Wall clock time and date at job start Tue Mar 31 2020 17:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 115.56458 * 2 1 4 4 C 1.53005 * 117.49556 * 145.69299 * 2 1 3 5 5 C 1.53004 * 60.00021 * 107.48607 * 4 2 1 6 6 H 1.08999 * 117.49590 * 252.48485 * 5 4 2 7 7 C 1.50697 * 117.49939 * 107.48976 * 5 4 2 8 8 C 1.34513 * 125.79065 * 171.38787 * 7 5 4 9 9 C 1.41379 * 106.84038 * 180.02562 * 8 7 5 10 10 C 1.34514 * 106.84315 * 0.02562 * 9 8 7 11 11 C 1.50696 * 125.79137 * 180.02562 * 10 9 8 12 12 C 1.52994 * 109.47729 * 89.99323 * 11 10 9 13 13 C 1.50703 * 109.47202 * 180.02562 * 12 11 10 14 14 O 1.21273 * 120.00061 * 359.97438 * 13 12 11 15 15 N 1.34784 * 119.99484 * 180.02562 * 13 12 11 16 16 C 1.46494 * 120.00498 * 359.97438 * 15 13 12 17 17 C 1.46504 * 119.99441 * 180.02562 * 15 13 12 18 18 C 1.52994 * 109.47293 * 89.99514 * 17 15 13 19 19 N 1.46497 * 109.47019 * 179.97438 * 18 17 15 20 20 C 1.46506 * 119.99824 * 90.00389 * 19 18 17 21 21 C 1.36938 * 120.00728 * 270.00104 * 19 18 17 22 22 H 1.08004 * 119.99430 * 23.04685 * 21 19 18 23 23 C 1.38811 * 120.00284 * 203.04751 * 21 19 18 24 24 N 1.31624 * 120.00037 * 12.93591 * 23 21 19 25 25 Si 1.86801 * 119.99698 * 192.93692 * 23 21 19 26 26 H 1.48493 * 109.47382 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46878 * 119.99998 * 25 23 21 28 28 H 1.48497 * 109.47120 * 239.99679 * 25 23 21 29 29 O 1.34302 * 108.41948 * 0.25721 * 10 9 8 30 30 H 1.09000 * 109.47687 * 205.69061 * 1 2 3 31 31 H 1.09008 * 109.47001 * 325.69211 * 1 2 3 32 32 H 1.09004 * 109.47223 * 85.68139 * 1 2 3 33 33 H 1.09004 * 117.49702 * 359.97438 * 4 2 1 34 34 H 1.08993 * 117.49614 * 214.97603 * 4 2 1 35 35 H 1.07999 * 126.57804 * 0.06255 * 8 7 5 36 36 H 1.08004 * 126.57679 * 179.97438 * 9 8 7 37 37 H 1.09003 * 109.47064 * 329.98901 * 11 10 9 38 38 H 1.09006 * 109.47353 * 209.99581 * 11 10 9 39 39 H 1.08995 * 109.47470 * 59.99709 * 12 11 10 40 40 H 1.09001 * 109.46913 * 299.99776 * 12 11 10 41 41 H 1.09003 * 109.47099 * 270.00340 * 16 15 13 42 42 H 1.09005 * 109.46857 * 30.00174 * 16 15 13 43 43 H 1.08996 * 109.47391 * 149.99895 * 16 15 13 44 44 H 1.09003 * 109.46885 * 329.99613 * 17 15 13 45 45 H 1.08997 * 109.46723 * 209.99768 * 17 15 13 46 46 H 1.08997 * 109.47443 * 299.99813 * 18 17 15 47 47 H 1.09003 * 109.47074 * 60.00215 * 18 17 15 48 48 H 1.09003 * 109.47299 * 95.11870 * 20 19 18 49 49 H 1.08998 * 109.47428 * 215.12118 * 20 19 18 50 50 H 1.08998 * 109.47179 * 335.12223 * 20 19 18 51 51 H 0.96998 * 119.99790 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1211 0.7650 5 6 2.2363 -1.1211 -0.7651 6 1 1.6114 -1.8588 -1.2683 7 6 3.5291 -0.7813 -1.4609 8 6 3.7638 -0.8885 -2.7811 9 6 5.0963 -0.4678 -2.9957 10 6 5.5966 -0.1292 -1.7939 11 6 6.9903 0.3801 -1.5311 12 6 7.0033 1.9066 -1.6328 13 6 8.3973 2.4157 -1.3706 14 8 9.2921 1.6345 -1.1259 15 7 8.6492 3.7392 -1.4070 16 6 7.5682 4.6829 -1.7020 17 6 10.0045 4.2341 -1.1526 18 6 10.7755 4.3106 -2.4719 19 7 12.1305 4.8061 -2.2176 20 6 13.2121 3.8627 -1.9234 21 6 12.3862 6.1508 -2.2548 22 1 11.5845 6.8574 -2.0982 23 6 13.6756 6.6058 -2.4939 24 7 14.5961 5.7740 -2.9335 25 14 14.1045 8.3986 -2.1915 26 1 12.9022 9.1194 -1.7016 27 1 15.1818 8.4849 -1.1732 28 1 14.5706 9.0166 -3.4588 29 8 4.6448 -0.3268 -0.8671 30 1 -0.3634 -0.9260 0.4455 31 1 -0.3633 0.8489 0.5793 32 1 -0.3634 0.0774 -1.0248 33 1 1.6110 -1.8584 1.2685 34 1 3.1714 -0.8753 1.2682 35 1 3.0675 -1.2298 -3.5328 36 1 5.6137 -0.4270 -3.9429 37 1 7.6753 -0.0391 -2.2682 38 1 7.3044 0.0799 -0.5313 39 1 6.3184 2.3257 -0.8958 40 1 6.6894 2.2067 -2.6325 41 1 7.5140 4.8486 -2.7780 42 1 6.6217 4.2729 -1.3494 43 1 7.7643 5.6292 -1.1980 44 1 10.5171 3.5553 -0.4710 45 1 9.9508 5.2265 -0.7050 46 1 10.8292 3.3183 -2.9195 47 1 10.2628 4.9894 -3.1535 48 1 13.7516 3.6306 -2.8417 49 1 13.8971 4.3087 -1.2024 50 1 12.7923 2.9469 -1.5073 51 1 15.4972 6.0919 -3.1002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699005310.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:29 Heat of formation + Delta-G solvation = 20.441956 kcal Electronic energy + Delta-G solvation = -27958.001792 eV Core-core repulsion = 24053.693493 eV Total energy + Delta-G solvation = -3904.308299 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.84625 -39.74046 -38.16981 -36.15776 -34.86827 -34.16826 -33.03474 -31.49827 -30.07801 -28.87889 -27.95621 -26.48910 -25.79016 -25.08402 -23.20902 -22.22985 -21.93405 -21.14068 -20.50278 -20.08689 -18.87131 -17.48893 -16.82291 -16.54801 -16.30761 -15.97978 -15.63697 -15.21160 -14.79214 -14.72107 -14.11708 -13.93869 -13.59668 -13.57980 -13.50570 -13.02993 -12.95901 -12.85096 -12.68171 -12.53575 -12.46476 -12.34429 -12.28809 -12.05723 -11.95368 -11.88038 -11.32825 -11.18667 -10.99691 -10.84677 -10.82065 -10.53359 -10.48523 -10.15541 -10.02569 -9.89515 -9.77391 -9.60247 -8.68130 -8.38342 -8.36510 -6.69181 -5.69169 -3.17209 1.41628 2.35147 2.57731 2.79748 3.24256 3.38321 3.39593 3.45064 3.47075 4.01221 4.29966 4.37615 4.43565 4.52600 4.72531 4.78291 4.82131 4.86737 4.88045 5.04642 5.12553 5.17224 5.28073 5.31694 5.36042 5.43439 5.46615 5.51540 5.55549 5.57051 5.66662 5.68452 5.74022 5.78295 5.80189 5.80775 5.87097 5.97753 6.18380 6.32424 6.33296 6.56901 6.70062 6.91227 6.98810 6.99475 7.44574 7.61095 7.78269 7.83919 8.35608 8.43560 9.26266 9.89903 10.40027 11.35182 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.026770 B = 0.001756 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.701577 B =15937.775350 C =16436.064780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.140 4.140 3 H 0.107 0.893 4 C -0.166 4.166 5 C -0.080 4.080 6 H 0.133 0.867 7 C 0.012 3.988 8 C -0.202 4.202 9 C -0.207 4.207 10 C -0.005 4.005 11 C -0.024 4.024 12 C -0.135 4.135 13 C 0.509 3.491 14 O -0.539 6.539 15 N -0.611 5.611 16 C 0.078 3.922 17 C 0.092 3.908 18 C 0.144 3.856 19 N -0.600 5.600 20 C 0.162 3.838 21 C -0.257 4.257 22 H 0.068 0.932 23 C 0.001 3.999 24 N -0.906 5.906 25 Si 0.904 3.096 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.290 1.290 29 O -0.172 6.172 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.038 0.962 47 H 0.044 0.956 48 H 0.031 0.969 49 H 0.040 0.960 50 H 0.001 0.999 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.977 -12.435 3.888 31.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 H 0.125 0.875 4 C -0.203 4.203 5 C -0.098 4.098 6 H 0.150 0.850 7 C -0.038 4.038 8 C -0.221 4.221 9 C -0.226 4.226 10 C -0.055 4.055 11 C -0.062 4.062 12 C -0.175 4.175 13 C 0.296 3.704 14 O -0.416 6.416 15 N -0.345 5.345 16 C -0.066 4.066 17 C -0.032 4.032 18 C 0.015 3.985 19 N -0.323 5.323 20 C 0.017 3.983 21 C -0.386 4.386 22 H 0.085 0.915 23 C -0.197 4.197 24 N -0.551 5.551 25 Si 0.735 3.265 26 H -0.204 1.204 27 H -0.216 1.216 28 H -0.218 1.218 29 O -0.069 6.069 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.164 0.836 36 H 0.167 0.833 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.049 0.951 49 H 0.058 0.942 50 H 0.020 0.980 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -28.253 -12.745 4.287 31.290 hybrid contribution 0.294 1.077 -0.212 1.136 sum -27.960 -11.668 4.075 30.570 Atomic orbital electron populations 1.21391 0.92097 1.02329 1.02223 1.22519 0.95514 0.94801 1.03020 0.87460 1.23198 1.03182 1.01374 0.92557 1.20569 0.91967 1.03053 0.94168 0.84962 1.21304 0.87139 1.03671 0.91636 1.21461 0.97474 1.07832 0.95311 1.21603 0.95634 1.06862 0.98494 1.22458 0.91566 1.04398 0.87062 1.19877 0.87072 0.93793 1.05457 1.21688 0.95549 0.95850 1.04410 1.20458 0.90328 0.82278 0.77290 1.90718 1.47219 1.55095 1.48590 1.47989 1.10851 1.05821 1.69799 1.21805 0.89707 0.93784 1.01271 1.22555 0.79951 0.99187 1.01535 1.20967 0.86794 0.97462 0.93270 1.43856 1.03073 1.03720 1.81678 1.20804 0.89616 0.88991 0.98853 1.19214 0.94247 0.82302 1.42850 0.91451 1.25045 0.97327 0.97638 0.99687 1.70097 1.03086 1.33757 1.48120 0.86190 0.78107 0.84798 0.77454 1.20358 1.21620 1.21752 1.83922 1.19671 1.65676 1.37675 0.92274 0.91699 0.91884 0.87921 0.88071 0.83616 0.83311 0.87793 0.89280 0.88875 0.88532 0.92444 0.91554 0.90830 0.90570 0.90843 0.94386 0.93722 0.95115 0.94150 0.97995 0.93798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.19 37.16 0.38 -0.18 16 2 C -0.14 -0.89 6.11 -90.62 -0.55 -1.45 16 3 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 4 C -0.17 -1.09 9.81 -26.73 -0.26 -1.35 16 5 C -0.08 -0.57 5.96 -91.77 -0.55 -1.12 16 6 H 0.13 0.72 8.14 -51.93 -0.42 0.29 16 7 C 0.01 0.12 6.80 -35.63 -0.24 -0.12 16 8 C -0.20 -1.93 10.81 -39.70 -0.43 -2.36 16 9 C -0.21 -2.10 10.81 -39.70 -0.43 -2.53 16 10 C 0.00 -0.05 6.58 -35.63 -0.23 -0.29 16 11 C -0.02 -0.27 5.04 -27.89 -0.14 -0.41 16 12 C -0.13 -1.41 4.23 -27.88 -0.12 -1.53 16 13 C 0.51 7.57 7.67 -10.98 -0.08 7.48 16 14 O -0.54 -10.19 15.56 5.56 0.09 -10.10 16 15 N -0.61 -8.99 2.87 -181.57 -0.52 -9.51 16 16 C 0.08 0.81 10.29 59.84 0.62 1.43 16 17 C 0.09 1.70 5.77 -4.04 -0.02 1.68 16 18 C 0.14 3.11 5.97 -4.05 -0.02 3.08 16 19 N -0.60 -15.65 2.92 -181.12 -0.53 -16.18 16 20 C 0.16 4.24 8.98 59.85 0.54 4.77 16 21 C -0.26 -7.11 9.65 -15.06 -0.15 -7.26 16 22 H 0.07 1.80 7.86 -52.48 -0.41 1.38 16 23 C 0.00 0.04 5.10 -17.43 -0.09 -0.05 16 24 N -0.91 -27.01 10.71 55.49 0.59 -26.41 16 25 Si 0.90 21.94 29.57 -169.99 -5.03 16.91 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 O -0.17 -1.96 10.36 5.70 0.06 -1.91 16 30 H 0.06 0.22 7.90 -51.93 -0.41 -0.19 16 31 H 0.06 0.27 8.14 -51.92 -0.42 -0.16 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.10 0.50 8.05 -51.93 -0.42 0.09 16 34 H 0.10 0.77 7.96 -51.93 -0.41 0.36 16 35 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.10 1.15 8.10 -51.93 -0.42 0.72 16 38 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 39 H 0.09 0.85 7.40 -51.93 -0.38 0.46 16 40 H 0.10 0.87 8.11 -51.93 -0.42 0.45 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.52 6.44 -51.93 -0.33 0.19 16 43 H 0.07 0.74 7.89 -51.93 -0.41 0.33 16 44 H 0.08 1.56 7.42 -51.93 -0.39 1.18 16 45 H 0.07 1.34 7.89 -51.93 -0.41 0.93 16 46 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 47 H 0.04 0.94 8.04 -51.93 -0.42 0.53 16 48 H 0.03 0.86 7.34 -51.93 -0.38 0.48 16 49 H 0.04 1.11 7.34 -51.93 -0.38 0.73 16 50 H 0.00 0.04 8.03 -51.93 -0.42 -0.38 16 51 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 420.17 15.07 6.33 6.33 Total: -1.00 -33.61 420.17 -9.75 -43.36 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -8.95 Total: -2.30 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.79 Total: -0.19 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.46 Total: -52.11 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.15 Total: -12.01 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.61 -9.75 -43.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699005310.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.797 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds