Wall clock time and date at job start Tue Mar 31 2020 18:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47189 * 312.09870 * 3 2 1 5 5 C 1.34780 * 119.99890 * 275.16165 * 4 3 2 6 6 O 1.21283 * 120.00312 * 4.79554 * 5 4 3 7 7 C 1.50704 * 119.99916 * 184.79413 * 5 4 3 8 8 H 1.09001 * 109.54145 * 311.64921 * 7 5 4 9 9 C 1.53173 * 109.54421 * 71.82670 * 7 5 4 10 10 C 1.53083 * 109.16541 * 62.88525 * 9 7 5 11 11 O 1.42905 * 109.41770 * 57.60735 * 10 9 7 12 12 C 1.42899 * 114.09817 * 298.84799 * 11 10 9 13 13 H 1.09006 * 109.48275 * 301.16954 * 12 11 10 14 14 C 1.52999 * 109.48542 * 181.13601 * 12 11 10 15 15 C 1.53172 * 109.54290 * 191.47223 * 7 5 4 16 16 C 1.46492 * 120.00020 * 95.15995 * 4 3 2 17 17 C 1.53040 * 109.45977 * 55.73747 * 16 4 3 18 18 C 1.53196 * 109.31347 * 178.61373 * 17 16 4 19 19 N 1.46930 * 108.77133 * 54.63436 * 18 17 16 20 20 C 1.36936 * 120.62761 * 126.41584 * 19 18 17 21 21 H 1.08000 * 120.00288 * 328.69313 * 20 19 18 22 22 C 1.38818 * 120.00021 * 148.69475 * 20 19 18 23 23 N 1.31621 * 119.99814 * 348.20448 * 22 20 19 24 24 Si 1.86794 * 120.00108 * 168.20575 * 22 20 19 25 25 H 1.48508 * 109.47181 * 60.00066 * 24 22 20 26 26 H 1.48500 * 109.47159 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47171 * 299.99928 * 24 22 20 28 28 C 1.46916 * 118.74092 * 306.38697 * 19 18 17 29 29 C 1.53041 * 109.46344 * 295.66798 * 16 4 3 30 30 H 4.40644 * 5.51372 * 180.02562 * 4 1 2 31 31 H 1.08999 * 109.47469 * 72.10002 * 3 2 1 32 32 H 1.09007 * 109.47101 * 192.10559 * 3 2 1 33 33 H 1.09000 * 109.52104 * 182.79405 * 9 7 5 34 34 H 1.09009 * 109.52084 * 302.91948 * 9 7 5 35 35 H 1.08998 * 109.48407 * 177.59153 * 10 9 7 36 36 H 1.09005 * 109.48288 * 297.62729 * 10 9 7 37 37 H 1.09002 * 109.46605 * 59.99272 * 14 12 11 38 38 H 1.08994 * 109.47884 * 179.97438 * 14 12 11 39 39 H 1.09004 * 109.46672 * 300.00174 * 14 12 11 40 40 H 1.09003 * 109.52811 * 57.01797 * 15 7 5 41 41 H 1.09002 * 109.52550 * 177.20556 * 15 7 5 42 42 H 1.09003 * 109.46239 * 175.69585 * 16 4 3 43 43 H 1.09003 * 109.49553 * 298.56568 * 17 16 4 44 44 H 1.08992 * 109.49963 * 58.66180 * 17 16 4 45 45 H 1.09000 * 109.58403 * 294.85024 * 18 17 16 46 46 H 1.09000 * 109.70286 * 174.49020 * 18 17 16 47 47 H 0.96998 * 120.00155 * 180.02562 * 23 22 20 48 48 H 1.08999 * 109.58869 * 293.82597 * 28 19 18 49 49 H 1.09000 * 109.70944 * 173.47001 * 28 19 18 50 50 H 1.08999 * 109.49519 * 301.33584 * 29 16 4 51 51 H 1.09004 * 109.49445 * 61.42900 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.9251 1.0249 5 6 3.2602 -0.5119 2.3016 6 8 2.8872 0.5976 2.6194 7 6 3.8639 -1.4285 3.3344 8 1 3.3976 -2.4114 3.2667 9 6 5.3700 -1.5577 3.0871 10 6 6.0271 -0.1858 3.2595 11 8 5.7500 0.3123 4.5700 12 6 4.3594 0.4984 4.8415 13 1 3.9383 1.1976 4.1190 14 6 4.1858 1.0583 6.2547 15 6 3.6333 -0.8472 4.7327 16 6 3.4871 -2.2999 0.6620 17 6 4.5292 -2.2803 -0.4586 18 6 4.9208 -3.7187 -0.8116 19 7 3.7028 -4.4749 -1.1333 20 6 3.5976 -5.1579 -2.3155 21 1 4.1003 -4.7907 -3.1980 22 6 2.8447 -6.3224 -2.3797 23 7 2.4261 -6.8973 -1.2721 24 14 2.4258 -7.0736 -4.0378 25 1 3.6792 -7.4167 -4.7568 26 1 1.6198 -8.3041 -3.8344 27 1 1.6460 -6.0976 -4.8406 28 6 2.6003 -4.4848 -0.1624 29 6 2.2347 -3.0379 0.1833 30 1 -1.0499 -0.0003 0.0000 31 1 3.0095 -0.3150 -0.9779 32 1 3.0089 1.0057 0.2155 33 1 5.7978 -2.2592 3.8033 34 1 5.5429 -1.9206 2.0739 35 1 7.1049 -0.2797 3.1267 36 1 5.6279 0.5045 2.5164 37 1 4.7024 2.0150 6.3323 38 1 3.1252 1.2006 6.4615 39 1 4.6066 0.3586 6.9769 40 1 2.5654 -0.7014 4.8951 41 1 4.0262 -1.5343 5.4821 42 1 3.8994 -2.8109 1.5321 43 1 4.1091 -1.7915 -1.3376 44 1 5.4117 -1.7345 -0.1252 45 1 5.4232 -4.1798 0.0388 46 1 5.5882 -3.7169 -1.6734 47 1 1.9003 -7.7112 -1.3169 48 1 2.9135 -5.0084 0.7409 49 1 1.7347 -4.9872 -0.5942 50 1 1.4842 -3.0312 0.9737 51 1 1.8362 -2.5419 -0.7017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699785487.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:23 Heat of formation + Delta-G solvation = -5.674928 kcal Electronic energy + Delta-G solvation = -31110.646381 eV Core-core repulsion = 27205.205569 eV Total energy + Delta-G solvation = -3905.440812 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.00447 -38.80514 -37.54291 -35.40642 -34.06648 -32.98410 -32.75166 -31.99192 -30.27973 -29.57874 -28.11147 -27.48028 -25.22383 -24.35360 -22.80817 -22.33846 -22.09549 -21.22225 -19.38832 -19.05271 -17.86046 -17.03086 -16.77773 -16.30437 -16.15882 -15.80884 -15.33467 -14.92530 -14.57372 -14.34940 -14.06412 -13.93973 -13.70083 -13.53478 -13.21463 -12.90072 -12.83217 -12.74462 -12.50551 -12.45674 -12.35142 -12.05506 -11.93370 -11.57134 -11.18153 -11.14448 -10.96085 -10.81731 -10.79308 -10.66680 -10.58079 -10.44763 -10.25819 -10.16071 -9.95173 -9.86695 -9.81861 -9.62413 -9.08633 -8.67660 -8.48158 -6.73251 -5.86956 -3.34755 2.49788 2.64930 3.00142 3.33022 3.39064 3.39668 3.48580 3.76748 4.39845 4.41939 4.50210 4.57728 4.68726 4.84807 4.90226 5.03467 5.18749 5.29716 5.33259 5.33572 5.40371 5.42991 5.44828 5.51956 5.53774 5.55343 5.62671 5.64397 5.71671 5.83943 5.87972 5.91602 5.92531 6.04024 6.08868 6.11420 6.19687 6.26322 6.31583 6.45914 6.52764 6.63719 6.66104 6.82005 7.25482 7.25675 7.44994 7.57848 7.71582 7.75140 8.19356 8.38860 9.13320 9.74551 10.31687 11.21505 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017138 B = 0.003363 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.376976 B = 8323.913537 C = 9064.043423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.191 4.191 3 C 0.223 3.777 4 N -0.599 5.599 5 C 0.522 3.478 6 O -0.541 6.541 7 C -0.113 4.113 8 H 0.101 0.899 9 C -0.150 4.150 10 C 0.064 3.936 11 O -0.383 6.383 12 C 0.069 3.931 13 H 0.094 0.906 14 C -0.142 4.142 15 C -0.126 4.126 16 C 0.137 3.863 17 C -0.143 4.143 18 C 0.148 3.852 19 N -0.591 5.591 20 C -0.257 4.257 21 H 0.064 0.936 22 C 0.007 3.993 23 N -0.904 5.904 24 Si 0.904 3.096 25 H -0.282 1.282 26 H -0.290 1.290 27 H -0.283 1.283 28 C 0.175 3.825 29 C -0.147 4.147 30 H 0.214 0.786 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.020 0.980 46 H 0.059 0.941 47 H 0.255 0.745 48 H 0.019 0.981 49 H 0.090 0.910 50 H 0.049 0.951 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.982 12.980 9.408 16.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.192 4.192 3 C 0.101 3.899 4 N -0.330 5.330 5 C 0.310 3.690 6 O -0.419 6.419 7 C -0.134 4.134 8 H 0.119 0.881 9 C -0.188 4.188 10 C -0.013 4.013 11 O -0.303 6.303 12 C 0.012 3.988 13 H 0.112 0.888 14 C -0.199 4.199 15 C -0.164 4.164 16 C 0.035 3.965 17 C -0.184 4.184 18 C 0.021 3.979 19 N -0.313 5.313 20 C -0.386 4.386 21 H 0.082 0.918 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.734 3.266 25 H -0.208 1.208 26 H -0.216 1.216 27 H -0.210 1.210 28 C 0.049 3.951 29 C -0.187 4.187 30 H 0.231 0.769 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.038 0.962 46 H 0.077 0.923 47 H 0.065 0.935 48 H 0.037 0.963 49 H 0.108 0.892 50 H 0.068 0.932 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.863 13.424 9.721 16.819 hybrid contribution -0.855 -0.778 -1.139 1.623 sum 2.008 12.646 8.582 15.414 Atomic orbital electron populations 1.24829 0.95866 1.00627 1.00222 1.23459 0.94861 1.00335 1.00578 1.18238 0.83886 0.94774 0.92971 1.48341 1.63969 1.13228 1.07460 1.20670 0.77790 0.87657 0.82855 1.90577 1.49909 1.21913 1.79518 1.21415 0.97321 1.00072 0.94564 0.88075 1.22281 0.93121 0.99349 1.04049 1.22498 1.00419 0.93321 0.85090 1.87865 1.24743 1.85602 1.32075 1.22560 0.81454 0.96410 0.98345 0.88802 1.21738 1.01773 1.01213 0.95157 1.22045 1.01759 0.97963 0.94669 1.21490 0.96737 0.79596 0.98682 1.22468 0.97310 1.00693 0.97880 1.20870 0.90072 0.88744 0.98227 1.44018 1.11014 1.57166 1.19144 1.19109 1.30227 1.02313 0.86969 0.91813 1.25151 1.01432 0.95830 0.96817 1.69956 1.39623 1.19662 1.25509 0.86351 0.78229 0.78421 0.83602 1.20804 1.21583 1.20965 1.20756 0.93145 0.89194 0.92022 1.22613 0.95448 1.00444 1.00230 0.76912 0.87715 0.88520 0.89704 0.89525 0.88736 0.93405 0.92162 0.91299 0.92330 0.90591 0.90623 0.89024 0.91672 0.92510 0.96228 0.92275 0.93463 0.96263 0.89153 0.93222 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.75 19.25 29.55 0.57 -2.18 16 2 C -0.19 -2.87 12.53 -37.12 -0.47 -3.34 16 3 C 0.22 3.05 5.22 -6.83 -0.04 3.02 16 4 N -0.60 -8.40 2.36 -169.37 -0.40 -8.80 16 5 C 0.52 7.45 5.65 -10.98 -0.06 7.39 16 6 O -0.54 -8.88 13.25 5.55 0.07 -8.80 16 7 C -0.11 -1.38 2.16 -91.59 -0.20 -1.58 16 8 H 0.10 1.22 6.99 -51.93 -0.36 0.86 16 9 C -0.15 -1.65 5.26 -26.60 -0.14 -1.79 16 10 C 0.06 0.73 6.62 37.20 0.25 0.97 16 11 O -0.38 -5.01 10.41 -35.23 -0.37 -5.38 16 12 C 0.07 0.86 2.98 -26.58 -0.08 0.78 16 13 H 0.09 1.37 5.42 -51.93 -0.28 1.08 16 14 C -0.14 -1.45 9.56 37.16 0.36 -1.09 16 15 C -0.13 -1.48 4.63 -26.50 -0.12 -1.60 16 16 C 0.14 2.04 1.58 -67.89 -0.11 1.93 16 17 C -0.14 -2.13 5.03 -26.61 -0.13 -2.27 16 18 C 0.15 2.75 6.52 -3.71 -0.02 2.72 16 19 N -0.59 -13.65 2.98 -172.32 -0.51 -14.16 16 20 C -0.26 -6.66 9.58 -15.06 -0.14 -6.80 16 21 H 0.06 1.63 7.86 -52.49 -0.41 1.21 16 22 C 0.01 0.18 5.02 -17.43 -0.09 0.09 16 23 N -0.90 -25.12 11.11 55.49 0.62 -24.50 16 24 Si 0.90 20.98 29.57 -169.99 -5.03 15.95 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C 0.18 3.88 5.25 -3.72 -0.02 3.86 16 29 C -0.15 -2.63 4.99 -26.61 -0.13 -2.76 16 30 H 0.21 2.23 7.80 -54.10 -0.42 1.81 16 31 H 0.11 1.33 6.24 -51.93 -0.32 1.01 16 32 H 0.10 1.26 7.66 -51.92 -0.40 0.86 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.94 5.64 -51.92 -0.29 0.65 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.59 7.38 -51.93 -0.38 0.21 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 1.32 4.65 -51.93 -0.24 1.08 16 43 H 0.06 1.00 6.58 -51.93 -0.34 0.66 16 44 H 0.06 0.71 7.56 -51.93 -0.39 0.32 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 1.09 7.93 -51.93 -0.41 0.67 16 47 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.09 2.30 6.14 -51.93 -0.32 1.98 16 50 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 51 H 0.06 1.17 7.30 -51.93 -0.38 0.79 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -29.93 387.71 -8.68 -38.61 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -8.32 Total: 3.89 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -0.58 Total: -2.65 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.30 Total: -47.46 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.29 Total: -14.18 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.93 -8.68 -38.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699785487.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.932 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds