Wall clock time and date at job start Tue Mar 31 2020 17:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 115.55379 * 2 1 4 4 C 1.53079 * 117.53031 * 214.29108 * 2 1 3 5 5 C 1.53002 * 59.98377 * 252.52649 * 4 2 1 6 6 H 1.08996 * 117.49925 * 252.49630 * 5 4 2 7 7 C 1.50693 * 117.49863 * 107.49932 * 5 4 2 8 8 C 1.34512 * 125.79192 * 171.25406 * 7 5 4 9 9 C 1.41380 * 106.84323 * 179.75170 * 8 7 5 10 10 C 1.34516 * 106.83979 * 0.37553 * 9 8 7 11 11 C 1.50704 * 125.78658 * 179.89443 * 10 9 8 12 12 C 1.52997 * 109.47458 * 89.71097 * 11 10 9 13 13 C 1.50693 * 109.47425 * 179.97438 * 12 11 10 14 14 O 1.21290 * 119.99884 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00550 * 179.97438 * 13 12 11 16 16 C 1.46504 * 119.99688 * 0.02562 * 15 13 12 17 17 C 1.46491 * 120.00295 * 180.02562 * 15 13 12 18 18 C 1.53004 * 109.47418 * 89.99953 * 17 15 13 19 19 N 1.46501 * 109.46869 * 179.97438 * 18 17 15 20 20 C 1.46495 * 119.99810 * 269.99335 * 19 18 17 21 21 C 1.36937 * 119.99950 * 90.00634 * 19 18 17 22 22 H 1.08002 * 120.00075 * 22.33354 * 21 19 18 23 23 C 1.38815 * 119.99760 * 202.33988 * 21 19 18 24 24 N 1.31613 * 119.99924 * 11.34622 * 23 21 19 25 25 Si 1.86795 * 119.99828 * 191.35280 * 23 21 19 26 26 H 1.48501 * 109.47231 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47448 * 119.99588 * 25 23 21 28 28 H 1.48503 * 109.47077 * 239.99850 * 25 23 21 29 29 O 1.34296 * 108.42165 * 359.62155 * 10 9 8 30 30 H 1.09007 * 109.46531 * 274.32734 * 1 2 3 31 31 H 1.09000 * 109.47437 * 34.32083 * 1 2 3 32 32 H 1.08996 * 109.47401 * 154.32832 * 1 2 3 33 33 H 1.09001 * 117.49204 * 145.04018 * 4 2 1 34 34 H 1.09000 * 117.51537 * 0.02562 * 4 2 1 35 35 H 1.08001 * 126.57716 * 359.97438 * 8 7 5 36 36 H 1.08002 * 126.57785 * 180.23303 * 9 8 7 37 37 H 1.08993 * 109.47295 * 329.70346 * 11 10 9 38 38 H 1.09005 * 109.46404 * 209.71215 * 11 10 9 39 39 H 1.09006 * 109.46969 * 299.99802 * 12 11 10 40 40 H 1.09003 * 109.47035 * 59.99084 * 12 11 10 41 41 H 1.09000 * 109.47370 * 89.99539 * 16 15 13 42 42 H 1.08997 * 109.47016 * 210.00128 * 16 15 13 43 43 H 1.09005 * 109.46729 * 329.99884 * 16 15 13 44 44 H 1.09006 * 109.47105 * 210.00219 * 17 15 13 45 45 H 1.08999 * 109.47221 * 329.99589 * 17 15 13 46 46 H 1.08999 * 109.46816 * 300.00317 * 18 17 15 47 47 H 1.08999 * 109.46710 * 59.99763 * 18 17 15 48 48 H 1.09001 * 109.46800 * 94.21743 * 20 19 18 49 49 H 1.09003 * 109.47399 * 214.21237 * 20 19 18 50 50 H 1.08993 * 109.47716 * 334.21714 * 20 19 18 51 51 H 0.97001 * 119.99646 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2375 -1.1215 -0.7648 5 6 2.2365 -1.1208 0.7652 6 1 3.1712 -0.8747 1.2690 7 6 1.3721 -2.1405 1.4609 8 6 1.3686 -2.3996 2.7808 9 6 0.4091 -3.4153 2.9964 10 6 -0.1105 -3.7220 1.7941 11 6 -1.1733 -4.7577 1.5316 12 6 -2.5549 -4.1087 1.6360 13 6 -3.6176 -5.1443 1.3729 14 8 -3.3011 -6.2890 1.1266 15 7 -4.9197 -4.7988 1.4123 16 6 -5.3020 -3.4163 1.7104 17 6 -5.9527 -5.8056 1.1571 18 6 -6.3534 -6.4709 2.4754 19 7 -7.3869 -7.4773 2.2201 20 6 -8.8021 -7.1012 2.2634 21 6 -7.0301 -8.7697 1.9414 22 1 -6.0646 -9.1420 2.2505 23 6 -7.9094 -9.6011 1.2613 24 7 -8.9829 -9.0975 0.6903 25 14 -7.5689 -11.4348 1.1567 26 1 -6.3071 -11.7458 1.8752 27 1 -8.6907 -12.1829 1.7791 28 1 -7.4380 -11.8335 -0.2678 29 8 0.4741 -2.9445 0.8683 30 1 -0.3633 0.0775 1.0248 31 1 -0.3634 0.8487 -0.5794 32 1 -0.3634 -0.9262 -0.4452 33 1 3.1728 -0.8754 -1.2676 34 1 1.6130 -1.8594 -1.2685 35 1 1.9789 -1.9209 3.5323 36 1 0.1456 -3.8612 3.9441 37 1 -1.0909 -5.5574 2.2676 38 1 -1.0399 -5.1696 0.5312 39 1 -2.6881 -3.6969 2.6365 40 1 -2.6371 -3.3089 0.9000 41 1 -5.3676 -2.8492 0.7818 42 1 -6.2701 -3.4069 2.2110 43 1 -4.5526 -2.9641 2.3601 44 1 -6.8249 -5.3266 0.7121 45 1 -5.5639 -6.5598 0.4730 46 1 -5.4812 -6.9498 2.9204 47 1 -6.7422 -5.7166 3.1595 48 1 -9.1435 -6.8552 1.2578 49 1 -9.3878 -7.9342 2.6522 50 1 -8.9281 -6.2344 2.9120 51 1 -9.5975 -9.6786 0.2154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699005308.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:19 Heat of formation + Delta-G solvation = 4.780790 kcal Electronic energy + Delta-G solvation = -28444.103105 eV Core-core repulsion = 24539.115687 eV Total energy + Delta-G solvation = -3904.987418 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.59593 -40.93800 -38.67120 -37.87563 -36.39879 -35.06904 -33.79927 -33.41372 -30.85906 -29.89647 -29.03396 -27.94085 -27.48553 -26.29785 -24.59807 -23.00885 -22.82768 -22.30268 -21.51475 -20.62866 -20.02316 -18.84281 -18.27255 -17.37632 -17.21826 -17.07816 -16.77246 -16.67990 -16.37781 -15.62937 -15.37352 -15.25573 -15.00518 -14.41186 -14.21680 -14.12890 -14.02977 -13.90872 -13.79559 -13.71394 -13.40837 -13.35850 -13.12874 -13.04288 -12.91668 -12.81650 -12.74535 -12.70674 -12.43443 -12.36286 -12.09191 -12.05370 -12.01218 -11.60177 -11.50646 -10.96775 -10.87380 -10.70869 -10.69747 -9.74929 -9.09789 -8.78538 -7.87465 -5.34853 0.69687 1.41616 1.43236 1.54195 1.63581 1.65761 1.85212 2.13531 2.49390 2.90272 3.26892 3.40632 3.59242 3.76306 3.77353 3.86483 3.93688 3.99992 4.06695 4.17950 4.23346 4.33735 4.38932 4.44419 4.46341 4.55331 4.62335 4.68259 4.76043 4.81323 4.84198 4.87209 4.88930 4.91605 4.94579 4.97429 4.99153 5.06953 5.15497 5.16355 5.17791 5.22783 5.33079 5.42034 5.54805 5.63135 5.64583 5.71910 6.26694 6.30091 6.48225 7.12825 7.22843 7.83366 8.23957 9.15887 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.020942 B = 0.002009 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.709136 B =13933.233486 C =14432.226179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.133 4.133 3 H 0.135 0.865 4 C -0.171 4.171 5 C -0.092 4.092 6 H 0.154 0.846 7 C 0.013 3.987 8 C -0.214 4.214 9 C -0.207 4.207 10 C -0.022 4.022 11 C -0.020 4.020 12 C -0.116 4.116 13 C 0.500 3.500 14 O -0.590 6.590 15 N -0.613 5.613 16 C 0.071 3.929 17 C 0.111 3.889 18 C 0.149 3.851 19 N -0.617 5.617 20 C 0.178 3.822 21 C -0.261 4.261 22 H 0.058 0.942 23 C -0.051 4.051 24 N -0.935 5.935 25 Si 0.966 3.034 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.291 1.291 29 O -0.186 6.186 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.166 0.834 36 H 0.161 0.839 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.124 0.876 40 H 0.112 0.888 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.027 0.973 47 H 0.067 0.933 48 H 0.007 0.993 49 H 0.018 0.982 50 H 0.036 0.964 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.955 25.014 2.803 32.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 H 0.153 0.847 4 C -0.208 4.208 5 C -0.109 4.109 6 H 0.172 0.828 7 C -0.037 4.037 8 C -0.232 4.232 9 C -0.226 4.226 10 C -0.071 4.071 11 C -0.058 4.058 12 C -0.156 4.156 13 C 0.290 3.710 14 O -0.470 6.470 15 N -0.345 5.345 16 C -0.071 4.071 17 C -0.015 4.015 18 C 0.022 3.978 19 N -0.341 5.341 20 C 0.033 3.967 21 C -0.391 4.391 22 H 0.076 0.924 23 C -0.246 4.246 24 N -0.582 5.582 25 Si 0.794 3.206 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.218 1.218 29 O -0.084 6.084 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.139 0.861 34 H 0.101 0.899 35 H 0.183 0.817 36 H 0.179 0.821 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.142 0.858 40 H 0.130 0.870 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.117 0.883 44 H 0.091 0.909 45 H 0.055 0.945 46 H 0.045 0.955 47 H 0.086 0.914 48 H 0.025 0.975 49 H 0.037 0.963 50 H 0.055 0.945 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 20.883 24.351 2.308 32.162 hybrid contribution -0.231 -1.580 -0.265 1.619 sum 20.651 22.771 2.043 30.809 Atomic orbital electron populations 1.21382 0.93124 1.01977 1.01859 1.22633 0.95539 0.94870 1.02021 0.84712 1.23247 1.03727 1.01466 0.92350 1.20850 0.99330 0.96319 0.94443 0.82830 1.21787 0.94140 0.95674 0.92101 1.21754 1.03701 1.02026 0.95761 1.21841 1.00631 1.01542 0.98584 1.22338 0.99978 0.97323 0.87497 1.19728 0.88588 0.93249 1.04190 1.21630 0.90558 0.97090 1.06303 1.21337 0.84096 0.89465 0.76150 1.90732 1.82315 1.23401 1.50580 1.48103 1.05356 1.11627 1.69453 1.22119 1.03142 0.79573 1.02250 1.21983 0.89590 0.90366 0.99548 1.21140 0.91059 0.90839 0.94783 1.44181 1.01981 1.05738 1.82206 1.20599 0.83306 0.95790 0.97010 1.19448 1.01750 0.88211 1.29687 0.92429 1.25743 0.98279 1.02646 0.97969 1.70209 1.14955 1.34575 1.38453 0.85217 0.77586 0.80673 0.77087 1.19815 1.20967 1.21776 1.83930 1.44321 1.41828 1.38314 0.92574 0.90683 0.93797 0.86090 0.89916 0.81656 0.82131 0.88553 0.91159 0.85767 0.86984 0.91208 0.90106 0.88284 0.90891 0.94473 0.95481 0.91436 0.97510 0.96272 0.94535 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.15 71.98 0.66 -0.97 16 2 C -0.13 -1.42 6.41 -10.77 -0.07 -1.49 16 3 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.17 -2.06 9.82 30.62 0.30 -1.76 16 5 C -0.09 -1.15 6.23 -11.54 -0.07 -1.22 16 6 H 0.15 1.21 8.14 -2.39 -0.02 1.19 16 7 C 0.01 0.23 5.90 24.83 0.15 0.38 16 8 C -0.21 -3.72 10.81 22.19 0.24 -3.48 16 9 C -0.21 -3.95 10.81 22.19 0.24 -3.71 16 10 C -0.02 -0.47 6.58 24.83 0.16 -0.31 16 11 C -0.02 -0.45 5.04 29.85 0.15 -0.30 16 12 C -0.12 -2.36 4.23 29.84 0.13 -2.24 16 13 C 0.50 15.62 7.67 87.65 0.67 16.29 16 14 O -0.59 -25.06 15.56 -3.06 -0.05 -25.11 16 15 N -0.61 -18.09 2.87 -846.75 -2.43 -20.52 16 16 C 0.07 1.24 10.24 127.77 1.31 2.55 16 17 C 0.11 4.38 5.73 86.38 0.49 4.87 16 18 C 0.15 6.37 6.03 86.38 0.52 6.89 16 19 N -0.62 -32.36 2.93 -726.94 -2.13 -34.49 16 20 C 0.18 8.81 9.01 127.77 1.15 9.96 16 21 C -0.26 -15.32 9.67 84.03 0.81 -14.50 16 22 H 0.06 3.46 7.85 -2.91 -0.02 3.43 16 23 C -0.05 -3.02 5.13 84.86 0.44 -2.58 16 24 N -0.94 -56.62 10.59 21.65 0.23 -56.39 16 25 Si 0.97 47.68 29.57 68.60 2.03 49.71 16 26 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 27 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 28 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 29 O -0.19 -4.18 9.63 -2.51 -0.02 -4.20 16 30 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.04 0.72 7.27 -2.39 -0.02 0.70 16 33 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 1.32 7.88 -2.39 -0.02 1.31 16 35 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.10 2.31 8.10 -2.39 -0.02 2.29 16 38 H 0.07 1.84 8.10 -2.38 -0.02 1.82 16 39 H 0.12 1.85 7.40 -2.38 -0.02 1.83 16 40 H 0.11 1.88 8.11 -2.39 -0.02 1.86 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.35 8.07 -2.39 -0.02 1.33 16 43 H 0.10 1.14 6.44 -2.38 -0.02 1.13 16 44 H 0.07 2.77 8.07 -2.38 -0.02 2.75 16 45 H 0.04 1.82 7.42 -2.39 -0.02 1.80 16 46 H 0.03 1.25 8.03 -2.39 -0.02 1.23 16 47 H 0.07 2.43 7.86 -2.39 -0.02 2.41 16 48 H 0.01 0.35 7.42 -2.39 -0.02 0.34 16 49 H 0.02 1.02 7.19 -2.39 -0.02 1.00 16 50 H 0.04 1.48 7.84 -2.39 -0.02 1.46 16 51 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -76.85 417.25 5.80 -71.05 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.89 Total: 11.56 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 7.28 Total: 8.39 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -4.33 Total: -111.40 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.07 Total: -29.31 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -76.85 5.80 -71.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699005308.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.835 kcal (2) G-P(sol) polarization free energy of solvation -76.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds