Wall clock time and date at job start Tue Mar 31 2020 17:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 115.55379 * 2 1 4 4 C 1.53079 * 117.53031 * 214.29108 * 2 1 3 5 5 C 1.53002 * 59.98377 * 252.52649 * 4 2 1 6 6 H 1.08996 * 117.49925 * 252.49630 * 5 4 2 7 7 C 1.50693 * 117.49863 * 107.49932 * 5 4 2 8 8 C 1.34512 * 125.79192 * 171.25406 * 7 5 4 9 9 C 1.41380 * 106.84323 * 179.75170 * 8 7 5 10 10 C 1.34516 * 106.83979 * 0.37553 * 9 8 7 11 11 C 1.50704 * 125.78658 * 179.89443 * 10 9 8 12 12 C 1.52997 * 109.47458 * 89.71097 * 11 10 9 13 13 C 1.50693 * 109.47425 * 179.97438 * 12 11 10 14 14 O 1.21290 * 119.99884 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00550 * 179.97438 * 13 12 11 16 16 C 1.46504 * 119.99688 * 0.02562 * 15 13 12 17 17 C 1.46491 * 120.00295 * 180.02562 * 15 13 12 18 18 C 1.53004 * 109.47418 * 89.99953 * 17 15 13 19 19 N 1.46501 * 109.46869 * 179.97438 * 18 17 15 20 20 C 1.46495 * 119.99810 * 269.99335 * 19 18 17 21 21 C 1.36937 * 119.99950 * 90.00634 * 19 18 17 22 22 H 1.08002 * 120.00075 * 22.33354 * 21 19 18 23 23 C 1.38815 * 119.99760 * 202.33988 * 21 19 18 24 24 N 1.31613 * 119.99924 * 11.34622 * 23 21 19 25 25 Si 1.86795 * 119.99828 * 191.35280 * 23 21 19 26 26 H 1.48501 * 109.47231 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47448 * 119.99588 * 25 23 21 28 28 H 1.48503 * 109.47077 * 239.99850 * 25 23 21 29 29 O 1.34296 * 108.42165 * 359.62155 * 10 9 8 30 30 H 1.09007 * 109.46531 * 274.32734 * 1 2 3 31 31 H 1.09000 * 109.47437 * 34.32083 * 1 2 3 32 32 H 1.08996 * 109.47401 * 154.32832 * 1 2 3 33 33 H 1.09001 * 117.49204 * 145.04018 * 4 2 1 34 34 H 1.09000 * 117.51537 * 0.02562 * 4 2 1 35 35 H 1.08001 * 126.57716 * 359.97438 * 8 7 5 36 36 H 1.08002 * 126.57785 * 180.23303 * 9 8 7 37 37 H 1.08993 * 109.47295 * 329.70346 * 11 10 9 38 38 H 1.09005 * 109.46404 * 209.71215 * 11 10 9 39 39 H 1.09006 * 109.46969 * 299.99802 * 12 11 10 40 40 H 1.09003 * 109.47035 * 59.99084 * 12 11 10 41 41 H 1.09000 * 109.47370 * 89.99539 * 16 15 13 42 42 H 1.08997 * 109.47016 * 210.00128 * 16 15 13 43 43 H 1.09005 * 109.46729 * 329.99884 * 16 15 13 44 44 H 1.09006 * 109.47105 * 210.00219 * 17 15 13 45 45 H 1.08999 * 109.47221 * 329.99589 * 17 15 13 46 46 H 1.08999 * 109.46816 * 300.00317 * 18 17 15 47 47 H 1.08999 * 109.46710 * 59.99763 * 18 17 15 48 48 H 1.09001 * 109.46800 * 94.21743 * 20 19 18 49 49 H 1.09003 * 109.47399 * 214.21237 * 20 19 18 50 50 H 1.08993 * 109.47716 * 334.21714 * 20 19 18 51 51 H 0.97001 * 119.99646 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2375 -1.1215 -0.7648 5 6 2.2365 -1.1208 0.7652 6 1 3.1712 -0.8747 1.2690 7 6 1.3721 -2.1405 1.4609 8 6 1.3686 -2.3996 2.7808 9 6 0.4091 -3.4153 2.9964 10 6 -0.1105 -3.7220 1.7941 11 6 -1.1733 -4.7577 1.5316 12 6 -2.5549 -4.1087 1.6360 13 6 -3.6176 -5.1443 1.3729 14 8 -3.3011 -6.2890 1.1266 15 7 -4.9197 -4.7988 1.4123 16 6 -5.3020 -3.4163 1.7104 17 6 -5.9527 -5.8056 1.1571 18 6 -6.3534 -6.4709 2.4754 19 7 -7.3869 -7.4773 2.2201 20 6 -8.8021 -7.1012 2.2634 21 6 -7.0301 -8.7697 1.9414 22 1 -6.0646 -9.1420 2.2505 23 6 -7.9094 -9.6011 1.2613 24 7 -8.9829 -9.0975 0.6903 25 14 -7.5689 -11.4348 1.1567 26 1 -6.3071 -11.7458 1.8752 27 1 -8.6907 -12.1829 1.7791 28 1 -7.4380 -11.8335 -0.2678 29 8 0.4741 -2.9445 0.8683 30 1 -0.3633 0.0775 1.0248 31 1 -0.3634 0.8487 -0.5794 32 1 -0.3634 -0.9262 -0.4452 33 1 3.1728 -0.8754 -1.2676 34 1 1.6130 -1.8594 -1.2685 35 1 1.9789 -1.9209 3.5323 36 1 0.1456 -3.8612 3.9441 37 1 -1.0909 -5.5574 2.2676 38 1 -1.0399 -5.1696 0.5312 39 1 -2.6881 -3.6969 2.6365 40 1 -2.6371 -3.3089 0.9000 41 1 -5.3676 -2.8492 0.7818 42 1 -6.2701 -3.4069 2.2110 43 1 -4.5526 -2.9641 2.3601 44 1 -6.8249 -5.3266 0.7121 45 1 -5.5639 -6.5598 0.4730 46 1 -5.4812 -6.9498 2.9204 47 1 -6.7422 -5.7166 3.1595 48 1 -9.1435 -6.8552 1.2578 49 1 -9.3878 -7.9342 2.6522 50 1 -8.9281 -6.2344 2.9120 51 1 -9.5975 -9.6786 0.2154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699005308.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:21 Heat of formation + Delta-G solvation = 22.724673 kcal Electronic energy + Delta-G solvation = -28443.325000 eV Core-core repulsion = 24539.115687 eV Total energy + Delta-G solvation = -3904.209313 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.82824 -39.65028 -38.13524 -36.12496 -34.83884 -34.09462 -32.98937 -31.43644 -29.73303 -28.87716 -28.12185 -26.43081 -25.84615 -25.08976 -23.15880 -22.19098 -22.09963 -20.93277 -20.44532 -19.92619 -18.79667 -17.25566 -16.71875 -16.53227 -16.25593 -16.00683 -15.69296 -15.54662 -14.79136 -14.56943 -14.00825 -13.64044 -13.55686 -13.46261 -13.36435 -13.04159 -12.98136 -12.81274 -12.68137 -12.62335 -12.41415 -12.27584 -12.15333 -12.04176 -11.84843 -11.77369 -11.31912 -11.14186 -10.94709 -10.84682 -10.78935 -10.48448 -10.44551 -10.09135 -9.99075 -9.89569 -9.73880 -9.50491 -8.59033 -8.35063 -8.33531 -6.71472 -5.68344 -3.13426 1.46008 2.38726 2.62195 2.88966 3.30884 3.43199 3.43975 3.50137 3.53962 4.08691 4.26931 4.40425 4.51981 4.57483 4.77861 4.82770 4.89396 4.92661 4.94778 5.04497 5.18519 5.27369 5.37156 5.39708 5.42883 5.44015 5.49768 5.53071 5.59879 5.66174 5.69126 5.70893 5.71820 5.80413 5.86326 5.90321 5.92741 6.04823 6.27095 6.31257 6.36799 6.63606 6.74611 6.80310 7.03275 7.07565 7.40167 7.69691 7.74127 7.89124 8.43376 8.48305 9.29204 9.91024 10.38790 11.37275 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.020942 B = 0.002009 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.709136 B =13933.233486 C =14432.226179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.139 4.139 3 H 0.112 0.888 4 C -0.168 4.168 5 C -0.082 4.082 6 H 0.132 0.868 7 C 0.018 3.982 8 C -0.204 4.204 9 C -0.208 4.208 10 C -0.004 4.004 11 C -0.025 4.025 12 C -0.134 4.134 13 C 0.506 3.494 14 O -0.533 6.533 15 N -0.613 5.613 16 C 0.078 3.922 17 C 0.092 3.908 18 C 0.144 3.856 19 N -0.600 5.600 20 C 0.164 3.836 21 C -0.248 4.248 22 H 0.071 0.929 23 C -0.001 4.001 24 N -0.911 5.911 25 Si 0.906 3.094 26 H -0.277 1.277 27 H -0.290 1.290 28 H -0.290 1.290 29 O -0.170 6.170 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.046 0.954 47 H 0.034 0.966 48 H 0.028 0.972 49 H 0.046 0.954 50 H -0.005 1.005 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.642 22.207 1.726 29.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.157 4.157 3 H 0.130 0.870 4 C -0.204 4.204 5 C -0.100 4.100 6 H 0.150 0.850 7 C -0.032 4.032 8 C -0.223 4.223 9 C -0.227 4.227 10 C -0.054 4.054 11 C -0.063 4.063 12 C -0.174 4.174 13 C 0.293 3.707 14 O -0.410 6.410 15 N -0.347 5.347 16 C -0.066 4.066 17 C -0.032 4.032 18 C 0.016 3.984 19 N -0.323 5.323 20 C 0.019 3.981 21 C -0.378 4.378 22 H 0.088 0.912 23 C -0.199 4.199 24 N -0.557 5.557 25 Si 0.736 3.264 26 H -0.202 1.202 27 H -0.217 1.217 28 H -0.217 1.217 29 O -0.067 6.067 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.163 0.837 36 H 0.166 0.834 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.103 0.897 46 H 0.065 0.935 47 H 0.053 0.947 48 H 0.046 0.954 49 H 0.065 0.935 50 H 0.014 0.986 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 19.561 21.479 1.211 29.077 hybrid contribution 0.117 -0.802 0.055 0.813 sum 19.678 20.677 1.266 28.572 Atomic orbital electron populations 1.21382 0.92312 1.02400 1.02157 1.22522 0.96083 0.94119 1.03008 0.87002 1.23216 1.03055 1.01612 0.92565 1.20593 0.98739 0.96500 0.94185 0.85012 1.21208 0.94609 0.95833 0.91581 1.21448 1.03514 1.02029 0.95308 1.21581 1.00972 1.01710 0.98429 1.22464 0.99186 0.96674 0.87081 1.19884 0.87806 0.93086 1.05504 1.21682 0.92975 0.98553 1.04206 1.20467 0.83332 0.89306 0.77556 1.90754 1.81431 1.20679 1.48122 1.48092 1.06281 1.10431 1.69916 1.21771 1.01709 0.82559 1.00519 1.22619 0.88537 0.90176 1.01851 1.21104 0.92642 0.91127 0.93546 1.43981 1.00704 1.05496 1.82081 1.20818 0.84194 0.95495 0.97572 1.19313 1.02216 0.86440 1.29835 0.91166 1.25033 0.98191 0.98766 0.97867 1.70071 1.14326 1.33510 1.37805 0.86152 0.77571 0.85344 0.77361 1.20237 1.21691 1.21715 1.83939 1.43708 1.41353 1.37737 0.92108 0.91919 0.91984 0.88026 0.87986 0.83711 0.83411 0.87822 0.89260 0.88654 0.88990 0.92940 0.90844 0.91479 0.91514 0.89668 0.93541 0.94734 0.95383 0.93538 0.98614 0.93872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 9.15 37.15 0.34 -0.57 16 2 C -0.14 -0.90 6.41 -90.58 -0.58 -1.49 16 3 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.17 -1.14 9.82 -26.69 -0.26 -1.40 16 5 C -0.08 -0.60 6.23 -91.77 -0.57 -1.17 16 6 H 0.13 0.72 8.14 -51.93 -0.42 0.29 16 7 C 0.02 0.17 5.90 -35.63 -0.21 -0.04 16 8 C -0.20 -1.97 10.81 -39.70 -0.43 -2.40 16 9 C -0.21 -2.14 10.81 -39.70 -0.43 -2.57 16 10 C 0.00 -0.05 6.58 -35.62 -0.23 -0.28 16 11 C -0.03 -0.29 5.04 -27.88 -0.14 -0.43 16 12 C -0.13 -1.47 4.23 -27.89 -0.12 -1.58 16 13 C 0.51 7.94 7.67 -10.99 -0.08 7.86 16 14 O -0.53 -10.82 15.56 5.55 0.09 -10.73 16 15 N -0.61 -9.38 2.87 -181.57 -0.52 -9.90 16 16 C 0.08 0.82 10.24 59.85 0.61 1.43 16 17 C 0.09 1.81 5.73 -4.04 -0.02 1.78 16 18 C 0.14 3.09 6.03 -4.04 -0.02 3.07 16 19 N -0.60 -15.54 2.93 -181.12 -0.53 -16.07 16 20 C 0.16 4.07 9.01 59.84 0.54 4.61 16 21 C -0.25 -7.11 9.67 -15.06 -0.15 -7.26 16 22 H 0.07 2.03 7.85 -52.49 -0.41 1.62 16 23 C 0.00 -0.03 5.13 -17.43 -0.09 -0.12 16 24 N -0.91 -27.03 10.59 55.49 0.59 -26.45 16 25 Si 0.91 22.74 29.57 -169.99 -5.03 17.71 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 O -0.17 -1.95 9.63 5.70 0.05 -1.90 16 30 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.53 7.27 -51.93 -0.38 0.15 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.82 7.88 -51.93 -0.41 0.41 16 35 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.10 1.21 8.10 -51.93 -0.42 0.78 16 38 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 39 H 0.10 0.87 7.40 -51.93 -0.38 0.48 16 40 H 0.09 0.88 8.11 -51.93 -0.42 0.46 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 43 H 0.07 0.54 6.44 -51.93 -0.33 0.20 16 44 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 45 H 0.08 1.99 7.42 -51.93 -0.39 1.61 16 46 H 0.05 1.06 8.03 -51.93 -0.42 0.64 16 47 H 0.03 0.66 7.86 -51.93 -0.41 0.25 16 48 H 0.03 0.74 7.42 -51.93 -0.39 0.35 16 49 H 0.05 1.24 7.19 -51.93 -0.37 0.87 16 50 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 51 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 LS Contribution 417.25 15.07 6.29 6.29 Total: -1.00 -33.81 417.25 -9.82 -43.63 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -8.91 Total: -2.02 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -1.85 Total: -0.56 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.46 Total: -52.41 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.14 Total: -12.63 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.03 Total: 17.71 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.81 -9.82 -43.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699005308.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.354 kcal (2) G-P(sol) polarization free energy of solvation -33.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds