Wall clock time and date at job start Tue Mar 31 2020 19:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47107 * 2 1 4 4 C 1.50697 * 109.47116 * 120.00138 * 2 1 3 5 5 O 1.21287 * 120.00015 * 105.76613 * 4 2 1 6 6 N 1.34774 * 120.00163 * 285.76298 * 4 2 1 7 7 C 1.46925 * 120.63033 * 5.30500 * 6 4 2 8 8 C 1.52755 * 109.01066 * 233.58123 * 7 6 4 9 9 C 1.53045 * 109.38441 * 305.59164 * 8 7 6 10 10 C 1.53002 * 109.45747 * 181.25981 * 9 8 7 11 11 C 1.52999 * 109.47580 * 64.93159 * 10 9 8 12 12 N 1.46499 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.46492 * 119.99889 * 269.99650 * 12 11 10 14 14 C 1.36941 * 119.99711 * 90.00194 * 12 11 10 15 15 H 1.08000 * 120.00422 * 19.75727 * 14 12 11 16 16 C 1.38812 * 119.99825 * 199.76647 * 14 12 11 17 17 N 1.31629 * 119.99710 * 15.31039 * 16 14 12 18 18 Si 1.86797 * 120.00009 * 195.31352 * 16 14 12 19 19 H 1.48495 * 109.47008 * 59.99967 * 18 16 14 20 20 H 1.48506 * 109.47125 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47265 * 299.99491 * 18 16 14 22 22 C 1.53039 * 109.53786 * 61.23492 * 9 8 7 23 23 C 1.46928 * 120.63340 * 185.57907 * 6 4 2 24 24 C 1.50700 * 109.47302 * 240.00200 * 2 1 3 25 25 C 1.34513 * 125.79046 * 119.99709 * 24 2 1 26 26 C 1.41378 * 106.84384 * 180.02562 * 25 24 2 27 27 C 1.34514 * 106.83984 * 0.02562 * 26 25 24 28 28 O 1.34299 * 125.79163 * 300.02354 * 24 2 1 29 29 H 1.08994 * 109.47660 * 305.36006 * 1 2 3 30 30 H 1.09002 * 109.47401 * 65.36243 * 1 2 3 31 31 H 1.09006 * 109.46897 * 185.36052 * 1 2 3 32 32 H 1.08998 * 109.58659 * 353.41518 * 7 6 4 33 33 H 1.09004 * 109.58679 * 113.83807 * 7 6 4 34 34 H 1.08994 * 109.57157 * 185.55079 * 8 7 6 35 35 H 1.09004 * 109.35725 * 65.49707 * 8 7 6 36 36 H 1.09000 * 109.45579 * 301.21333 * 9 8 7 37 37 H 1.09004 * 109.46482 * 184.92908 * 10 9 8 38 38 H 1.09000 * 109.46870 * 304.92161 * 10 9 8 39 39 H 1.09003 * 109.46623 * 299.99802 * 11 10 9 40 40 H 1.09003 * 109.47385 * 59.99335 * 11 10 9 41 41 H 1.09000 * 109.47024 * 94.76124 * 13 12 11 42 42 H 1.09005 * 109.47037 * 214.75760 * 13 12 11 43 43 H 1.09000 * 109.47707 * 334.75605 * 13 12 11 44 44 H 0.96996 * 119.99595 * 180.02562 * 17 16 14 45 45 H 1.09003 * 109.49548 * 178.68585 * 22 9 8 46 46 H 1.08997 * 109.52317 * 58.61060 * 22 9 8 47 47 H 1.08991 * 109.58984 * 246.16099 * 23 6 4 48 48 H 1.09009 * 109.58413 * 6.44475 * 23 6 4 49 49 H 1.08002 * 126.57905 * 359.97438 * 25 24 2 50 50 H 1.07998 * 126.58520 * 179.97438 * 26 25 24 51 51 H 1.07999 * 125.79088 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.5035 -1.8242 1.1377 6 7 1.9580 -0.1082 2.4338 7 6 1.2861 1.1901 2.5810 8 6 2.2410 2.1705 3.2595 9 6 2.7383 1.5670 4.5751 10 6 3.6704 2.5607 5.2714 11 6 2.8797 3.8084 5.6700 12 7 3.7721 4.7595 6.3373 13 6 3.9460 4.7048 7.7908 14 6 4.4437 5.6997 5.6022 15 1 4.0972 5.9605 4.6131 16 6 5.5699 6.3176 6.1284 17 7 6.1697 5.8054 7.1822 18 14 6.2341 7.8758 5.3410 19 1 5.1926 8.9336 5.3816 20 1 7.4339 8.3344 6.0863 21 1 6.6034 7.5987 3.9296 22 6 3.4983 0.2700 4.2882 23 6 2.5526 -0.7346 3.6225 24 6 2.0324 -0.7104 -1.2305 25 6 2.8089 -0.1719 -2.1877 26 6 3.0378 -1.1845 -3.1474 27 6 2.3870 -2.2812 -2.7194 28 8 1.7803 -1.9883 -1.5576 29 1 -0.3634 0.5947 0.8380 30 1 -0.3634 0.4284 -0.9341 31 1 -0.3633 -1.0232 0.0960 32 1 1.0099 1.5721 1.5982 33 1 0.3923 1.0716 3.1936 34 1 1.7201 3.1062 3.4624 35 1 3.0898 2.3611 2.6028 36 1 1.8870 1.3538 5.2215 37 1 4.0933 2.0983 6.1633 38 1 4.4748 2.8418 4.5917 39 1 2.4568 4.2708 4.7781 40 1 2.0753 3.5272 6.3497 41 1 4.8251 4.1062 8.0293 42 1 4.0778 5.7148 8.1792 43 1 3.0644 4.2529 8.2455 44 1 6.9564 6.2373 7.5500 45 1 3.8722 -0.1470 5.2233 46 1 4.3356 0.4781 3.6222 47 1 1.7643 -1.0132 4.3217 48 1 3.1099 -1.6236 3.3268 49 1 3.1847 0.8402 -2.2180 50 1 3.6223 -1.0947 -4.0511 51 1 2.3575 -3.2355 -3.2243 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698955500.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:59 Heat of formation + Delta-G solvation = -6.145563 kcal Electronic energy + Delta-G solvation = -29293.302726 eV Core-core repulsion = 25387.841506 eV Total energy + Delta-G solvation = -3905.461220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.75051 -40.43302 -37.95877 -35.78232 -34.74504 -33.66403 -33.00631 -31.32451 -31.02813 -28.93917 -28.59827 -25.96504 -25.60434 -24.36161 -23.39505 -22.46751 -21.91098 -21.19964 -20.23982 -19.89175 -19.09990 -17.49084 -17.35661 -16.68876 -16.16079 -15.96329 -15.38695 -14.89162 -14.78248 -14.41628 -14.29362 -13.94802 -13.88796 -13.66950 -13.40687 -13.33174 -12.95818 -12.84094 -12.72438 -12.53131 -12.48595 -12.34361 -11.95897 -11.87863 -11.77875 -11.24479 -11.23514 -10.99360 -10.87784 -10.65881 -10.50057 -10.35079 -10.17247 -10.07869 -10.02916 -9.83370 -9.76168 -9.64806 -8.76235 -8.63103 -8.50241 -6.74156 -5.69929 -3.12081 1.55246 2.37672 2.46931 2.78956 2.90769 3.39385 3.45274 3.45886 4.19647 4.22121 4.52371 4.61312 4.62881 4.75790 4.88772 4.90454 4.92693 4.98640 5.05082 5.21745 5.24163 5.31489 5.34572 5.45300 5.50391 5.61286 5.62978 5.68831 5.70975 5.74818 5.81269 5.85179 5.91245 5.98108 6.12102 6.17715 6.30728 6.31461 6.35144 6.45036 6.51650 6.58695 6.77579 6.95006 7.00283 7.14413 7.23196 7.40590 7.74054 7.82646 7.99436 8.42210 9.26762 9.91962 10.39913 11.35737 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016022 B = 0.002371 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.226110 B =11806.396693 C =12738.897921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.031 4.031 3 H 0.124 0.876 4 C 0.519 3.481 5 O -0.532 6.532 6 N -0.607 5.607 7 C 0.101 3.899 8 C -0.133 4.133 9 C -0.084 4.084 10 C -0.132 4.132 11 C 0.153 3.847 12 N -0.605 5.605 13 C 0.164 3.836 14 C -0.251 4.251 15 H 0.068 0.932 16 C -0.002 4.002 17 N -0.909 5.909 18 Si 0.902 3.098 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.284 1.284 22 C -0.129 4.129 23 C 0.113 3.887 24 C 0.011 3.989 25 C -0.208 4.208 26 C -0.217 4.217 27 C -0.040 4.040 28 O -0.157 6.157 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.043 0.957 40 H 0.033 0.967 41 H 0.026 0.974 42 H 0.042 0.958 43 H -0.004 1.004 44 H 0.252 0.748 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.088 0.912 49 H 0.148 0.852 50 H 0.147 0.853 51 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.675 -13.781 -15.253 24.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.052 4.052 3 H 0.142 0.858 4 C 0.306 3.694 5 O -0.408 6.408 6 N -0.340 5.340 7 C -0.022 4.022 8 C -0.171 4.171 9 C -0.103 4.103 10 C -0.172 4.172 11 C 0.026 3.974 12 N -0.328 5.328 13 C 0.019 3.981 14 C -0.380 4.380 15 H 0.085 0.915 16 C -0.200 4.200 17 N -0.554 5.554 18 Si 0.732 3.268 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.210 1.210 22 C -0.167 4.167 23 C -0.009 4.009 24 C -0.040 4.040 25 C -0.227 4.227 26 C -0.236 4.236 27 C -0.108 4.108 28 O -0.052 6.052 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.045 0.955 42 H 0.061 0.939 43 H 0.014 0.986 44 H 0.062 0.938 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.106 0.894 49 H 0.166 0.834 50 H 0.165 0.835 51 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -12.455 -14.498 -14.994 24.292 hybrid contribution 0.885 0.988 -0.548 1.435 sum -11.569 -13.510 -15.542 23.620 Atomic orbital electron populations 1.21899 0.91148 1.03771 1.03669 1.19911 0.98367 0.99213 0.87682 0.85850 1.20341 0.78800 0.86225 0.84049 1.90725 1.45336 1.18999 1.85702 1.48092 1.56470 1.21614 1.07842 1.21920 0.95736 0.82833 1.01690 1.21979 0.99518 0.98293 0.97266 1.21155 0.98634 0.94708 0.95842 1.22286 0.98770 0.96492 0.99667 1.20862 0.91942 0.89051 0.95548 1.44009 1.51320 1.34650 1.02829 1.20769 0.94876 0.99918 0.82496 1.19151 1.05500 1.13313 1.00069 0.91460 1.24950 0.96394 1.00027 0.98619 1.70084 1.20722 1.39218 1.25413 0.86369 0.78084 0.83759 0.78551 1.21179 1.21700 1.21031 1.21993 0.98255 0.95620 1.00830 1.21651 0.96761 0.96631 0.85853 1.21558 1.02086 0.82885 0.97482 1.21577 1.03594 1.01469 0.96033 1.21784 1.05743 0.93589 1.02456 1.24038 0.99176 1.00747 0.86842 1.84053 1.58865 1.27535 1.34723 0.90569 0.90740 0.91409 0.89717 0.90949 0.89783 0.91381 0.91529 0.92778 0.92020 0.93900 0.94865 0.95522 0.93895 0.98552 0.93801 0.90686 0.91592 0.91562 0.89380 0.83422 0.83501 0.78260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.83 37.16 0.33 -0.76 16 2 C -0.03 -0.30 2.27 -92.93 -0.21 -0.51 16 3 H 0.12 0.95 7.12 -51.93 -0.37 0.58 16 4 C 0.52 6.56 6.93 -10.99 -0.08 6.49 16 5 O -0.53 -8.82 15.15 -6.37 -0.10 -8.92 16 6 N -0.61 -6.73 2.98 -173.04 -0.52 -7.25 16 7 C 0.10 0.89 5.40 -3.94 -0.02 0.86 16 8 C -0.13 -1.47 5.13 -26.83 -0.14 -1.61 16 9 C -0.08 -1.07 2.15 -90.58 -0.19 -1.27 16 10 C -0.13 -2.29 5.01 -26.73 -0.13 -2.42 16 11 C 0.15 2.97 5.46 -4.04 -0.02 2.94 16 12 N -0.61 -15.06 2.93 -181.12 -0.53 -15.59 16 13 C 0.16 4.06 9.02 59.84 0.54 4.60 16 14 C -0.25 -6.82 9.68 -15.06 -0.15 -6.97 16 15 H 0.07 1.78 7.86 -52.49 -0.41 1.36 16 16 C 0.00 -0.06 5.06 -17.43 -0.09 -0.15 16 17 N -0.91 -26.60 10.65 55.49 0.59 -26.01 16 18 Si 0.90 21.81 29.58 -169.99 -5.03 16.78 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C -0.13 -1.58 5.36 -26.61 -0.14 -1.72 16 23 C 0.11 1.30 6.42 -3.71 -0.02 1.27 16 24 C 0.01 0.13 5.34 -35.63 -0.19 -0.06 16 25 C -0.21 -2.22 10.78 -39.70 -0.43 -2.65 16 26 C -0.22 -2.12 10.91 -39.70 -0.43 -2.56 16 27 C -0.04 -0.39 12.09 29.42 0.36 -0.04 16 28 O -0.16 -1.98 10.13 -6.20 -0.06 -2.05 16 29 H 0.08 0.44 6.08 -51.93 -0.32 0.12 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.57 4.61 -51.93 -0.24 0.33 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.92 6.50 -51.93 -0.34 0.58 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.04 0.79 6.42 -51.93 -0.33 0.46 16 40 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 41 H 0.03 0.71 7.43 -51.93 -0.39 0.32 16 42 H 0.04 1.14 7.16 -51.93 -0.37 0.77 16 43 H 0.00 -0.09 7.84 -51.93 -0.41 -0.49 16 44 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.09 1.13 7.04 -51.92 -0.37 0.76 16 49 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 50 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 51 H 0.20 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 398.41 15.07 6.00 6.00 Total: -1.00 -33.93 398.41 -9.24 -43.18 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -8.58 Total: -1.62 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -1.03 Total: -4.53 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.45 Total: -48.85 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -0.16 Total: -10.96 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.93 -9.24 -43.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698955500.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.031 kcal (2) G-P(sol) polarization free energy of solvation -33.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds