Wall clock time and date at job start Tue Mar 31 2020 19:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47107 * 2 1 4 4 C 1.50697 * 109.47116 * 120.00138 * 2 1 3 5 5 O 1.21287 * 120.00015 * 105.76613 * 4 2 1 6 6 N 1.34774 * 120.00163 * 285.76298 * 4 2 1 7 7 C 1.46925 * 120.63033 * 5.30500 * 6 4 2 8 8 C 1.52755 * 109.01066 * 233.58123 * 7 6 4 9 9 C 1.53045 * 109.38441 * 305.59164 * 8 7 6 10 10 C 1.53002 * 109.45747 * 181.25981 * 9 8 7 11 11 C 1.52999 * 109.47580 * 64.93159 * 10 9 8 12 12 N 1.46499 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.46492 * 119.99889 * 269.99650 * 12 11 10 14 14 C 1.36941 * 119.99711 * 90.00194 * 12 11 10 15 15 H 1.08000 * 120.00422 * 19.75727 * 14 12 11 16 16 C 1.38812 * 119.99825 * 199.76647 * 14 12 11 17 17 N 1.31629 * 119.99710 * 15.31039 * 16 14 12 18 18 Si 1.86797 * 120.00009 * 195.31352 * 16 14 12 19 19 H 1.48495 * 109.47008 * 59.99967 * 18 16 14 20 20 H 1.48506 * 109.47125 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47265 * 299.99491 * 18 16 14 22 22 C 1.53039 * 109.53786 * 61.23492 * 9 8 7 23 23 C 1.46928 * 120.63340 * 185.57907 * 6 4 2 24 24 C 1.50700 * 109.47302 * 240.00200 * 2 1 3 25 25 C 1.34513 * 125.79046 * 119.99709 * 24 2 1 26 26 C 1.41378 * 106.84384 * 180.02562 * 25 24 2 27 27 C 1.34514 * 106.83984 * 0.02562 * 26 25 24 28 28 O 1.34299 * 125.79163 * 300.02354 * 24 2 1 29 29 H 1.08994 * 109.47660 * 305.36006 * 1 2 3 30 30 H 1.09002 * 109.47401 * 65.36243 * 1 2 3 31 31 H 1.09006 * 109.46897 * 185.36052 * 1 2 3 32 32 H 1.08998 * 109.58659 * 353.41518 * 7 6 4 33 33 H 1.09004 * 109.58679 * 113.83807 * 7 6 4 34 34 H 1.08994 * 109.57157 * 185.55079 * 8 7 6 35 35 H 1.09004 * 109.35725 * 65.49707 * 8 7 6 36 36 H 1.09000 * 109.45579 * 301.21333 * 9 8 7 37 37 H 1.09004 * 109.46482 * 184.92908 * 10 9 8 38 38 H 1.09000 * 109.46870 * 304.92161 * 10 9 8 39 39 H 1.09003 * 109.46623 * 299.99802 * 11 10 9 40 40 H 1.09003 * 109.47385 * 59.99335 * 11 10 9 41 41 H 1.09000 * 109.47024 * 94.76124 * 13 12 11 42 42 H 1.09005 * 109.47037 * 214.75760 * 13 12 11 43 43 H 1.09000 * 109.47707 * 334.75605 * 13 12 11 44 44 H 0.96996 * 119.99595 * 180.02562 * 17 16 14 45 45 H 1.09003 * 109.49548 * 178.68585 * 22 9 8 46 46 H 1.08997 * 109.52317 * 58.61060 * 22 9 8 47 47 H 1.08991 * 109.58984 * 246.16099 * 23 6 4 48 48 H 1.09009 * 109.58413 * 6.44475 * 23 6 4 49 49 H 1.08002 * 126.57905 * 359.97438 * 25 24 2 50 50 H 1.07998 * 126.58520 * 179.97438 * 26 25 24 51 51 H 1.07999 * 125.79088 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.5035 -1.8242 1.1377 6 7 1.9580 -0.1082 2.4338 7 6 1.2861 1.1901 2.5810 8 6 2.2410 2.1705 3.2595 9 6 2.7383 1.5670 4.5751 10 6 3.6704 2.5607 5.2714 11 6 2.8797 3.8084 5.6700 12 7 3.7721 4.7595 6.3373 13 6 3.9460 4.7048 7.7908 14 6 4.4437 5.6997 5.6022 15 1 4.0972 5.9605 4.6131 16 6 5.5699 6.3176 6.1284 17 7 6.1697 5.8054 7.1822 18 14 6.2341 7.8758 5.3410 19 1 5.1926 8.9336 5.3816 20 1 7.4339 8.3344 6.0863 21 1 6.6034 7.5987 3.9296 22 6 3.4983 0.2700 4.2882 23 6 2.5526 -0.7346 3.6225 24 6 2.0324 -0.7104 -1.2305 25 6 2.8089 -0.1719 -2.1877 26 6 3.0378 -1.1845 -3.1474 27 6 2.3870 -2.2812 -2.7194 28 8 1.7803 -1.9883 -1.5576 29 1 -0.3634 0.5947 0.8380 30 1 -0.3634 0.4284 -0.9341 31 1 -0.3633 -1.0232 0.0960 32 1 1.0099 1.5721 1.5982 33 1 0.3923 1.0716 3.1936 34 1 1.7201 3.1062 3.4624 35 1 3.0898 2.3611 2.6028 36 1 1.8870 1.3538 5.2215 37 1 4.0933 2.0983 6.1633 38 1 4.4748 2.8418 4.5917 39 1 2.4568 4.2708 4.7781 40 1 2.0753 3.5272 6.3497 41 1 4.8251 4.1062 8.0293 42 1 4.0778 5.7148 8.1792 43 1 3.0644 4.2529 8.2455 44 1 6.9564 6.2373 7.5500 45 1 3.8722 -0.1470 5.2233 46 1 4.3356 0.4781 3.6222 47 1 1.7643 -1.0132 4.3217 48 1 3.1099 -1.6236 3.3268 49 1 3.1847 0.8402 -2.2180 50 1 3.6223 -1.0947 -4.0511 51 1 2.3575 -3.2355 -3.2243 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698955500.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:57 Heat of formation + Delta-G solvation = -24.679188 kcal Electronic energy + Delta-G solvation = -29294.106404 eV Core-core repulsion = 25387.841506 eV Total energy + Delta-G solvation = -3906.264898 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.52449 -41.35822 -39.06923 -37.46403 -35.64750 -34.87727 -33.78616 -33.05986 -32.01577 -30.20394 -29.47209 -27.91218 -26.84490 -25.40419 -24.29453 -23.79743 -22.68547 -22.35820 -21.54691 -20.97466 -19.99007 -18.70823 -18.27009 -18.22910 -17.01385 -16.84029 -16.76565 -16.26558 -15.84321 -15.59313 -15.41000 -15.24318 -15.10614 -14.72710 -14.66021 -14.32900 -14.02274 -13.94882 -13.70409 -13.69863 -13.52316 -13.24499 -13.04488 -12.92467 -12.75578 -12.66993 -12.56803 -12.52953 -12.42861 -12.14711 -12.06734 -11.98068 -11.69444 -11.51963 -11.29304 -11.10614 -10.87114 -10.72980 -10.58010 -9.68191 -9.39746 -8.75831 -7.79960 -5.23676 0.77529 1.47085 1.49541 1.50198 1.55812 1.67795 2.00052 2.15113 2.54017 3.33360 3.41089 3.52828 3.68541 3.81150 3.92973 3.97735 4.05535 4.07655 4.15464 4.19011 4.29904 4.36402 4.43071 4.52240 4.61611 4.70613 4.73678 4.78689 4.82146 4.83494 4.89710 4.93325 4.93882 4.99904 5.00499 5.11564 5.12203 5.14802 5.25220 5.27440 5.32088 5.36783 5.49723 5.60285 5.61383 5.63258 5.70075 5.76663 6.24172 6.35641 6.36403 7.07706 7.18762 7.93991 8.36062 9.24308 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016022 B = 0.002371 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.226110 B =11806.396693 C =12738.897921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.028 4.028 3 H 0.146 0.854 4 C 0.513 3.487 5 O -0.580 6.580 6 N -0.604 5.604 7 C 0.102 3.898 8 C -0.130 4.130 9 C -0.074 4.074 10 C -0.117 4.117 11 C 0.149 3.851 12 N -0.624 5.624 13 C 0.177 3.823 14 C -0.254 4.254 15 H 0.075 0.925 16 C -0.062 4.062 17 N -0.943 5.943 18 Si 0.965 3.035 19 H -0.277 1.277 20 H -0.299 1.299 21 H -0.276 1.276 22 C -0.122 4.122 23 C 0.117 3.883 24 C -0.013 4.013 25 C -0.218 4.218 26 C -0.228 4.228 27 C -0.048 4.048 28 O -0.183 6.183 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.033 0.967 38 H 0.027 0.973 39 H 0.057 0.943 40 H 0.057 0.943 41 H -0.003 1.003 42 H 0.015 0.985 43 H 0.032 0.968 44 H 0.245 0.755 45 H 0.075 0.925 46 H 0.044 0.956 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.163 0.837 50 H 0.168 0.832 51 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.012 -13.278 -16.711 26.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.048 4.048 3 H 0.163 0.837 4 C 0.302 3.698 5 O -0.460 6.460 6 N -0.337 5.337 7 C -0.019 4.019 8 C -0.168 4.168 9 C -0.093 4.093 10 C -0.157 4.157 11 C 0.024 3.976 12 N -0.347 5.347 13 C 0.032 3.968 14 C -0.384 4.384 15 H 0.092 0.908 16 C -0.256 4.256 17 N -0.590 5.590 18 Si 0.794 3.206 19 H -0.203 1.203 20 H -0.225 1.225 21 H -0.202 1.202 22 C -0.161 4.161 23 C -0.006 4.006 24 C -0.064 4.064 25 C -0.237 4.237 26 C -0.247 4.247 27 C -0.116 4.116 28 O -0.079 6.079 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.129 0.871 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.016 0.984 42 H 0.033 0.967 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.105 0.895 48 H 0.088 0.912 49 H 0.180 0.820 50 H 0.186 0.814 51 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -14.837 -13.982 -16.471 26.209 hybrid contribution 1.604 0.777 -0.103 1.786 sum -13.232 -13.205 -16.574 24.983 Atomic orbital electron populations 1.21906 0.89234 1.03357 1.05381 1.20042 0.99857 0.99465 0.85479 0.83666 1.20910 0.77995 0.85806 0.85085 1.90698 1.47611 1.21261 1.86435 1.48202 1.55953 1.22230 1.07283 1.22120 0.95417 0.80895 1.03496 1.21942 0.99608 0.99229 0.96011 1.21056 0.98027 0.93383 0.96823 1.22034 0.98420 0.96832 0.98443 1.21099 0.91610 0.88649 0.96256 1.44320 1.51620 1.35805 1.02979 1.20512 0.95229 0.97958 0.83099 1.19530 1.05167 1.13470 1.00251 0.90772 1.25732 0.97223 1.03040 0.99587 1.70262 1.21179 1.40481 1.27116 0.85363 0.77140 0.80330 0.77794 1.20338 1.22507 1.20155 1.21900 0.97823 0.95843 1.00518 1.21566 0.97003 0.95616 0.86369 1.21995 1.02978 0.82892 0.98493 1.21930 1.03240 1.02423 0.96148 1.22150 1.05991 0.93402 1.03160 1.24767 0.98501 1.02153 0.86151 1.84037 1.59688 1.28279 1.35864 0.88334 0.89354 0.93012 0.87068 0.88444 0.88902 0.92975 0.89407 0.94799 0.95378 0.92485 0.92479 0.98421 0.96661 0.94992 0.94566 0.90592 0.93734 0.89496 0.91223 0.81960 0.81419 0.75257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.83 71.98 0.64 -1.09 16 2 C -0.03 -0.49 2.27 -12.29 -0.03 -0.51 16 3 H 0.15 1.83 7.12 -2.39 -0.02 1.81 16 4 C 0.51 12.49 6.93 87.66 0.61 13.10 16 5 O -0.58 -19.56 15.15 8.35 0.13 -19.44 16 6 N -0.60 -12.21 2.98 -819.75 -2.44 -14.65 16 7 C 0.10 1.41 5.40 86.22 0.47 1.87 16 8 C -0.13 -2.51 5.13 30.53 0.16 -2.35 16 9 C -0.07 -1.73 2.15 -10.76 -0.02 -1.75 16 10 C -0.12 -4.00 5.01 30.59 0.15 -3.84 16 11 C 0.15 5.48 5.46 86.38 0.47 5.95 16 12 N -0.62 -30.71 2.93 -726.94 -2.13 -32.84 16 13 C 0.18 8.79 9.02 127.77 1.15 9.94 16 14 C -0.25 -13.73 9.68 84.03 0.81 -12.92 16 15 H 0.07 3.83 7.86 -2.91 -0.02 3.81 16 16 C -0.06 -3.46 5.06 84.86 0.43 -3.03 16 17 N -0.94 -56.56 10.65 21.65 0.23 -56.33 16 18 Si 0.97 45.08 29.58 68.60 2.03 47.11 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 C -0.12 -2.92 5.36 30.67 0.16 -2.75 16 23 C 0.12 2.53 6.42 86.36 0.55 3.09 16 24 C -0.01 -0.29 5.34 24.83 0.13 -0.16 16 25 C -0.22 -4.44 10.78 22.19 0.24 -4.20 16 26 C -0.23 -4.21 10.91 22.19 0.24 -3.97 16 27 C -0.05 -0.91 12.09 66.97 0.81 -0.10 16 28 O -0.18 -4.60 10.13 8.96 0.09 -4.51 16 29 H 0.10 0.72 6.08 -2.39 -0.01 0.71 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.11 0.99 4.61 -2.39 -0.01 0.98 16 33 H 0.10 0.97 8.14 -2.38 -0.02 0.96 16 34 H 0.09 1.68 6.50 -2.39 -0.02 1.66 16 35 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.03 1.12 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.94 6.42 -2.39 -0.02 1.93 16 40 H 0.06 1.84 7.86 -2.39 -0.02 1.82 16 41 H 0.00 -0.14 7.43 -2.39 -0.02 -0.16 16 42 H 0.01 0.80 7.16 -2.38 -0.02 0.78 16 43 H 0.03 1.32 7.84 -2.39 -0.02 1.30 16 44 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 45 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.07 1.80 7.04 -2.38 -0.02 1.79 16 49 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 50 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 51 H 0.23 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -76.52 398.41 5.78 -70.73 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.90 Total: 12.66 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 6.98 Total: -2.74 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -4.34 Total: -103.82 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: 0.22 Total: -23.94 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -76.52 5.78 -70.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698955500.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.055 kcal (2) G-P(sol) polarization free energy of solvation -76.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds