1.02 7.85 -2.39 -0.02 1.00 16 46 H 0.24 14.12 8.31 -92.71 -0.77 13.35 16 47 H 0.14 2.01 7.95 -2.91 -0.02 1.99 16 48 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 49 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 50 H 0.13 2.09 8.06 -2.92 -0.02 2.07 16 51 H 0.11 2.55 7.52 -2.91 -0.02 2.53 16 Total: -1.00 -71.13 406.47 4.87 -66.26 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.89 Total: 15.49 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 7.56 Total: 11.64 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -4.27 Total: -105.43 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -1.34 Total: -35.25 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -71.13 4.87 -66.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692307667.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.764 kcal (2) G-P(sol) polarization free energy of solvation -71.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds